mRNA_M-pyrifera_M_contig114516.3029.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114516.3029.1
Unique NamemRNA_M-pyrifera_M_contig114516.3029.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114516.3029.1 vs. uniprot
Match: A0A5A8ENQ4_CAFRO (UBA_e1_C domain-containing protein n=5 Tax=Sar TaxID=2698737 RepID=A0A5A8ENQ4_CAFRO)

HSP 1 Score: 216 bits (550), Expect = 9.720e-62
Identity = 117/192 (60.94%), Postives = 140/192 (72.92%), Query Frame = 1
Query:    1 QWLYLDAFDALPPVDGDDAPSADSR--APKGDRYDHLRAMLGQDLVSKLQSRRVFLVGSGALGCEFLKSFCMLGVGCGGARGEXXXXXXXXXXVTVTDMDQIEVSNLNRQFLFRQKDVGQPKSSTAAAAARAMNPDLRVEAITTPVGTDTESTFNDRFWEGIDVVVNALDNVKARLYVDSQCVWYRRPLLES 570
            Q+ YLDAF+ +   +G +  + D    A  G RYDH+  + G      LQSR+VFLVGSGALGCEFLK+F M+G+GCG A G           VTVTDMD IEVSNLNRQFLFR +DVG+ KS  AAAAA+AMNPDL+VEA+  PVG DTESTF+D FW G+D+V NALDNVKARLYVD  CV+YR+PL+ES
Sbjct:  420 QFFYLDAFETIA-EEGHELAAKDVSEFAVTGTRYDHVVGLFGSRYAEHLQSRKVFLVGSGALGCEFLKNFAMMGLGCG-ADGR----------VTVTDMDNIEVSNLNRQFLFRPEDVGKAKSVCAAAAAKAMNPDLKVEALEVPVGPDTESTFDDAFWSGLDLVTNALDNVKARLYVDGICVFYRKPLIES 599          
BLAST of mRNA_M-pyrifera_M_contig114516.3029.1 vs. uniprot
Match: A0A813C515_9DINO (UBA1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C515_9DINO)

HSP 1 Score: 200 bits (508), Expect = 4.270e-61
Identity = 110/192 (57.29%), Postives = 134/192 (69.79%), Query Frame = 1
Query:    1 QWLYLDAFDALPPVDGDDAPSADSRAPKGDRYDHLRAMLGQDLVSKLQSRRVFLVGSGALGCEFLKSFCMLGVGCGGARGEXXXXXXXXXXVTVTDMDQIEVSNLNRQFLFRQKDVGQPKSSTAAAAARAMNPDL--RVEAITTPVGTDTESTFNDRFWEGIDVVVNALDNVKARLYVDSQCVWYRRPLLES 570
            QWLY D F+ALP  +    P+A + AP GDRY+    + G D+  +++ +RVFLVG+GALGCE+LKSF   GVG  G +G+          +TVTDMD IE SNLNRQFLFR KDVGQPKS   AAAA+AMNPDL  RV A+   VG DTE  F+D FW  +D+VVNALDNV AR Y+DS+CVWY + LLES
Sbjct:   79 QWLYWDVFEALPKPE----PAA-TFAPTGDRYEFSHVLFGADITKRVREQRVFLVGAGALGCEYLKSFAQAGVGTLG-KGK----------ITVTDMDNIETSNLNRQFLFRNKDVGQPKSVCGAAAAQAMNPDLQGRVVALEERVGADTEDFFDDAFWGEVDLVVNALDNVPARQYMDSRCVWYEKSLLES 254          
BLAST of mRNA_M-pyrifera_M_contig114516.3029.1 vs. uniprot
Match: A0A812YPL5_9DINO (UBA2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YPL5_9DINO)

