mRNA_M-pyrifera_M_contig114497.3021.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114497.3021.1
Unique NamemRNA_M-pyrifera_M_contig114497.3021.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114497.3021.1 vs. uniprot
Match: A0A2E7KP96_9PLAN (Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2E7KP96_9PLAN)

HSP 1 Score: 370 bits (949), Expect = 1.130e-125
Identity = 182/190 (95.79%), Postives = 185/190 (97.37%), Query Frame = 1 
Query:    1 LKMKAASKSPHWLKSMTGCLSVSPLNPLWVVQKPTETKRRHDHSIAITIHGRKSELKYQSIDFYPSILELVIDIPESGETLSGNKLALDQITAALNAFSDLPGYLGFAYQLDELYSEIYDNGVSDFVNKSIVNRIKRWPAALPLLKTRFPGFYPFLFGPTGLLKEMKAALEQGTSTREQFHFAEGKHYSG 570
            LKMKAASKS HWLKSMTGCLSVSPLNPLWV+ KPTETKRRHDHSIAITIHGRKSELKYQSIDFYPSILELVIDIPESGETLSGNKLALDQITAALNAFSDLPG LGFAYQLDELYSEIYDNGVSDFVNKS+VNRIKRWPAAL LLKTRFPGFYPFLFGPTGLLKEMK+ALEQ TSTREQFHFAEGKHYSG
Sbjct:   68 LKMKAASKSSHWLKSMTGCLSVSPLNPLWVLPKPTETKRRHDHSIAITIHGRKSELKYQSIDFYPSILELVIDIPESGETLSGNKLALDQITAALNAFSDLPGCLGFAYQLDELYSEIYDNGVSDFVNKSVVNRIKRWPAALSLLKTRFPGFYPFLFGPTGLLKEMKSALEQRTSTREQFHFAEGKHYSG 257
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114497.3021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2E7KP96_9PLAN1.130e-12595.79Uncharacterized protein n=1 Tax=Gimesia sp. TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114497contigM-pyrifera_M_contig114497:3..572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size570
Cds size564
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.235175-CDS-M-pyrifera_M_contig114497:2..5661622815661.235175-CDS-M-pyrifera_M_contig114497:2..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114497 3..566 -
1692277509.8588254-CDS-M-pyrifera_M_contig114497:2..5661692277509.8588254-CDS-M-pyrifera_M_contig114497:2..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114497 3..566 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.2513406-UTR-M-pyrifera_M_contig114497:566..5721622815661.2513406-UTR-M-pyrifera_M_contig114497:566..572Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114497 567..572 -
1692277509.870793-UTR-M-pyrifera_M_contig114497:566..5721692277509.870793-UTR-M-pyrifera_M_contig114497:566..572Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114497 567..572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114497.3021.1prot_M-pyrifera_M_contig114497.3021.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114497 3..566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114497.3021.1

>prot_M-pyrifera_M_contig114497.3021.1 ID=prot_M-pyrifera_M_contig114497.3021.1|Name=mRNA_M-pyrifera_M_contig114497.3021.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=188bp
MKAASKSPHWLKSMTGCLSVSPLNPLWVVQKPTETKRRHDHSIAITIHGR
KSELKYQSIDFYPSILELVIDIPESGETLSGNKLALDQITAALNAFSDLP
GYLGFAYQLDELYSEIYDNGVSDFVNKSIVNRIKRWPAALPLLKTRFPGF
YPFLFGPTGLLKEMKAALEQGTSTREQFHFAEGKHYSG
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mRNA from alignment at M-pyrifera_M_contig114497:3..572-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114497.3021.1 ID=mRNA_M-pyrifera_M_contig114497.3021.1|Name=mRNA_M-pyrifera_M_contig114497.3021.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig114497:3..572- (Macrocystis pyrifera P11B4 male)
CTGAAAATGAAGGCCGCTTCGAAATCACCACACTGGTTGAAGTCAATGAC
TGGATGTCTGTCTGTTTCGCCTCTGAATCCCCTCTGGGTGGTACAAAAGC
CAACAGAAACGAAGCGACGACACGACCACTCTATTGCTATCACTATCCAT
GGCAGAAAGTCAGAGCTGAAATACCAGTCGATTGATTTTTATCCTTCGAT
CCTCGAACTGGTCATAGACATTCCTGAATCAGGAGAAACGCTGTCTGGTA
ACAAGCTTGCCCTGGATCAGATTACAGCCGCTCTGAATGCGTTTTCTGAT
TTACCAGGCTACCTCGGCTTTGCCTATCAATTAGATGAGTTGTATTCAGA
GATTTATGATAACGGCGTTTCAGATTTTGTTAATAAATCCATCGTCAATC
GCATCAAAAGATGGCCCGCCGCTCTTCCCCTGCTGAAAACCAGGTTTCCC
GGTTTCTATCCATTTCTCTTTGGCCCCACCGGGTTATTGAAAGAAATGAA
AGCAGCGCTGGAACAGGGAACATCAACACGGGAACAATTTCATTTTGCTG
AGGGGAAACACTACTCTGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114497:3..572-

