mRNA_M-pyrifera_M_contig114451.3012.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114451.3012.1
Unique NamemRNA_M-pyrifera_M_contig114451.3012.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114451.3012.1 vs. uniprot
Match: A0A1Q7MTK2_9BACT (AB hydrolase-1 domain-containing protein n=4 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A1Q7MTK2_9BACT)

HSP 1 Score: 220 bits (560), Expect = 1.420e-68
Identity = 105/161 (65.22%), Postives = 125/161 (77.64%), Query Frame = 1 
Query:    1 LQTDAAFNEGWYDQPPLKGLLAFGRVYASWFFSQDFFREGLYRDIGLASIEDVVRLTQRYFLQSDANDLLAMADTWRSGDISANPEFNGDLAAALRAITARAIVLPGATDLYFRVADNALELAQMPNAELRPIPSSWGHTAGFGIHPPDNGFIDQALEELL 483
            L  DAAF +GWYD PP+KGL+AF RVYA W +SQDF+R   YR +GLAS+ DV+R ++  +   DANDLLAM  TW+  DISANP+FNGD AAAL+AI+ RAIV+P ATDLYFR  DN LE+ QMPNA+LRPIPSSWGH AG G +P DN F+D AL ELL
Sbjct:  173 LMADAAFADGWYDTPPVKGLIAFSRVYAGWAYSQDFYRAHEYRKMGLASVADVLRFSEARYRSRDANDLLAMLWTWQHADISANPQFNGDFAAALQAISPRAIVMPSATDLYFRARDNELEVEQMPNAQLRPIPSSWGHAAGRGANPVDNEFVDAALAELL 333
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BLAST of mRNA_M-pyrifera_M_contig114451.3012.1 vs. uniprot
Match: A0A2V8F344_9BACT (AB hydrolase-1 domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8F344_9BACT)

HSP 1 Score: 214 bits (545), Expect = 2.330e-66
Identity = 100/162 (61.73%), Postives = 124/162 (76.54%), Query Frame = 1 
Query:    1 LQTDAAFNEGWYDQPPLKGLLAFGRVYASWFFSQDFFREGLYRDIGLASIEDVVRLTQRYFLQSDANDLLAMADTWRSGDISANPEFNGDLAAALRAITARAIVLPGATDLYFRVADNALELAQMPNAELRPIPSSWGHTAGFGIHPPDNGFIDQALEELLT 486
            L  DAAFN+GWYD PP+KG++AF RVYA W +SQDF+R+  +  +GLASI+DV+R +++ +   DANDLLAM  TW+  D+SAN  F GDL AAL+A+TARAIV+P  TDLYFRV DN LE+  MPNA+LRPIPS WGH AG G +P DN FID AL E+L 
Sbjct:  173 LTADAAFNDGWYDTPPVKGMIAFARVYAGWVYSQDFYRQREHTKLGLASIDDVLRFSEQRYRSRDANDLLAMLWTWQHADVSANDRFKGDLVAALKAVTARAIVMPSETDLYFRVRDNELEVRHMPNAQLRPIPSIWGHAAGRGTNPVDNAFIDAALGEVLA 334
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BLAST of mRNA_M-pyrifera_M_contig114451.3012.1 vs. uniprot
Match: A0A7D4NWT6_9GAMM (Alpha/beta fold hydrolase n=4 Tax=Piscirickettsiaceae TaxID=135616 RepID=A0A7D4NWT6_9GAMM)

HSP 1 Score: 192 bits (489), Expect = 6.580e-58
Identity = 96/164 (58.54%), Postives = 121/164 (73.78%), Query Frame = 1 
Query:    1 LQTDAAFNEGWYDQPPLKGLLAFGRVYASWFFSQDFFREGLYRDIGLASIED-VVRLTQRYFLQSDANDLLAMADTWRSGDISANPEFNGDLAAALRAITARAIVLPGATDLYFRVADNALELAQMPNAELRPIPSSWGHTAGF-GIHPPDNGFIDQALEELLT 486
            L  D AF  GWY++PP KGL A  RVYA W FSQ F+R+ L+R++G +S+ED +V   + +FL+ DAN+LLAM  TW++GDISANP +NGD   AL +ITA+AIV+PGATDLYF   DN  E++ MPNAE RPIPS WGH AG  G++P D  FID AL+ELL 
Sbjct:  173 LTADVAFEHGWYEKPPTKGLRAMARVYAGWGFSQPFYRQELFRELGYSSLEDFLVAFWEGFFLERDANNLLAMLWTWQNGDISANPIYNGDFEKALGSITAKAIVMPGATDLYFPPEDNEYEVSNMPNAEFRPIPSVWGHFAGGPGLNPVDVTFIDDALKELLA 336
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BLAST of mRNA_M-pyrifera_M_contig114451.3012.1 vs. uniprot
Match: UPI0019152CE6 (alpha/beta fold hydrolase n=1 Tax=Dictyobacter formicarum TaxID=2778368 RepID=UPI0019152CE6)