HSP 1 Score: 202 bits (515), Expect = 9.370e-59
Identity = 110/190 (57.89%), Postives = 140/190 (73.68%), Query Frame = 1
Query:    1 QWLYLDAFDALPPVDGDDAPSADSRAPKGDRYDHLRAMLGQDLVSKLQSRRVFLVGSGALGCEFLKSFCMLGVGCGGARGEXXXXXXXXXXVTVTDMDQIEVSNLNRQFLFRQKDVGQPKSSTAAAAARAMNPDLRVEAITTPVGTDTESTFNDRFWEGIDVVVNALDNVKARLYVDSQCVWYRRPLLES 570
            ++LYLDA  ++P     D   AD  A  G R D   A+ G+D ++KL +++VFLVG+GALGCEFLK+F M+GV C G  G           +TVTDMD IEVSNLNRQFLFR  DVG+PKS TA AA +AMNP L+VEA+ TPVG DTE TF+D FW+G+++VVNALDNV+AR YVDS+CV++++PLLES
Sbjct:  370 EFLYLDALLSVPEA-ARDVTRADDAA--GTRQDVHYAIFGKDFIAKLANQKVFLVGAGALGCEFLKNFAMMGV-CVGGDGR----------LTVTDMDNIEVSNLNRQFLFRSGDVGKPKSVTAGAAVQAMNPALKVEALETPVGNDTEETFHDDFWDGLNIVVNALDNVQARRYVDSKCVFHQKPLLES 545          
BLAST of mRNA_M-pyrifera_M_contig114516.3029.1 vs. uniprot
Match: A0A0G4ENK7_VITBC (UBA_e1_C domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ENK7_VITBC)

HSP 1 Score: 204 bits (520), Expect = 1.150e-57
Identity = 107/190 (56.32%), Postives = 135/190 (71.05%), Query Frame = 1
Query:    1 QWLYLDAFDALPPVDGDDAPSADSRAPKGDRYDHLRAMLGQDLVSKLQSRRVFLVGSGALGCEFLKSFCMLGVGCGGARGEXXXXXXXXXXVTVTDMDQIEVSNLNRQFLFRQKDVGQPKSSTAAAAARAMNPDLRVEAITTPVGTDTESTFNDRFWEGIDVVVNALDNVKARLYVDSQCVWYRRPLLES 570
            QWLY+DAF+ L   +  D  S +SR      YD   A+ GQ    KL + ++FLVG+GALGCEFLK+F ++GV CGG +G+          +TVTDMD+IEVSNLNRQFLFR++ VG+PKS TAAAAA  MN +L+VE+    VG DTE TFND FW+ +D  VNALDN++ARLYVD +CVWY +PLLES
Sbjct:  407 QWLYVDAFECLGKEEATDTASTNSR------YDDQIAIFGQVFQQKLANMKIFLVGAGALGCEFLKNFALMGVCCGG-KGK----------LTVTDMDRIEVSNLNRQFLFRKEHVGKPKSKTAAAAAEEMNKELKVESSEVRVGPDTEDTFNDAFWDSLDCTVNALDNIQARLYVDQRCVWYLKPLLES 579          
BLAST of mRNA_M-pyrifera_M_contig114516.3029.1 vs. uniprot
Match: A0A0G4HTT5_9ALVE (UBA_e1_C domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HTT5_9ALVE)

HSP 1 Score: 203 bits (516), Expect = 4.260e-57
Identity = 108/190 (56.84%), Postives = 129/190 (67.89%), Query Frame = 1
Query:    1 QWLYLDAFDALPPVDGDDAPSADSRAPKGDRYDHLRAMLGQDLVSKLQSRRVFLVGSGALGCEFLKSFCMLGVGCGGARGEXXXXXXXXXXVTVTDMDQIEVSNLNRQFLFRQKDVGQPKSSTAAAAARAMNPDLRVEAITTPVGTDTESTFNDRFWEGIDVVVNALDNVKARLYVDSQCVWYRRPLLES 570
            QWLY+DAF+ +P       P     AP   RYD + ++ GQ     L    +FLVG+GALGCEFLKSF ++G  CG  +            VTVTDMD+IEVSNLNRQFLFR++ VGQPKS TAA+AAR MNP   VEA    VG +TE+TFND FWE   V+VNALDNV+ARLYVDS+CVWY +PLLES
Sbjct:  409 QWLYVDAFELIPD------PIVSDTAPLSCRYDDMISIFGQGFQKTLGEVNMFLVGAGALGCEFLKSFAIMGCSCGPGK------------VTVTDMDRIEVSNLNRQFLFRKQHVGQPKSITAASAAREMNPAFSVEATEVRVGPETETTFNDSFWEAQTVIVNALDNVQARLYVDSRCVWYLKPLLES 580          
BLAST of mRNA_M-pyrifera_M_contig114516.3029.1 vs. uniprot
Match: A0A7S2LQW6_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LQW6_9DINO)