>mRNA_M-pyrifera_M_contig114497.3021.1 ID=mRNA_M-pyrifera_M_contig114497.3021.1|Name=mRNA_M-pyrifera_M_contig114497.3021.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1128bp|location=Sequence derived from alignment at M-pyrifera_M_contig114497:3..572- (Macrocystis pyrifera P11B4 male)
ATGAAGGCCGCTTCGAAATCACCACACTGGTTGAAGTCAATGACTGGATG
TCTGTCTGTTTCGCCTCTGAATCCCCTCTGGGTGGTACAAAAGCCAACAG
AAACGAAGCGACGACACGACCACTCTATTGCTATCACTATCCATGGCAGA
AAGTCAGAGCTGAAATACCAGTCGATTGATTTTTATCCTTCGATCCTCGA
ACTGGTCATAGACATTCCTGAATCAGGAGAAACGCTGTCTGGTAACAAGC
TTGCCCTGGATCAGATTACAGCCGCTCTGAATGCGTTTTCTGATTTACCA
GGCTACCTCGGCTTTGCCTATCAATTAGATGAGTTGTATTCAGAGATTTA
TGATAACGGCGTTTCAGATTTTGTTAATAAATCCATCGTCAATCGCATCA
AAAGATGGCCCGCCGCTCTTCCCCTGCTGAAAACCAGGTTTCCCGGTTTC
TATCCATTTCTCTTTGGCCCCACCGGGTTATTGAAAGAAATGAAAGCAGC
GCTGGAACAGGGAACATCAACACGGGAACAATTTCATTTTGCTGAGGGGA
AACACTACTCTGGAATGAAGGCCGCTTCGAAATCACCACACTGGTTGAAG
TCAATGACTGGATGTCTGTCTGTTTCGCCTCTGAATCCCCTCTGGGTGGT
ACAAAAGCCAACAGAAACGAAGCGACGACACGACCACTCTATTGCTATCA
CTATCCATGGCAGAAAGTCAGAGCTGAAATACCAGTCGATTGATTTTTAT
CCTTCGATCCTCGAACTGGTCATAGACATTCCTGAATCAGGAGAAACGCT
GTCTGGTAACAAGCTTGCCCTGGATCAGATTACAGCCGCTCTGAATGCGT
TTTCTGATTTACCAGGCTACCTCGGCTTTGCCTATCAATTAGATGAGTTG
TATTCAGAGATTTATGATAACGGCGTTTCAGATTTTGTTAATAAATCCAT
CGTCAATCGCATCAAAAGATGGCCCGCCGCTCTTCCCCTGCTGAAAACCA
GGTTTCCCGGTTTCTATCCATTTCTCTTTGGCCCCACCGGGTTATTGAAA
GAAATGAAAGCAGCGCTGGAACAGGGAACATCAACACGGGAACAATTTCA
TTTTGCTGAGGGGAAACACTACTCTGGA
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