HSP 1 Score: 187 bits (474), Expect = 1.320e-55
Identity = 94/163 (57.67%), Postives = 115/163 (70.55%), Query Frame = 1 
Query:    1 LQTDAAFNEGWYDQPPLKGLLAFGRVYASWFFSQDFFREGLYRDIGLASIED-VVRLTQRYFLQSDANDLLAMADTWRSGDISANPEFNGDLAAALRAITARAIVLPGATDLYFRVADNALELAQMPNAELRPIPSSWGHTAGFGIHPPDNGFIDQALEELLT 486
            L+ DAA+  GWY +PP  GL A GRVYA W FSQ F+RE  YR++G  S+ED +V   + +FL+ DAN+LLAMA TW++ DISANP  NGD   ALR+I ARAIV+PG TDLYF   DN  E  +MPNA  RPI S WGH AG G++P D  FID AL+E+L 
Sbjct:  172 LRADAAWKNGWYTEPPTTGLRAVGRVYAGWGFSQAFYREERYREMGYHSLEDFLVGYWEGFFLKKDANNLLAMAWTWQNADISANPMHNGDFEKALRSIKARAIVMPGRTDLYFTPEDNEYETRRMPNAVFRPIESIWGHFAGAGVNPADTKFIDDALKEVLA 334
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BLAST of mRNA_M-pyrifera_M_contig114451.3012.1 vs. uniprot
Match: A0A6L7TN93_9CHLR (Alpha/beta fold hydrolase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7TN93_9CHLR)

HSP 1 Score: 184 bits (468), Expect = 9.440e-55
Identity = 95/164 (57.93%), Postives = 115/164 (70.12%), Query Frame = 1 
Query:    1 LQTDAAFNEGWYDQPPLKGLLAFGRVYASWFFSQDFFREGLYRDIGLASIED-VVRLTQRYFLQSDANDLLAMADTWRSGDISANPEFNGDLAAALRAITARAIVLPGATDLYFRVADNALELAQMPNAELRPIPSSWGHTAGF-GIHPPDNGFIDQALEELLT 486
            L  D ++  GWYD PP KGL A GRVYA W  SQ F+RE +Y DIG +S+ED +V   +   L +DAND LAM  TW++ DIS N ++NGD AAAL +ITARAIV+PG TDLYF   DN +E++ MPNAELRPI S WGH AG  G +PPD  F+D AL ELL 
Sbjct:  173 LTADDSWANGWYDSPPYKGLRAMGRVYAGWAVSQAFYREEVYLDIGYSSLEDYLVAFWEGRRLFADANDFLAMLRTWQNADISLNDKYNGDFAAALGSITARAIVMPGRTDLYFPPEDNEIEVSMMPNAELRPIESIWGHLAGGPGFNPPDAAFVDAALRELLA 336
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BLAST of mRNA_M-pyrifera_M_contig114451.3012.1 vs. uniprot
Match: UPI001F3038EC (alpha/beta fold hydrolase n=1 Tax=Spiractinospora alimapuensis TaxID=2820884 RepID=UPI001F3038EC)

HSP 1 Score: 184 bits (467), Expect = 1.370e-54
Identity = 90/163 (55.21%), Postives = 116/163 (71.17%), Query Frame = 1 
Query:    1 LQTDAAFNEGWYDQPPLKGLLAFGRVYASWFFSQDFFREGLYRDIGLASIED-VVRLTQRYFLQSDANDLLAMADTWRSGDISANPEFNGDLAAALRAITARAIVLPGATDLYFRVADNALELAQMPNAELRPIPSSWGHTAGFGIHPPDNGFIDQALEELLT 486
            + TDAA+++GWY   P + L A GRVYA W  SQ F+R  L+RD+G  S+ED +V   + +FL+ D N+LLAMA TW++G+++AN  F+GD  AAL +ITARAIV+PG TDLYF   D+  E + MPNAE RPIPS WGH AG G H  D  FIDQAL++LL 
Sbjct:  175 IHTDAAWDDGWYTTKPHRALRAVGRVYAGWGVSQAFYRSELWRDLGFTSLEDFLVGYWEGFFLERDPNNLLAMAKTWQTGNVAANDRFHGDFEAALGSITARAIVMPGQTDLYFTPEDSEYETSLMPNAEFRPIPSVWGHFAGVGAHSTDTNFIDQALKDLLA 337
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BLAST of mRNA_M-pyrifera_M_contig114451.3012.1 vs. uniprot
Match: A0A0H2M753_VARPD (Homoserine O-acetyltransferase n=24 Tax=Variovorax TaxID=34072 RepID=A0A0H2M753_VARPD)