HSP 1 Score: 199 bits (505), Expect = 1.190e-55
Identity = 109/193 (56.48%), Postives = 132/193 (68.39%), Query Frame = 1
Query:    1 QWLYLDAFDALP---PVDGDDAPSADSRAPKGDRYDHLRAMLGQDLVSKLQSRRVFLVGSGALGCEFLKSFCMLGVGCGGARGEXXXXXXXXXXVTVTDMDQIEVSNLNRQFLFRQKDVGQPKSSTAAAAARAMNPDLRVEAITTPVGTDTESTFNDRFWEGIDVVVNALDNVKARLYVDSQCVWYRRPLLES 570
            QWLY D F+ +P   P D           P G RYD   A+LGQ    ++ + +VFLVG+GALGCE+LK   M+G  CG A G+          VTVTDMD+IEVSNLNRQFLFRQ DVGQPKS TAA AA+AMN  L+V A+   VG DTE TF+D FW G+D VVNALDN++AR+YVDS+CVW+ +PLLES
Sbjct:  418 QWLYFDMFELVPSELPADWQ---------PLGSRYDDQVAILGQAFQERVSNLKVFLVGAGALGCEYLKCLAMIGACCG-ADGK----------VTVTDMDRIEVSNLNRQFLFRQGDVGQPKSLTAARAAQAMNGALKVTAMEVRVGVDTEDTFDDPFWMGLDAVVNALDNIQARIYVDSRCVWFAKPLLES 590          
BLAST of mRNA_M-pyrifera_M_contig114516.3029.1 vs. uniprot
Match: A0A1D1ZMI8_AUXPR (UBA_e1_C domain-containing protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZMI8_AUXPR)

HSP 1 Score: 193 bits (491), Expect = 9.990e-54
Identity = 101/190 (53.16%), Postives = 130/190 (68.42%), Query Frame = 1
Query:    1 QWLYLDAFDALPPVDGDDAPSADSRAPKGDRYDHLRAMLGQDLVSKLQSRRVFLVGSGALGCEFLKSFCMLGVGCGGARGEXXXXXXXXXXVTVTDMDQIEVSNLNRQFLFRQKDVGQPKSSTAAAAARAMNPDLRVEAITTPVGTDTESTFNDRFWEGIDVVVNALDNVKARLYVDSQCVWYRRPLLES 570
            QWLY D+ ++LP     + P A   AP+G RYD   A+ G +L +KL + RVFLVG+GALGCEFLK+F ++GV   G              +TVTD D IE SNL+RQFLFR  D+G  KS  A AAAR +NPDLR+ A+   V  +TE+ F+D FW G+D+VVNALDNV ARLYVDS+CV++++PLLES
Sbjct:  407 QWLYFDSIESLPA----EIPEASQLAPRGSRYDDQIAVFGAELQAKLAAARVFLVGAGALGCEFLKNFALMGVASAGGGS-----------LTVTDDDTIERSNLSRQFLFRDWDIGSSKSGVAGAAARRINPDLRLRALQNRVSPETEAVFDDAFWGGLDLVVNALDNVNARLYVDSRCVYFQKPLLES 581          
BLAST of mRNA_M-pyrifera_M_contig114516.3029.1 vs. uniprot
Match: M4BZC0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZC0_HYAAE)

