mRNA_M-pyrifera_M_contig114496.3020.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114496.3020.1
Unique NamemRNA_M-pyrifera_M_contig114496.3020.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114496.3020.1 vs. uniprot
Match: A0A835T2T5_9CHLO (EF-hand domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T2T5_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 1.590e-9
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    7 LKCEGDTVNRM-LWMGIPIVLVFSIGLPIAVGVYLWRLGPQRLYEDSNLRSRLGFLYLGYNPNYPFWESVTALRKVLL 237
            L+C     N + + + +P+V+VFS+G+P+A GV+L R    RL  D    ++ GF+Y  Y P Y +WES+   RK+++
Sbjct: 3861 LQCFRGVHNYLAMGLALPLVVVFSLGVPVASGVFL-RYNRSRLENDPAFAAKYGFVYGEYRPRYFYWESIIMFRKLIM 3937          
BLAST of mRNA_M-pyrifera_M_contig114496.3020.1 vs. uniprot
Match: A8JCD9_CHLRE (Probable pectate lyase C n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JCD9_CHLRE)

HSP 1 Score: 58.5 bits (140), Expect = 3.600e-8
Identity = 27/78 (34.62%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    7 LKCEGDTVNRM-LWMGIPIVLVFSIGLPIAVGVYLWRLGPQRLYEDSNLRSRLGFLYLGYNPNYPFWESVTALRKVLL 237
            L+C     N + + + +P+V+VFS+G+P A  ++LW     RL  D    ++ GF++  Y P Y +WES+  LRK+++
Sbjct: 2000 LECFKGVHNFLAMALALPLVVVFSLGVPAASALFLWY-NRDRLENDPAFAAKYGFVFGEYRPQYFYWESIIMLRKLVM 2076          
BLAST of mRNA_M-pyrifera_M_contig114496.3020.1 vs. uniprot
Match: A0A812TU10_9DINO (Nramp1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812TU10_9DINO)

HSP 1 Score: 58.5 bits (140), Expect = 3.610e-8
Identity = 30/81 (37.04%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    1 MGLKCEGDTVNRMLWMGIPIV--LVFSIGLPIAVGVYLWRLGPQRLYEDSNLRSRLGFLYLGYNPNYPFWESVTALRKVLL 237
            +G++C+ D  + M W+G+  V  +V+ IG+P+A+ + L+R+  +RL+  + +R R GFLY G+   Y ++ESV   RKV++
Sbjct: 1623 LGVECKSD--SHMQWLGLSTVGLVVYGIGVPVALFIALFRV-RKRLFR-AEVRKRFGFLYNGFELRYYYFESVYMFRKVMI 1699          
BLAST of mRNA_M-pyrifera_M_contig114496.3020.1 vs. uniprot
Match: A0A2K3DKD0_CHLRE (EF-hand domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DKD0_CHLRE)

HSP 1 Score: 58.5 bits (140), Expect = 3.630e-8
Identity = 27/78 (34.62%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    7 LKCEGDTVNRM-LWMGIPIVLVFSIGLPIAVGVYLWRLGPQRLYEDSNLRSRLGFLYLGYNPNYPFWESVTALRKVLL 237
            L+C     N + + + +P+V+VFS+G+P A  ++LW     RL  D    ++ GF++  Y P Y +WES+  LRK+++
Sbjct: 5459 LECFKGVHNFLAMALALPLVVVFSLGVPAASALFLWY-NRDRLENDPAFAAKYGFVFGEYRPQYFYWESIIMLRKLVM 5535          
BLAST of mRNA_M-pyrifera_M_contig114496.3020.1 vs. uniprot
Match: A0A835TAT9_CHLIN (EF-hand domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835TAT9_CHLIN)

HSP 1 Score: 58.2 bits (139), Expect = 4.960e-8
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 1
Query:   28 VNRMLWMGI--PIVLVFSIGLPIAVGVYLWRLGPQRLYEDSNLRSRLGFLYLGYNPNYPFWESVTALRKVLL 237
            V+R L M +  P+V+VFS+G+P+A  V+LW     RL  D    ++ GF+Y  Y   Y +WES+   RK+L+
Sbjct: 5395 VHRYLAMALALPLVVVFSLGVPVASAVFLW-FSRGRLEHDPAFAAKYGFVYGEYRLQYFYWESIIMFRKLLM 5465          
BLAST of mRNA_M-pyrifera_M_contig114496.3020.1 vs. uniprot
Match: A0A699ZQV0_HAELA (Uncharacterized protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZQV0_HAELA)