HSP 1 Score: 183 bits (465), Expect = 2.600e-54
Identity = 94/163 (57.67%), Postives = 112/163 (68.71%), Query Frame = 1 
Query:    1 LQTDAAFNEGWYDQPPLKGLLAFGRVYASWFFSQDFFREGLYRDIGLASIED-VVRLTQRYFLQSDANDLLAMADTWRSGDISANPEFNGDLAAALRAITARAIVLPGATDLYFRVADNALELAQMPNAELRPIPSSWGHTAGFGIHPPDNGFIDQALEELLT 486
            L  DAA+N GWY  PP KGL A GRVYA W  SQ F+ + L+R++G +S+ED +V   + +FLQ DAN+LLAM  +W+ GDIS NP F GD   AL AI ARAIV+P   DLYF VADN  E++ MPNAE RPIP  WGH AG G  P D  FID AL+ELL 
Sbjct:  172 LTADAAWNGGWYSTPPSKGLRAVGRVYAGWGLSQPFYMQELWRELGFSSLEDFLVGFWEGFFLQKDANNLLAMLWSWQHGDISDNPVFKGDFKKALGAIKARAIVMPAERDLYFPVADNEWEVSHMPNAECRPIPGVWGHFAGGGSSPVDTRFIDTALKELLA 334
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BLAST of mRNA_M-pyrifera_M_contig114451.3012.1 vs. uniprot
Match: A0A3P3E852_9BURK (Alpha/beta fold hydrolase n=2 Tax=Variovorax beijingensis TaxID=2496117 RepID=A0A3P3E852_9BURK)

HSP 1 Score: 183 bits (465), Expect = 2.600e-54
Identity = 94/163 (57.67%), Postives = 112/163 (68.71%), Query Frame = 1 
Query:    1 LQTDAAFNEGWYDQPPLKGLLAFGRVYASWFFSQDFFREGLYRDIGLASIED-VVRLTQRYFLQSDANDLLAMADTWRSGDISANPEFNGDLAAALRAITARAIVLPGATDLYFRVADNALELAQMPNAELRPIPSSWGHTAGFGIHPPDNGFIDQALEELLT 486
            L  DAA+N GWY  PP KGL A GRVYA W  SQ F+ + L+R++G +S+ED +V   + +FLQ DAN+LLAM  +W+ GDIS NP F GD   AL AI ARAIV+P   DLYF VADN  E++ MPNAE RPIP  WGH AG G  P D  FID AL+ELL 
Sbjct:  172 LTADAAWNGGWYSAPPSKGLRAVGRVYAGWGLSQPFYMQELWRELGFSSLEDFLVGFWEGFFLQKDANNLLAMLWSWQHGDISDNPVFKGDFKKALGAIKARAIVMPAERDLYFPVADNEWEVSHMPNAECRPIPGVWGHFAGGGSSPVDTRFIDTALKELLA 334
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BLAST of mRNA_M-pyrifera_M_contig114451.3012.1 vs. uniprot
Match: A0A7I8ELE9_9CHLR (Homoserine O-acetyltransferase n=1 Tax=Ktedonobacteria bacterium brp13 TaxID=2717365 RepID=A0A7I8ELE9_9CHLR)