HSP 1 Score: 193 bits (490), Expect = 1.410e-53
Identity = 105/193 (54.40%), Postives = 126/193 (65.28%), Query Frame = 1
Query:    1 QWLYLDAFDALP---PVDGDDAPSADSRAPKGDRYDHLRAMLGQDLVSKLQSRRVFLVGSGALGCEFLKSFCMLGVGCGGARGEXXXXXXXXXXVTVTDMDQIEVSNLNRQFLFRQKDVGQPKSSTAAAAARAMNPDLRVEAITTPVGTDTESTFNDRFWEGIDVVVNALDNVKARLYVDSQCVWYRRPLLES 570
            QWL+LDAF+ LP   P D D         P G RYDH+ A  G  +  KL + R FLVG GALGCE+LK+F M+G+ CG               +TVTD D+IEVSNLNRQFLFR+ +VGQPKS  A AA R MN DL V+ +   V   TE+ FND FW G+DVV NALDNV ARLYVDS+CV+++ PLLES
Sbjct:  359 QWLHLDAFEVLPDERPTDAD---------PIGSRYDHVIAAFGLSVQQKLGNVRTFLVGCGALGCEYLKNFAMIGIACG-----------ENGLITVTDNDRIEVSNLNRQFLFREHNVGQPKSVAATAAVRQMNSDLNVKTLEHLVAPHTENVFNDDFWTGLDVVTNALDNVTARLYVDSKCVFHKLPLLES 531          
BLAST of mRNA_M-pyrifera_M_contig114516.3029.1 vs. uniprot
Match: A0A7L3PUF7_9DEND (UBA1 enzyme (Fragment) n=1 Tax=Xiphorhynchus elegans TaxID=269412 RepID=A0A7L3PUF7_9DEND)

HSP 1 Score: 188 bits (478), Expect = 3.160e-53
Identity = 101/190 (53.16%), Postives = 128/190 (67.37%), Query Frame = 1
Query:    1 QWLYLDAFDALPPVDGDDAPSADSRAPKGDRYDHLRAMLGQDLVSKLQSRRVFLVGSGALGCEFLKSFCMLGVGCGGARGEXXXXXXXXXXVTVTDMDQIEVSNLNRQFLFRQKDVGQPKSSTAAAAARAMNPDLRVEAITTPVGTDTESTFNDRFWEGIDVVVNALDNVKARLYVDSQCVWYRRPLLES 570
            QWLY DA + LP  + D   + +   P+  RYD   A+ G +L +KL +++ F+VG+GA+GCE LK+F M+G+GCG               VTVTDMD IE SNLNRQFLFR  DV + KS  AAAAAR MNP LRV + T  VG DTE  ++D F+EG+D V NALDNV ARLY+D +CV+YR+PLLES
Sbjct:   12 QWLYFDALECLPEENRDSLLTEEQCRPRNSRYDGQIAVFGAELQAKLGAQKYFVVGAGAIGCELLKNFAMVGLGCG-----------PEGSVTVTDMDTIEKSNLNRQFLFRPWDVTKLKSERAAAAAREMNPALRVSSRTDRVGPDTERVYDDDFFEGLDGVANALDNVDARLYMDRRCVYYRKPLLES 190          
BLAST of mRNA_M-pyrifera_M_contig114516.3029.1 vs. uniprot
Match: A0A8D0GZW5_SPHPU (Ubiquitin like modifier activating enzyme 1 n=1 Tax=Sphenodon punctatus TaxID=8508 RepID=A0A8D0GZW5_SPHPU)