HSP 1 Score: 52.4 bits (124), Expect = 4.090e-7
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 1
Query:   37 MLWMGIPIVLVFSIGLPIAVGVYL-WRLGPQRLYEDSNLRSRLGFLYLGYNPNYPFWESVTALRKVLL 237
            +L +GIP +L++S+GLP+   + L W     RLY+    RS   FLY  Y   Y +WESV  LRK LL
Sbjct:    7 VLTLGIPGLLLYSLGLPLLTALLLHWC--RARLYQVG-FRSLFSFLYQDYEEKYAYWESVVMLRKFLL 71          
BLAST of mRNA_M-pyrifera_M_contig114496.3020.1 vs. uniprot
Match: A0A812RGU8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812RGU8_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 8.200e-7
Identity = 27/79 (34.18%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 MGLKCEGDTVNRMLWMGIPIVLVFSIGLPIAVGVYLWRLGPQRLYEDSNLRSRLGFLYLGYNPNYPFWESVTALRKVLL 237
            +G++C+  T  + L +    ++V+ IG+P+A+ + L+R+  +RL+  + +R R GFLY G+   Y ++ESV   RKV++
Sbjct: 1298 LGVECKSTTHMQWLCLSTVGLVVYGIGVPVALFIALFRV-RKRLFH-AEVRKRFGFLYNGFELRYYYFESVYMFRKVMI 1374          
BLAST of mRNA_M-pyrifera_M_contig114496.3020.1 vs. uniprot
Match: A0A813AXD8_9DINO (Nramp1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AXD8_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 8.210e-7
Identity = 27/79 (34.18%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 MGLKCEGDTVNRMLWMGIPIVLVFSIGLPIAVGVYLWRLGPQRLYEDSNLRSRLGFLYLGYNPNYPFWESVTALRKVLL 237
            +G++C+  T  + L +    ++V+ IG+P+A+ + L+R+  +RL+  + +R R GFLY G+   Y ++ESV   RKV++
Sbjct: 1567 LGVECKSTTHMQWLCLSTVGLVVYGIGVPVALFIALFRV-RKRLFH-AEVRKRFGFLYNGFELRYYYFESVYMFRKVMI 1643          
BLAST of mRNA_M-pyrifera_M_contig114496.3020.1 vs. uniprot
Match: A0A812QQ72_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812QQ72_9DINO)

HSP 1 Score: 54.7 bits (130), Expect = 8.220e-7
Identity = 27/79 (34.18%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 MGLKCEGDTVNRMLWMGIPIVLVFSIGLPIAVGVYLWRLGPQRLYEDSNLRSRLGFLYLGYNPNYPFWESVTALRKVLL 237
            +G++C+  T  + L +    ++V+ IG+P+A+ + L+R+  +RL+  + +R R GFLY G+   Y ++ESV   RKV++
Sbjct: 2057 LGVECKSTTHMQWLCLSTVGLVVYGIGVPVALFIALFRV-RKRLFH-AEVRKRFGFLYNGFELRYYYFESVYMFRKVMI 2133          
BLAST of mRNA_M-pyrifera_M_contig114496.3020.1 vs. uniprot
Match: A0A1Q9C8G7_SYMMI (Metal transporter nramp1-like n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9C8G7_SYMMI)

