mRNA_M-pyrifera_M_contig114428.3006.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114428.3006.1
Unique NamemRNA_M-pyrifera_M_contig114428.3006.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114428.3006.1 vs. uniprot
Match: A0A7W1S663_9CHLR (Uncharacterized protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7W1S663_9CHLR)

HSP 1 Score: 81.6 bits (200), Expect = 1.450e-15
Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:   10 LYLHNDPSPPAGDTPTQVDLPFTRTVPTGTTLYNYSNNYDAGPGRLLQQTTNELAESDHRSFQQWVY-PISSASSASATSDLTIWVAPQGFTPNK 291
            LYLHN+PSPP+GDT +Q  LPF  T PTG TL+NY  + DA PG ++Q+  +   E++   +Q+WV  P   +++ S    L  W A + FT  K
Sbjct:  405 LYLHNNPSPPSGDTTSQTTLPFNLTAPTGGTLFNYDTDRDAFPGLVIQKGGSGFGETNPSKYQKWVSSPFHPSTNISGAPQLVFWSAIKDFTVGK 499
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BLAST of mRNA_M-pyrifera_M_contig114428.3006.1 vs. uniprot
Match: A0A7C3BH20_9CHLR (Uncharacterized protein n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A7C3BH20_9CHLR)

HSP 1 Score: 67.0 bits (162), Expect = 1.470e-10
Identity = 37/118 (31.36%), Postives = 61/118 (51.69%), Query Frame = 1 
Query:   13 YLHNDPSPPAGDTPTQVDLPFTRTVPTGTTLYNYSNNYDAGPGRLLQQTTNELAESDHRSFQQW-VYPISSASSASATSDLTIWVAPQGFTPNKTVGLIVGLYDCDATLATCSLLATS 363
            YLHN+P+PP GDT  Q +LP     PT   LYNY  N+D+ PGR ++++       + + +  W   P +S +     + + ++VAP GF  +      + L D D    T + +A++
Sbjct:  164 YLHNNPTPPTGDTDAQPNLPMDDAQPTAEDLYNYDQNFDSSPGRRVEESRGGPDGLELKEYVNWQTAPYTSDTHFQGAAVVNLYVAPDGFNYDNEGEFTIYLRDYDPASGTYTEIASA 281
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BLAST of mRNA_M-pyrifera_M_contig114428.3006.1 vs. uniprot
Match: A0A3M1EK02_9CHLR (Peptidase_S8 domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1EK02_9CHLR)

HSP 1 Score: 60.1 bits (144), Expect = 5.210e-8
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:   13 YLHNDPSPPAGDTPTQVDLPFTRTVPTGTTLYNYSNNYDAGPGRLLQQTTNELAESDHRSFQQW 204
            YLHNDPSPPAGDT +   LP  +TVP   TLYNY  + D   G L+++  +   E+D    Q+W
Sbjct:  129 YLHNDPSPPAGDTTSHAVLPLDQTVPDIKTLYNYDVDRDTDAGLLIRRGGSGPFETDSTKVQRW 192
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BLAST of mRNA_M-pyrifera_M_contig114428.3006.1 vs. uniprot
Match: A0A2N0KKB7_9CHLR (Uncharacterized protein n=1 Tax=SAR202 cluster bacterium Casp-Chloro-G2 TaxID=1926604 RepID=A0A2N0KKB7_9CHLR)

HSP 1 Score: 58.9 bits (141), Expect = 1.280e-7
Identity = 41/109 (37.61%), Postives = 51/109 (46.79%), Query Frame = 1 
Query:    4 TVLYLHNDPSPPAGDTPTQVDLPFTRTVPTGTTLYNYS--NNYDAGPGRLLQQTTNELAESDHRSFQQW-VYPISSASSASATSDLTIWVAPQGFTPNKTVGLIVGLYD 321
            T  YLHNDPSPPAGDT  Q  LP   T  +G+ LY Y   NN    PG LL+ T   LAE     FQ W   P+           + IW   + F   ++  + + L D
Sbjct:  367 TSYYLHNDPSPPAGDTSRQAVLPLDETGSSGSVLYRYGVPNN---NPGLLLKGTDLGLAEVTADKFQVWQTGPLGEDLGIEGDVMVDIWAGVRNFQAEQSGAMTIYLRD 472
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BLAST of mRNA_M-pyrifera_M_contig114428.3006.1 vs. uniprot
Match: A0A536NIY0_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536NIY0_9CHLR)