HSP 1 Score: 188 bits (478), Expect = 3.450e-53
Identity = 103/190 (54.21%), Postives = 129/190 (67.89%), Query Frame = 1
Query:    1 QWLYLDAFDALPPVDGDDAPSADSRAPKGDRYDHLRAMLGQDLVSKLQSRRVFLVGSGALGCEFLKSFCMLGVGCGGARGEXXXXXXXXXXVTVTDMDQIEVSNLNRQFLFRQKDVGQPKSSTAAAAARAMNPDLRVEAITTPVGTDTESTFNDRFWEGIDVVVNALDNVKARLYVDSQCVWYRRPLLES 570
            QWLY DA + LP  +  DA S +  +PK  RYD   A+ G D  +KL  ++ FLVG+GA+GCE LK+F M+G+GCG A G           VTVTDMD IE SNLNRQFLFR  DV + KS TAAAA R MNPD+ + +    VG DTE  ++D F+EG+D V NALDNV AR+Y+D +CV+YR+PLLES
Sbjct:  218 QWLYFDALECLP--EEKDALSEEKCSPKSCRYDGQVAVFGSDFQAKLGRQKYFLVGAGAIGCELLKNFAMMGLGCG-AGGR----------VTVTDMDTIEKSNLNRQFLFRPWDVTKMKSDTAAAAVREMNPDIHITSHQDRVGPDTERVYDDEFFEGLDGVANALDNVDARMYMDRRCVYYRKPLLES 394          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114516.3029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8ENQ4_CAFRO9.720e-6260.94UBA_e1_C domain-containing protein n=5 Tax=Sar Tax... [more]
A0A813C515_9DINO4.270e-6157.29UBA1 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A812YPL5_9DINO9.370e-5957.89UBA2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A0G4ENK7_VITBC1.150e-5756.32UBA_e1_C domain-containing protein n=1 Tax=Vitrell... [more]
A0A0G4HTT5_9ALVE4.260e-5756.84UBA_e1_C domain-containing protein n=1 Tax=Chromer... [more]
A0A7S2LQW6_9DINO1.190e-5556.48Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A1D1ZMI8_AUXPR9.990e-5453.16UBA_e1_C domain-containing protein n=3 Tax=Auxenoc... [more]
M4BZC0_HYAAE1.410e-5354.40Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7L3PUF7_9DEND3.160e-5353.16UBA1 enzyme (Fragment) n=1 Tax=Xiphorhynchus elega... [more]
A0A8D0GZW5_SPHPU3.450e-5354.21Ubiquitin like modifier activating enzyme 1 n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114516contigM-pyrifera_M_contig114516:2..571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score196.1
Seed ortholog evalue1.5e-47
Seed eggNOG ortholog3075.A0A087SHD2
Preferred nameUBA1
KEGG koko:K03178
KEGG Pathwayko04120,ko05012,map04120,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006464,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009506,GO:0009605,GO:0009607,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0030054,GO:0032446,GO:0033554,GO:0036211,GO:0042221,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046686,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0070647,GO:0071704,GO:0071944,GO:0140096,GO:1901564
EggNOG free text desc.Belongs to the ubiquitin-activating E1 family
EggNOG OGs34H3A@3041,37Q5I@33090,COG0476@1,KOG2012@2759
EC6.2.1.45
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Exons1
Model size570
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.6370745-CDS-M-pyrifera_M_contig114516:1..5711622815661.6370745-CDS-M-pyrifera_M_contig114516:1..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114516 2..571 -
1692277510.030894-CDS-M-pyrifera_M_contig114516:1..5711692277510.030894-CDS-M-pyrifera_M_contig114516:1..571Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114516 2..571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114516.3029.1prot_M-pyrifera_M_contig114516.3029.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114516 2..571 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114516.3029.1

>prot_M-pyrifera_M_contig114516.3029.1 ID=prot_M-pyrifera_M_contig114516.3029.1|Name=mRNA_M-pyrifera_M_contig114516.3029.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=190bp
QWLYLDAFDALPPVDGDDAPSADSRAPKGDRYDHLRAMLGQDLVSKLQSR
RVFLVGSGALGCEFLKSFCMLGVGCGGARGEGDGGDADAGYVTVTDMDQI
EVSNLNRQFLFRQKDVGQPKSSTAAAAARAMNPDLRVEAITTPVGTDTES
TFNDRFWEGIDVVVNALDNVKARLYVDSQCVWYRRPLLES
back to top