HSP 1 Score: 182 bits (461), Expect = 1.210e-53
Identity = 92/163 (56.44%), Postives = 111/163 (68.10%), Query Frame = 1 
Query:    1 LQTDAAFNEGWYDQPPLKGLLAFGRVYASWFFSQDFFREGLYRDIGLASIED-VVRLTQRYFLQSDANDLLAMADTWRSGDISANPEFNGDLAAALRAITARAIVLPGATDLYFRVADNALELAQMPNAELRPIPSSWGHTAGFGIHPPDNGFIDQALEELLT 486
            L+ DAA+N GWY  PP  GL A GRVYA W FSQ F+RE  YR+IG  S+ED +V   + +FL+ DAN+LL+MA TW++GDISAN  +NGD   AL+ I ARA+V+PG TDLYF   DN  E   MPNA  RPI S WGH AG G+   D  FID AL+ LL 
Sbjct:  172 LRADAAWNNGWYTSPPTTGLRAVGRVYAGWGFSQAFYREATYREIGYNSLEDFLVGYWEGFFLKKDANNLLSMAWTWQNGDISANSTYNGDFKKALQRIKARAVVMPGRTDLYFTPEDNEYETKLMPNATFRPIESIWGHFAGGGVSAADTKFIDDALKTLLA 334
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BLAST of mRNA_M-pyrifera_M_contig114451.3012.1 vs. uniprot
Match: A0A191ZFY1_9GAMM (AB hydrolase-1 domain-containing protein n=4 Tax=Chromatiales TaxID=135613 RepID=A0A191ZFY1_9GAMM)

HSP 1 Score: 181 bits (460), Expect = 1.500e-53
Identity = 96/164 (58.54%), Postives = 113/164 (68.90%), Query Frame = 1 
Query:    1 LQTDAAFNEGWYDQPPLKGLLAFGRVYASWFFSQDFFREGLYRDIGLASIED-VVRLTQRYFLQSDANDLLAMADTWRSGDISANPEFNGDLAAALRAITARAIVLPGATDLYFRVADNALELAQMPNAELRPIPSSWGHTAGF-GIHPPDNGFIDQALEELLT 486
            L  DAA+N GWYD PP KGL A  RVYA W FSQ F+RE LY   G +S+ED +V   + +FL  DAN+LLAM  TW+ GDIS NP +NGD   AL AI A+AIV+PG TDLYF   DN  E ++MPNAE RPIPS WGH AG  G++  D  FID AL+ELL 
Sbjct:  173 LTADAAWNNGWYDTPPKKGLRAMARVYAGWGFSQAFYREKLYLQYGYSSLEDFLVAFWEGFFLVKDANNLLAMLWTWQQGDISNNPIYNGDFEKALGAIKAKAIVMPGQTDLYFPPEDNEYEASKMPNAEYRPIPSIWGHFAGGPGMNKVDVKFIDDALKELLA 336
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114451.3012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q7MTK2_9BACT1.420e-6865.22AB hydrolase-1 domain-containing protein n=4 Tax=u... [more]
A0A2V8F344_9BACT2.330e-6661.73AB hydrolase-1 domain-containing protein n=1 Tax=A... [more]
A0A7D4NWT6_9GAMM6.580e-5858.54Alpha/beta fold hydrolase n=4 Tax=Piscirickettsiac... [more]
UPI0019152CE61.320e-5557.67alpha/beta fold hydrolase n=1 Tax=Dictyobacter for... [more]
A0A6L7TN93_9CHLR9.440e-5557.93Alpha/beta fold hydrolase n=1 Tax=Chloroflexi bact... [more]
UPI001F3038EC1.370e-5455.21alpha/beta fold hydrolase n=1 Tax=Spiractinospora ... [more]
A0A0H2M753_VARPD2.600e-5457.67Homoserine O-acetyltransferase n=24 Tax=Variovorax... [more]
A0A3P3E852_9BURK2.600e-5457.67Alpha/beta fold hydrolase n=2 Tax=Variovorax beiji... [more]
A0A7I8ELE9_9CHLR1.210e-5356.44Homoserine O-acetyltransferase n=1 Tax=Ktedonobact... [more]
A0A191ZFY1_9GAMM1.500e-5358.54AB hydrolase-1 domain-containing protein n=4 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114451contigM-pyrifera_M_contig114451:2..490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score184.9
Seed ortholog evalue3e-44
Seed eggNOG ortholog1168067.JAGP01000001_gene1677
Preferred namemetXA
KEGG rclassRC00004,RC00041
KEGG koko:K00641
KEGG ReactionR01776
KEGG Pathwayko00270,ko01100,ko01130,map00270,map01100,map01130
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine
EggNOG OGs1MVJV@1224,1RQ2N@1236,COG2021@1,COG2021@2
EC2.3.1.31
COG Functional cat.E
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size489
Cds size489
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.8589077-CDS-M-pyrifera_M_contig114451:1..4901622815660.8589077-CDS-M-pyrifera_M_contig114451:1..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114451 2..490 +
1692277509.7344062-CDS-M-pyrifera_M_contig114451:1..4901692277509.7344062-CDS-M-pyrifera_M_contig114451:1..490Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114451 2..490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114451.3012.1prot_M-pyrifera_M_contig114451.3012.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114451 2..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114451.3012.1

