mRNA_M-pyrifera_M_contig114490.3017.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114490.3017.1
Unique NamemRNA_M-pyrifera_M_contig114490.3017.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114490.3017.1 vs. uniprot
Match: T1IJ97_STRMM (J domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IJ97_STRMM)

HSP 1 Score: 127 bits (319), Expect = 3.510e-33
Identity = 60/122 (49.18%), Postives = 89/122 (72.95%), Query Frame = 1
Query:   37 YYELLGVSEDATGDDIRKAYRKAALRWHPDKNPGRVEEATRRFRMVNEAFTTLSDPRERAFYDEHKDSIL-AGEKPGEGGGSVGPVDLWRYFSASCFDGY-EGRRGFYQVYGGVFSGVVADE 396
            +YE+LGV   A GD+++KAYRK AL+WHPDKNP  V+EAT +FR++ +A+  L+DP+ERAFYD++++SIL AG++  +       +DL+ YF+ SC+ GY +G  GFY VY  +F  V A++
Sbjct:    6 HYEVLGVPRSADGDELKKAYRKLALQWHPDKNPDNVQEATVQFRIIQQAYAVLADPQERAFYDKYRESILRAGQEKADD-----HLDLFEYFNCSCYSGYNDGENGFYAVYRNLFEKVAAED 122          
BLAST of mRNA_M-pyrifera_M_contig114490.3017.1 vs. uniprot
Match: L1IS71_GUITC (J domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IS71_GUITC)

HSP 1 Score: 125 bits (315), Expect = 5.400e-33
Identity = 69/140 (49.29%), Postives = 94/140 (67.14%), Query Frame = 1
Query:    1 MASGEREGEIVDYYELLGVSEDATGDDIRKAYRKAALRWHPDKNPGRVEEATRRFRMVNEAFTTLSDPRERAFYDEHKDSILAGEKPGEGGGSVGPVDLWRYFSASCFDGY-EGRRGFYQVYGGVFSGVVADEKHWLEKG 417
            M++GE E +    YE+LGV +DAT DD++ AYRKAAL+WHPDKN   VEEAT  F+ +  A+T LSDP ERA+YD H++ IL G    E  G  G +DL+++FS++C+ GY +   GF+ VY  VF  +  DE   LE+G
Sbjct:    1 MSTGEGERKRRCLYEVLGVEKDATADDLKLAYRKAALKWHPDKNADNVEEATEIFKEITNAYTVLSDPNERAWYDSHREQILRGGDGTEEEGDCG-IDLFQFFSSTCYKGYGDEEDGFFSVYRKVFEQI--DE---LEEG 134          
BLAST of mRNA_M-pyrifera_M_contig114490.3017.1 vs. uniprot
Match: H3A7U7_LATCH (Uncharacterized protein n=2 Tax=Latimeria chalumnae TaxID=7897 RepID=H3A7U7_LATCH)

HSP 1 Score: 130 bits (326), Expect = 1.210e-32
Identity = 60/127 (47.24%), Postives = 88/127 (69.29%), Query Frame = 1
Query:   37 YYELLGVSEDATGDDIRKAYRKAALRWHPDKNPGRVEEATRRFRMVNEAFTTLSDPRERAFYDEHKDSILAGEKPGEGGGSVGPVDLWRYFSASCFDGY-EGRRGFYQVYGGVFSGVVADEKHWLEK 414
            +Y++LGV  DAT DD++KAYRK AL+WHPDKN  + EEA  +F+++  A+  LSDP+ERA+YD H++++L G   GE       VDL +YF+ SC+ GY +  +GFY VY  VF  +V +E  +++K
Sbjct:    4 HYDMLGVKRDATDDDLKKAYRKLALKWHPDKNLDKAEEAAEKFKLIQAAYDVLSDPQERAWYDNHREALLKGGVTGEY--QDDSVDLLQYFTVSCYSGYGDDEKGFYTVYRNVFDLIVKEEMEYIDK 128          
BLAST of mRNA_M-pyrifera_M_contig114490.3017.1 vs. uniprot
Match: A0A1Z5KW84_ORNMO (DnaJ-like protein subfamily C member 21 (Fragment) n=1 Tax=Ornithodoros moubata TaxID=6938 RepID=A0A1Z5KW84_ORNMO)