mRNA from alignment at M-pyrifera_M_contig114516:2..571-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114516.3029.1 ID=mRNA_M-pyrifera_M_contig114516.3029.1|Name=mRNA_M-pyrifera_M_contig114516.3029.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig114516:2..571- (Macrocystis pyrifera P11B4 male)
CAATGGTTGTACTTGGATGCATTTGATGCGCTTCCACCAGTGGATGGCGA TGACGCACCTTCTGCAGATTCTCGTGCTCCAAAGGGCGATCGATATGATC ATTTGCGCGCTATGCTTGGACAAGATCTTGTCAGCAAGCTGCAATCACGA CGCGTGTTCCTTGTTGGATCAGGTGCATTGGGTTGTGAATTCCTCAAGAG CTTTTGCATGCTTGGTGTAGGATGTGGTGGTGCACGAGGGGAAGGAGATG GTGGAGATGCTGATGCTGGCTATGTGACGGTGACAGACATGGATCAAATT GAAGTTTCCAACCTCAACCGTCAATTCCTCTTCCGTCAAAAGGATGTGGG ACAACCAAAGTCATCCACTGCAGCAGCAGCAGCACGTGCGATGAACCCAG ATTTGCGTGTCGAAGCAATCACAACTCCAGTTGGAACTGATACGGAATCC ACCTTCAATGATCGCTTCTGGGAAGGAATTGATGTGGTTGTGAACGCTTT GGACAATGTCAAGGCTCGTCTCTATGTCGATTCTCAATGTGTGTGGTATC GTCGCCCATTGCTTGAAAGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig114516:2..571-

>mRNA_M-pyrifera_M_contig114516.3029.1 ID=mRNA_M-pyrifera_M_contig114516.3029.1|Name=mRNA_M-pyrifera_M_contig114516.3029.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1140bp|location=Sequence derived from alignment at M-pyrifera_M_contig114516:2..571- (Macrocystis pyrifera P11B4 male)
CAATGGTTGTACTTGGATGCATTTGATGCGCTTCCACCAGTGGATGGCGA
TGACGCACCTTCTGCAGATTCTCGTGCTCCAAAGGGCGATCGATATGATC
ATTTGCGCGCTATGCTTGGACAAGATCTTGTCAGCAAGCTGCAATCACGA
CGCGTGTTCCTTGTTGGATCAGGTGCATTGGGTTGTGAATTCCTCAAGAG
CTTTTGCATGCTTGGTGTAGGATGTGGTGGTGCACGAGGGGAAGGAGATG
GTGGAGATGCTGATGCTGGCTATGTGACGGTGACAGACATGGATCAAATT
GAAGTTTCCAACCTCAACCGTCAATTCCTCTTCCGTCAAAAGGATGTGGG
ACAACCAAAGTCATCCACTGCAGCAGCAGCAGCACGTGCGATGAACCCAG
ATTTGCGTGTCGAAGCAATCACAACTCCAGTTGGAACTGATACGGAATCC
ACCTTCAATGATCGCTTCTGGGAAGGAATTGATGTGGTTGTGAACGCTTT
GGACAATGTCAAGGCTCGTCTCTATGTCGATTCTCAATGTGTGTGGTATC
GTCGCCCATTGCTTGAAAGTCAATGGTTGTACTTGGATGCATTTGATGCG
CTTCCACCAGTGGATGGCGATGACGCACCTTCTGCAGATTCTCGTGCTCC
AAAGGGCGATCGATATGATCATTTGCGCGCTATGCTTGGACAAGATCTTG
TCAGCAAGCTGCAATCACGACGCGTGTTCCTTGTTGGATCAGGTGCATTG
GGTTGTGAATTCCTCAAGAGCTTTTGCATGCTTGGTGTAGGATGTGGTGG
TGCACGAGGGGAAGGAGATGGTGGAGATGCTGATGCTGGCTATGTGACGG
TGACAGACATGGATCAAATTGAAGTTTCCAACCTCAACCGTCAATTCCTC
TTCCGTCAAAAGGATGTGGGACAACCAAAGTCATCCACTGCAGCAGCAGC
AGCACGTGCGATGAACCCAGATTTGCGTGTCGAAGCAATCACAACTCCAG
TTGGAACTGATACGGAATCCACCTTCAATGATCGCTTCTGGGAAGGAATT
GATGTGGTTGTGAACGCTTTGGACAATGTCAAGGCTCGTCTCTATGTCGA
TTCTCAATGTGTGTGGTATCGTCGCCCATTGCTTGAAAGT
back to top