>prot_M-pyrifera_M_contig114451.3012.1 ID=prot_M-pyrifera_M_contig114451.3012.1|Name=mRNA_M-pyrifera_M_contig114451.3012.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
LQTDAAFNEGWYDQPPLKGLLAFGRVYASWFFSQDFFREGLYRDIGLASI
EDVVRLTQRYFLQSDANDLLAMADTWRSGDISANPEFNGDLAAALRAITA
RAIVLPGATDLYFRVADNALELAQMPNAELRPIPSSWGHTAGFGIHPPDN
GFIDQALEELLT*
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mRNA from alignment at M-pyrifera_M_contig114451:2..490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114451.3012.1 ID=mRNA_M-pyrifera_M_contig114451.3012.1|Name=mRNA_M-pyrifera_M_contig114451.3012.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig114451:2..490+ (Macrocystis pyrifera P11B4 male)
CTGCAGACCGACGCGGCGTTTAATGAAGGCTGGTACGACCAGCCTCCGCT
GAAAGGCTTGCTGGCGTTTGGTCGGGTGTATGCAAGCTGGTTCTTTTCGC
AGGATTTTTTCCGCGAGGGACTGTATCGGGACATCGGGCTGGCATCGATC
GAGGATGTCGTCCGCCTGACCCAACGCTATTTTTTGCAAAGTGATGCCAA
CGACTTGCTCGCGATGGCGGACACCTGGCGCAGTGGTGACATCAGCGCGA
ACCCGGAATTCAACGGCGATCTCGCCGCCGCGCTTCGTGCGATTACCGCG
CGCGCGATCGTACTGCCGGGCGCAACGGATCTCTATTTTCGCGTGGCGGA
CAATGCGCTCGAGCTTGCGCAGATGCCGAACGCCGAACTACGGCCAATCC
CGTCGTCCTGGGGACATACCGCGGGATTCGGGATCCACCCGCCGGATAAT
GGATTCATCGACCAGGCACTGGAGGAATTACTGACATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114451:2..490+

>mRNA_M-pyrifera_M_contig114451.3012.1 ID=mRNA_M-pyrifera_M_contig114451.3012.1|Name=mRNA_M-pyrifera_M_contig114451.3012.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig114451:2..490+ (Macrocystis pyrifera P11B4 male)
CTGCAGACCGACGCGGCGTTTAATGAAGGCTGGTACGACCAGCCTCCGCT
GAAAGGCTTGCTGGCGTTTGGTCGGGTGTATGCAAGCTGGTTCTTTTCGC
AGGATTTTTTCCGCGAGGGACTGTATCGGGACATCGGGCTGGCATCGATC
GAGGATGTCGTCCGCCTGACCCAACGCTATTTTTTGCAAAGTGATGCCAA
CGACTTGCTCGCGATGGCGGACACCTGGCGCAGTGGTGACATCAGCGCGA
ACCCGGAATTCAACGGCGATCTCGCCGCCGCGCTTCGTGCGATTACCGCG
CGCGCGATCGTACTGCCGGGCGCAACGGATCTCTATTTTCGCGTGGCGGA
CAATGCGCTCGAGCTTGCGCAGATGCCGAACGCCGAACTACGGCCAATCC
CGTCGTCCTGGGGACATACCGCGGGATTCGGGATCCACCCGCCGGATAAT
GGATTCATCGACCAGGCACTGGAGGAATTACTGACATGACTGCAGACCGA
CGCGGCGTTTAATGAAGGCTGGTACGACCAGCCTCCGCTGAAAGGCTTGC
TGGCGTTTGGTCGGGTGTATGCAAGCTGGTTCTTTTCGCAGGATTTTTTC
CGCGAGGGACTGTATCGGGACATCGGGCTGGCATCGATCGAGGATGTCGT
CCGCCTGACCCAACGCTATTTTTTGCAAAGTGATGCCAACGACTTGCTCG
CGATGGCGGACACCTGGCGCAGTGGTGACATCAGCGCGAACCCGGAATTC
AACGGCGATCTCGCCGCCGCGCTTCGTGCGATTACCGCGCGCGCGATCGT
ACTGCCGGGCGCAACGGATCTCTATTTTCGCGTGGCGGACAATGCGCTCG
AGCTTGCGCAGATGCCGAACGCCGAACTACGGCCAATCCCGTCGTCCTGG
GGACATACCGCGGGATTCGGGATCCACCCGCCGGATAATGGATTCATCGA
CCAGGCACTGGAGGAATTACTGACATGA
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