HSP 1 Score: 129 bits (325), Expect = 1.320e-32
Identity = 60/126 (47.62%), Postives = 91/126 (72.22%), Query Frame = 1
Query:   37 YYELLGVSEDATGDDIRKAYRKAALRWHPDKNPGRVEEATRRFRMVNEAFTTLSDPRERAFYDEHKDSILAGEKPGEGGGSVGPVDLWRYFSASCFDGY-EGRRGFYQVYGGVFSGVVADEKHWLE 411
            +YE+LGVS DA  D+++ AYRK AL+WHPDKNP    EAT +F++V +A+  LSDP+ERA+YD+H+++IL G    +       +D++RYF+ASCF GY +G +GFY VY  VF  + A+++ +++
Sbjct:    4 HYEVLGVSRDAAADELKLAYRKLALQWHPDKNPDNATEATEQFKLVQQAYEVLSDPQERAWYDKHREAILKGGLGDDY--KDDSLDVYRYFTASCFCGYGDGEKGFYAVYREVFDKIAAEDRPYMD 127          
BLAST of mRNA_M-pyrifera_M_contig114490.3017.1 vs. uniprot
Match: A0A0P4W4V0_SCYOL (Uncharacterized protein n=3 Tax=Portunidae TaxID=6757 RepID=A0A0P4W4V0_SCYOL)

HSP 1 Score: 130 bits (326), Expect = 1.810e-32
Identity = 60/126 (47.62%), Postives = 91/126 (72.22%), Query Frame = 1
Query:   37 YYELLGVSEDATGDDIRKAYRKAALRWHPDKNPGRVEEATRRFRMVNEAFTTLSDPRERAFYDEHKDSILAGEKPGEGGGSVGPVDLWRYFSASCFDGY-EGRRGFYQVYGGVFSGVVADEKHWLE 411
            +YE+LGV+++A+  D++KAY K AL+WHPDKNP R+EEA  +F+++  A+ TLSDP+ERAFYD ++DSIL G K  EGG     +DL++YFS+ C+ G+ +  +GFY VY  VF  +   +  +++
Sbjct:    4 HYEVLGVAQNASDSDLKKAYYKMALQWHPDKNPDRMEEAKTQFQLIQAAYDTLSDPQERAFYDRNRDSILRG-KASEGGSKPETLDLFKYFSSQCYSGFNDSEKGFYTVYRQVFEKLAVLDMQYMD 128          
BLAST of mRNA_M-pyrifera_M_contig114490.3017.1 vs. uniprot
Match: A0A1I8JR25_9PLAT (Pre-mRNA-splicing factor SPF27 n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8JR25_9PLAT)

HSP 1 Score: 130 bits (327), Expect = 2.040e-32
Identity = 65/133 (48.87%), Postives = 94/133 (70.68%), Query Frame = 1
Query:   13 EREGEIVDYYELLGVSEDATGDDIRKAYRKAALRWHPDKNPGRVEEATRRFRMVNEAFTTLSDPRERAFYDEHKDSILAGEKPGEGGGSVGP---VDLWRYFSASCFDGYE-GRRGFYQVYGGVFSGVVADEK 399
            +R G +  YYELL V   AT D+++KAYR+ ALRWHPDKNP RVEEAT  FR+V +A+ TLSDP+ERA+YD+H++ IL G   G G G       +D++++F+++C+D Y+ G  G++ VY  VFS +  +E+
Sbjct:  404 QRAGGVRCYYELLEVERQATDDELKKAYRRLALRWHPDKNPDRVEEATAHFRLVQKAYETLSDPQERAWYDKHRERILKG---GLGRGDAYQEERLDVFQFFTSACYDDYDDGEEGYFTVYARVFSDLAEEER 533          
BLAST of mRNA_M-pyrifera_M_contig114490.3017.1 vs. uniprot
Match: A0A4Y2FPY3_ARAVE (DnaJ subfamily C member 21 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2FPY3_ARAVE)

