mRNA_M-pyrifera_M_contig114366.3003.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114366.3003.1
Unique NamemRNA_M-pyrifera_M_contig114366.3003.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114366.3003.1 vs. uniprot
Match: A0A0W0YVS3_9GAMM (Uncharacterized protein n=1 Tax=Legionella shakespearei DSM 23087 TaxID=1122169 RepID=A0A0W0YVS3_9GAMM)

HSP 1 Score: 48.5 bits (114), Expect = 9.530e-6
Identity = 31/62 (50.00%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:    1 ADLQSAPFNHSGNSP--ILTSLSANRITSYLLCTPAQR----RGSNPRPADYKSAALPTELR 168
            +DLQS PF+ SG  P   L S     ++ YLL  P  R    + SNP P DYKS ALPTELR
Sbjct:   42 SDLQSDPFDRSGTPPKRTLFSFKIKGMSIYLLTFPLLRWCWHQESNPGPTDYKSVALPTELR 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114366.3003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0W0YVS3_9GAMM9.530e-650.00Uncharacterized protein n=1 Tax=Legionella shakesp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114366contigM-pyrifera_M_contig114366:238..450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.3991997-CDS-M-pyrifera_M_contig114366:237..3041622815660.3991997-CDS-M-pyrifera_M_contig114366:237..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114366 238..304 -
1692277509.533203-CDS-M-pyrifera_M_contig114366:237..3041692277509.533203-CDS-M-pyrifera_M_contig114366:237..304Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114366 238..304 -
1622815660.418526-CDS-M-pyrifera_M_contig114366:349..4501622815660.418526-CDS-M-pyrifera_M_contig114366:349..450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114366 350..450 -
1692277509.5485013-CDS-M-pyrifera_M_contig114366:349..4501692277509.5485013-CDS-M-pyrifera_M_contig114366:349..450Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114366 350..450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114366.3003.1prot_M-pyrifera_M_contig114366.3003.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114366 238..450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114366.3003.1

>prot_M-pyrifera_M_contig114366.3003.1 ID=prot_M-pyrifera_M_contig114366.3003.1|Name=mRNA_M-pyrifera_M_contig114366.3003.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=56bp
ADLQSAPFNHSGNSPILTSLSANRITSYLLCTPAQRRGSNPRPADYKSAA
LPTELR
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mRNA from alignment at M-pyrifera_M_contig114366:238..450-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114366.3003.1 ID=mRNA_M-pyrifera_M_contig114366.3003.1|Name=mRNA_M-pyrifera_M_contig114366.3003.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig114366:238..450- (Macrocystis pyrifera P11B4 male)
GCGGATTTACAGTCCGCCCCCTTTAACCACTCGGGCAACTCCCCGATTTT
GACCAGCCTCTCAGCTAATCGAATCACTTCGTACCTTCTCTGCACGCCAG
CGTCAACTCGACTTGACGCGTTCTAGCGTTTATCCAGCTGACAGAGCCAG
CGGAGGGGTTCGAACCCACGACCTGCTGATTACAAATCAGCTGCTCTCCC
AACTGAGCTACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114366:238..450-

>mRNA_M-pyrifera_M_contig114366.3003.1 ID=mRNA_M-pyrifera_M_contig114366.3003.1|Name=mRNA_M-pyrifera_M_contig114366.3003.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig114366:238..450- (Macrocystis pyrifera P11B4 male)
GCGGATTTACAGTCCGCCCCCTTTAACCACTCGGGCAACTCCCCGATTTT
GACCAGCCTCTCAGCTAATCGAATCACTTCGTACCTTCTCTGCACGCCAG
CGCGGATTTACAGTCCGCCCCCTTTAACCACTCGGGCAACTCCCCGATTT
TGACCAGCCTCTCAGCTAATCGAATCACTTCGTACCTTCTCTGCACGCCA
GCCCAGCGGAGGGGTTCGAACCCACGACCTGCTGATTACAAATCAGCTGC
TCTCCCAACTGAGCTACGCCCAGCGGAGGGGTTCGAACCCACGACCTGCT
GATTACAAATCAGCTGCTCTCCCAACTGAGCTACGC
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