HSP 1 Score: 54.7 bits (130), Expect = 8.250e-7
Identity = 27/79 (34.18%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 MGLKCEGDTVNRMLWMGIPIVLVFSIGLPIAVGVYLWRLGPQRLYEDSNLRSRLGFLYLGYNPNYPFWESVTALRKVLL 237
            +G++C+  T  + L +    ++V+ IG+P+A+ + L+R+  +RL+  + +R R GFLY G+   Y ++ESV   RKV++
Sbjct: 2989 LGVECKSTTHMQWLCLSTVGLVVYGIGVPVALFIALFRV-RKRLFH-AEVRKRFGFLYNGFELRYYYFESVYMFRKVMI 3065          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114496.3020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A835T2T5_9CHLO1.590e-937.18EF-hand domain-containing protein n=1 Tax=Chlamydo... [more]
A8JCD9_CHLRE3.600e-834.62Probable pectate lyase C n=1 Tax=Chlamydomonas rei... [more]
A0A812TU10_9DINO3.610e-837.04Nramp1 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A2K3DKD0_CHLRE3.630e-834.62EF-hand domain-containing protein n=1 Tax=Chlamydo... [more]
A0A835TAT9_CHLIN4.960e-840.28EF-hand domain-containing protein n=1 Tax=Chlamydo... [more]
A0A699ZQV0_HAELA4.090e-744.12Uncharacterized protein (Fragment) n=1 Tax=Haemato... [more]
A0A812RGU8_9DINO8.200e-734.18Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A813AXD8_9DINO8.210e-734.18Nramp1 protein (Fragment) n=1 Tax=Symbiodinium sp.... [more]
A0A812QQ72_9DINO8.220e-734.18Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A1Q9C8G7_SYMMI8.250e-734.18Metal transporter nramp1-like n=2 Tax=Symbiodinium... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114496contigM-pyrifera_M_contig114496:15..251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size237
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.1907413-CDS-M-pyrifera_M_contig114496:14..2511622815661.1907413-CDS-M-pyrifera_M_contig114496:14..251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114496 15..251 -
1692277509.849149-CDS-M-pyrifera_M_contig114496:14..2511692277509.849149-CDS-M-pyrifera_M_contig114496:14..251Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114496 15..251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114496.3020.1prot_M-pyrifera_M_contig114496.3020.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114496 15..251 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114496.3020.1

>prot_M-pyrifera_M_contig114496.3020.1 ID=prot_M-pyrifera_M_contig114496.3020.1|Name=mRNA_M-pyrifera_M_contig114496.3020.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
MGLKCEGDTVNRMLWMGIPIVLVFSIGLPIAVGVYLWRLGPQRLYEDSNL
RSRLGFLYLGYNPNYPFWESVTALRKVLL
back to top

mRNA from alignment at M-pyrifera_M_contig114496:15..251-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114496.3020.1 ID=mRNA_M-pyrifera_M_contig114496.3020.1|Name=mRNA_M-pyrifera_M_contig114496.3020.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig114496:15..251- (Macrocystis pyrifera P11B4 male)
ATGGGACTAAAATGTGAAGGGGACACCGTAAATCGTATGCTGTGGATGGG TATTCCAATTGTCCTTGTATTTTCGATCGGATTACCAATTGCCGTGGGTG TGTACTTGTGGAGACTAGGCCCACAACGACTATATGAGGATAGCAATTTG AGATCCAGACTAGGGTTCTTATACCTTGGTTACAATCCAAACTATCCATT TTGGGAGAGTGTAACTGCTCTCCGAAAAGTCCTCTTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig114496:15..251-

>mRNA_M-pyrifera_M_contig114496.3020.1 ID=mRNA_M-pyrifera_M_contig114496.3020.1|Name=mRNA_M-pyrifera_M_contig114496.3020.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig114496:15..251- (Macrocystis pyrifera P11B4 male)
ATGGGACTAAAATGTGAAGGGGACACCGTAAATCGTATGCTGTGGATGGG
TATTCCAATTGTCCTTGTATTTTCGATCGGATTACCAATTGCCGTGGGTG
TGTACTTGTGGAGACTAGGCCCACAACGACTATATGAGGATAGCAATTTG
AGATCCAGACTAGGGTTCTTATACCTTGGTTACAATCCAAACTATCCATT
TTGGGAGAGTGTAACTGCTCTCCGAAAAGTCCTCTTGATGGGACTAAAAT
GTGAAGGGGACACCGTAAATCGTATGCTGTGGATGGGTATTCCAATTGTC
CTTGTATTTTCGATCGGATTACCAATTGCCGTGGGTGTGTACTTGTGGAG
ACTAGGCCCACAACGACTATATGAGGATAGCAATTTGAGATCCAGACTAG
GGTTCTTATACCTTGGTTACAATCCAAACTATCCATTTTGGGAGAGTGTA
ACTGCTCTCCGAAAAGTCCTCTTG
back to top