HSP 1 Score: 129 bits (324), Expect = 2.040e-32
Identity = 62/126 (49.21%), Postives = 89/126 (70.63%), Query Frame = 1
Query:   37 YYELLGVSEDATGDDIRKAYRKAALRWHPDKNPGRVEEATRRFRMVNEAFTTLSDPRERAFYDEHKDSILAGEKPGEGGGSVGPVDLWRYFSASCFDGY-EGRRGFYQVYGGVFSGVVADEKHWLE 411
            +YE+LGVS D T DD++KAYRK AL WHPDKN  R+ EAT  F+++ +A+ TL DP+ERA+YD HK+ IL G+   E       +++++YF+ASCF GY +  +GFY VY  VF  + A++K +L+
Sbjct:    4 HYEVLGVSPDCTSDDLKKAYRKLALEWHPDKNLHRLSEATETFQLIQQAYETLIDPQERAWYDRHKEEILRGDA--EEAYKDDSLNVYQYFNASCFKGYNDEEKGFYTVYRQVFEKIAAEDKPFLD 127          
BLAST of mRNA_M-pyrifera_M_contig114490.3017.1 vs. uniprot
Match: A0A1I8IV07_9PLAT (Uncharacterized protein n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8IV07_9PLAT)

HSP 1 Score: 130 bits (327), Expect = 2.460e-32
Identity = 65/133 (48.87%), Postives = 94/133 (70.68%), Query Frame = 1
Query:   13 EREGEIVDYYELLGVSEDATGDDIRKAYRKAALRWHPDKNPGRVEEATRRFRMVNEAFTTLSDPRERAFYDEHKDSILAGEKPGEGGGSVGP---VDLWRYFSASCFDGYE-GRRGFYQVYGGVFSGVVADEK 399
            +R G +  YYELL V   AT D+++KAYR+ ALRWHPDKNP RVEEAT  FR+V +A+ TLSDP+ERA+YD+H++ IL G   G G G       +D++++F+++C+D Y+ G  G++ VY  VFS +  +E+
Sbjct:  387 QRAGGVRCYYELLEVERQATDDELKKAYRRLALRWHPDKNPDRVEEATAHFRLVQKAYETLSDPQERAWYDKHRERILKG---GLGRGDAYQEERLDVFQFFTSACYDDYDDGEEGYFTVYARVFSDLAEEER 516          
BLAST of mRNA_M-pyrifera_M_contig114490.3017.1 vs. uniprot
Match: A0A1I8H8V6_9PLAT (Pre-mRNA-splicing factor SPF27 n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8H8V6_9PLAT)

HSP 1 Score: 130 bits (327), Expect = 2.510e-32
Identity = 65/133 (48.87%), Postives = 94/133 (70.68%), Query Frame = 1
Query:   13 EREGEIVDYYELLGVSEDATGDDIRKAYRKAALRWHPDKNPGRVEEATRRFRMVNEAFTTLSDPRERAFYDEHKDSILAGEKPGEGGGSVGP---VDLWRYFSASCFDGYE-GRRGFYQVYGGVFSGVVADEK 399
            +R G +  YYELL V   AT D+++KAYR+ ALRWHPDKNP RVEEAT  FR+V +A+ TLSDP+ERA+YD+H++ IL G   G G G       +D++++F+++C+D Y+ G  G++ VY  VFS +  +E+
Sbjct:  636 QRAGGVRCYYELLEVERQATDDELKKAYRRLALRWHPDKNPDRVEEATAHFRLVQKAYETLSDPQERAWYDKHRERILKG---GLGRGDAYQEERLDVFQFFTSACYDDYDDGEEGYFTVYARVFSDLAEEER 765          
BLAST of mRNA_M-pyrifera_M_contig114490.3017.1 vs. uniprot
Match: A0A1I8IUS1_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8IUS1_9PLAT)