HSP 1 Score: 56.6 bits (135), Expect = 4.140e-7
Identity = 34/91 (37.36%), Postives = 46/91 (50.55%), Query Frame = 1 
Query:    7 VLYLHNDPSPPAGDTPTQVDLPFTRTVPTGTTLYNYSNNYDAGPGRLLQQTTNELAESDHRSFQQW-VYPISSASSASATSDLTIWVAPQG 276
            VLYLHN P+PP G+T  Q  L    TVPT   L NY  + DA  GRL+ + T   +E+    +  W      +A + + T  L I+ A  G
Sbjct:   45 VLYLHNRPTPPVGNTTAQFALAMDTTVPTAALLNNYDTDCDAVAGRLITRNTGLSSEATVCRYANWQTAAYGTARALNGTMTLRIYAAKSG 135
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114428.3006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7W1S663_9CHLR1.450e-1543.16Uncharacterized protein n=1 Tax=Anaerolineae bacte... [more]
A0A7C3BH20_9CHLR1.470e-1031.36Uncharacterized protein n=1 Tax=Dehalococcoidia ba... [more]
A0A3M1EK02_9CHLR5.210e-846.88Peptidase_S8 domain-containing protein n=1 Tax=Chl... [more]
A0A2N0KKB7_9CHLR1.280e-737.61Uncharacterized protein n=1 Tax=SAR202 cluster bac... [more]
A0A536NIY0_9CHLR4.140e-737.36Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114428contigM-pyrifera_M_contig114428:50..424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.618547-CDS-M-pyrifera_M_contig114428:49..4241622815660.618547-CDS-M-pyrifera_M_contig114428:49..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114428 50..424 -
1692277509.6449957-CDS-M-pyrifera_M_contig114428:49..4241692277509.6449957-CDS-M-pyrifera_M_contig114428:49..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114428 50..424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114428.3006.1prot_M-pyrifera_M_contig114428.3006.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114428 50..424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114428.3006.1

>prot_M-pyrifera_M_contig114428.3006.1 ID=prot_M-pyrifera_M_contig114428.3006.1|Name=mRNA_M-pyrifera_M_contig114428.3006.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
PTVLYLHNDPSPPAGDTPTQVDLPFTRTVPTGTTLYNYSNNYDAGPGRLL
QQTTNELAESDHRSFQQWVYPISSASSASATSDLTIWVAPQGFTPNKTVG
LIVGLYDCDATLATCSLLATSETTT
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mRNA from alignment at M-pyrifera_M_contig114428:50..424-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114428.3006.1 ID=mRNA_M-pyrifera_M_contig114428.3006.1|Name=mRNA_M-pyrifera_M_contig114428.3006.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig114428:50..424- (Macrocystis pyrifera P11B4 male)
CCCACGGTGCTGTATCTGCACAACGACCCGTCACCCCCAGCAGGCGACAC
ACCGACCCAGGTCGACCTGCCGTTCACCCGTACGGTGCCGACCGGCACGA
CGCTCTACAACTACAGCAACAACTACGACGCCGGTCCAGGCCGGTTGCTG
CAGCAGACCACCAACGAACTGGCAGAGTCCGATCACCGCAGCTTCCAACA
GTGGGTGTATCCGATCTCGTCAGCCTCGTCGGCATCGGCCACCTCAGACC
TCACGATCTGGGTGGCTCCCCAGGGCTTCACCCCGAACAAGACCGTCGGC
CTGATCGTCGGCTTGTACGACTGCGATGCAACGCTCGCGACGTGCTCGCT
CCTGGCAACATCGGAGACGACCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114428:50..424-

>mRNA_M-pyrifera_M_contig114428.3006.1 ID=mRNA_M-pyrifera_M_contig114428.3006.1|Name=mRNA_M-pyrifera_M_contig114428.3006.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig114428:50..424- (Macrocystis pyrifera P11B4 male)
CCCACGGTGCTGTATCTGCACAACGACCCGTCACCCCCAGCAGGCGACAC
ACCGACCCAGGTCGACCTGCCGTTCACCCGTACGGTGCCGACCGGCACGA
CGCTCTACAACTACAGCAACAACTACGACGCCGGTCCAGGCCGGTTGCTG
CAGCAGACCACCAACGAACTGGCAGAGTCCGATCACCGCAGCTTCCAACA
GTGGGTGTATCCGATCTCGTCAGCCTCGTCGGCATCGGCCACCTCAGACC
TCACGATCTGGGTGGCTCCCCAGGGCTTCACCCCGAACAAGACCGTCGGC
CTGATCGTCGGCTTGTACGACTGCGATGCAACGCTCGCGACGTGCTCGCT
CCTGGCAACATCGGAGACGACCACCCCCACGGTGCTGTATCTGCACAACG
ACCCGTCACCCCCAGCAGGCGACACACCGACCCAGGTCGACCTGCCGTTC
ACCCGTACGGTGCCGACCGGCACGACGCTCTACAACTACAGCAACAACTA
CGACGCCGGTCCAGGCCGGTTGCTGCAGCAGACCACCAACGAACTGGCAG
AGTCCGATCACCGCAGCTTCCAACAGTGGGTGTATCCGATCTCGTCAGCC
TCGTCGGCATCGGCCACCTCAGACCTCACGATCTGGGTGGCTCCCCAGGG
CTTCACCCCGAACAAGACCGTCGGCCTGATCGTCGGCTTGTACGACTGCG
ATGCAACGCTCGCGACGTGCTCGCTCCTGGCAACATCGGAGACGACCACC
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