HSP 1 Score: 130 bits (327), Expect = 2.530e-32
Identity = 65/133 (48.87%), Postives = 94/133 (70.68%), Query Frame = 1
Query:   13 EREGEIVDYYELLGVSEDATGDDIRKAYRKAALRWHPDKNPGRVEEATRRFRMVNEAFTTLSDPRERAFYDEHKDSILAGEKPGEGGGSVGP---VDLWRYFSASCFDGYE-GRRGFYQVYGGVFSGVVADEK 399
            +R G +  YYELL V   AT D+++KAYR+ ALRWHPDKNP RVEEAT  FR+V +A+ TLSDP+ERA+YD+H++ IL G   G G G       +D++++F+++C+D Y+ G  G++ VY  VFS +  +E+
Sbjct:  359 QRAGGVRCYYELLEVERQATDDELKKAYRRLALRWHPDKNPDRVEEATAHFRLVQKAYETLSDPQERAWYDKHRERILKG---GLGRGDAYQEERLDVFQFFTSACYDDYDDGEEGYFTVYARVFSDLAEEER 488          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114490.3017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
T1IJ97_STRMM3.510e-3349.18J domain-containing protein n=1 Tax=Strigamia mari... [more]
L1IS71_GUITC5.400e-3349.29J domain-containing protein n=1 Tax=Guillardia the... [more]
H3A7U7_LATCH1.210e-3247.24Uncharacterized protein n=2 Tax=Latimeria chalumna... [more]
A0A1Z5KW84_ORNMO1.320e-3247.62DnaJ-like protein subfamily C member 21 (Fragment)... [more]
A0A0P4W4V0_SCYOL1.810e-3247.62Uncharacterized protein n=3 Tax=Portunidae TaxID=6... [more]
A0A1I8JR25_9PLAT2.040e-3248.87Pre-mRNA-splicing factor SPF27 n=1 Tax=Macrostomum... [more]
A0A4Y2FPY3_ARAVE2.040e-3249.21DnaJ subfamily C member 21 n=1 Tax=Araneus ventric... [more]
A0A1I8IV07_9PLAT2.460e-3248.87Uncharacterized protein n=3 Tax=Macrostomum lignan... [more]
A0A1I8H8V6_9PLAT2.510e-3248.87Pre-mRNA-splicing factor SPF27 n=2 Tax=Macrostomum... [more]
A0A1I8IUS1_9PLAT2.530e-3248.87Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114490contigM-pyrifera_M_contig114490:35..564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score131.0
Seed ortholog evalue4.6e-28
Seed eggNOG ortholog7897.ENSLACP00000005718
Preferred nameDNAJC21
KEGG koko:K09506
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006457,GO:0008150,GO:0009987,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:1990904
EggNOG free text desc.zinc ion binding
EggNOG OGs38GN0@33154,3BH5Y@33208,3CTFP@33213,486DQ@7711,4952Y@7742,KOG0717@1,KOG0717@2759
COG Functional cat.O
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03110
Exons2
Model size435
Cds size435
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.0601447-CDS-M-pyrifera_M_contig114490:34..1571622815661.0601447-CDS-M-pyrifera_M_contig114490:34..157Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114490 35..157 +
1692277509.8109653-CDS-M-pyrifera_M_contig114490:34..1571692277509.8109653-CDS-M-pyrifera_M_contig114490:34..157Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114490 35..157 +
1622815661.0747628-CDS-M-pyrifera_M_contig114490:252..5641622815661.0747628-CDS-M-pyrifera_M_contig114490:252..564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114490 253..564 +
1692277509.8204882-CDS-M-pyrifera_M_contig114490:252..5641692277509.8204882-CDS-M-pyrifera_M_contig114490:252..564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114490 253..564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114490.3017.1prot_M-pyrifera_M_contig114490.3017.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114490 35..564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114490.3017.1

>prot_M-pyrifera_M_contig114490.3017.1 ID=prot_M-pyrifera_M_contig114490.3017.1|Name=mRNA_M-pyrifera_M_contig114490.3017.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
MASGEREGEIVDYYELLGVSEDATGDDIRKAYRKAALRWHPDKNPGRVEE
ATRRFRMVNEAFTTLSDPRERAFYDEHKDSILAGEKPGEGGGSVGPVDLW
RYFSASCFDGYEGRRGFYQVYGGVFSGVVADEKHWLEKGRSVRAY
back to top

mRNA from alignment at M-pyrifera_M_contig114490:35..564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114490.3017.1 ID=mRNA_M-pyrifera_M_contig114490.3017.1|Name=mRNA_M-pyrifera_M_contig114490.3017.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=530bp|location=Sequence derived from alignment at M-pyrifera_M_contig114490:35..564+ (Macrocystis pyrifera P11B4 male)
ATGGCGAGCGGAGAACGAGAAGGTGAGATTGTGGATTATTATGAATTGCT TGGTGTGTCTGAAGATGCGACTGGGGACGATATTCGGAAAGCGTATCGAA AGGCGGCTCTCCGTTGGCATCCTGTACGTGAAGTTGTGGGTGGTTTGTTG GGGAATTGTTGGGATGTTGCGTGGGGTGGGTGAAGTATGAGGTGTTTGTT GTGTATTGTGGATTGTAGGACAAGAATCCCGGACGTGTAGAGGAAGCAAC ACGTCGTTTCCGGATGGTGAATGAAGCATTTACTACATTAAGCGATCCTC GGGAGCGGGCGTTCTATGACGAGCACAAGGATTCTATTTTGGCTGGTGAG AAGCCTGGAGAAGGTGGTGGGAGTGTGGGTCCTGTCGACTTGTGGCGATA TTTCAGTGCGTCTTGCTTCGATGGCTATGAGGGGCGGCGTGGATTCTACC AAGTGTATGGTGGTGTGTTTTCTGGGGTGGTGGCAGACGAGAAGCACTGG TTGGAGAAGGGGAGGAGTGTTCGTGCGTAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig114490:35..564+

>mRNA_M-pyrifera_M_contig114490.3017.1 ID=mRNA_M-pyrifera_M_contig114490.3017.1|Name=mRNA_M-pyrifera_M_contig114490.3017.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig114490:35..564+ (Macrocystis pyrifera P11B4 male)
ATGGCGAGCGGAGAACGAGAAGGTGAGATTGTGGATTATTATGAATTGCT
TGGTGTGTCTGAAGATGCGACTGGGGACGATATTCGGAAAGCGTATCGAA
AGGCGGCTCTCCGTTGGCATCCTATGGCGAGCGGAGAACGAGAAGGTGAG
ATTGTGGATTATTATGAATTGCTTGGTGTGTCTGAAGATGCGACTGGGGA
CGATATTCGGAAAGCGTATCGAAAGGCGGCTCTCCGTTGGCATCCTGACA
AGAATCCCGGACGTGTAGAGGAAGCAACACGTCGTTTCCGGATGGTGAAT
GAAGCATTTACTACATTAAGCGATCCTCGGGAGCGGGCGTTCTATGACGA
GCACAAGGATTCTATTTTGGCTGGTGAGAAGCCTGGAGAAGGTGGTGGGA
GTGTGGGTCCTGTCGACTTGTGGCGATATTTCAGTGCGTCTTGCTTCGAT
GGCTATGAGGGGCGGCGTGGATTCTACCAAGTGTATGGTGGTGTGTTTTC
TGGGGTGGTGGCAGACGAGAAGCACTGGTTGGAGAAGGGGAGGAGTGTTC
GTGCGTATGACAAGAATCCCGGACGTGTAGAGGAAGCAACACGTCGTTTC
CGGATGGTGAATGAAGCATTTACTACATTAAGCGATCCTCGGGAGCGGGC
GTTCTATGACGAGCACAAGGATTCTATTTTGGCTGGTGAGAAGCCTGGAG
AAGGTGGTGGGAGTGTGGGTCCTGTCGACTTGTGGCGATATTTCAGTGCG
TCTTGCTTCGATGGCTATGAGGGGCGGCGTGGATTCTACCAAGTGTATGG
TGGTGTGTTTTCTGGGGTGGTGGCAGACGAGAAGCACTGGTTGGAGAAGG
GGAGGAGTGTTCGTGCGTAT
back to top