mRNA_M-pyrifera_M_contig114363.3001.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114363.3001.1
Unique NamemRNA_M-pyrifera_M_contig114363.3001.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114363.3001.1 vs. uniprot
Match: A0A657B975_9GAMM (Uncharacterized protein n=1 Tax=Oleiphilus sp. HI0079 TaxID=1822254 RepID=A0A657B975_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 1.400e-5
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:  145 ITRESINEEMDVLKTEVSALRSLQSQIK---------ENKKAIAAIDSSRKQVNERLVRLSEQLNQLQLQAKPGS 342
            +TRE+I E +D L T +S L     +I          EN KAIA+ID+SR+Q+NER+V L  +LN+L+L+   GS
Sbjct:  135 LTREAIEESVDDLATRISELSDRLGRIAKSDAGKQAVENAKAIASIDASRRQINERIVGLDRRLNELKLEVSAGS 209
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BLAST of mRNA_M-pyrifera_M_contig114363.3001.1 vs. uniprot
Match: UPI0007C2A6CB (hypothetical protein n=3 Tax=unclassified Oleiphilus TaxID=2631174 RepID=UPI0007C2A6CB)

HSP 1 Score: 52.0 bits (123), Expect = 2.080e-5
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:  145 ITRESINEEMDVLKTEVSALRSLQSQIK---------ENKKAIAAIDSSRKQVNERLVRLSEQLNQLQLQAKPGS 342
            +TRE+I E +D L T +S L     +I          EN KAIA+ID+SR+Q+NER+V L  +LN+L+L+   GS
Sbjct:  210 LTREAIEESVDDLATRISELSDRLGRIAKSDAGKQAVENAKAIASIDASRRQINERIVGLDRRLNELKLEVSAGS 284
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114363.3001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A657B975_9GAMM1.400e-544.00Uncharacterized protein n=1 Tax=Oleiphilus sp. HI0... [more]
UPI0007C2A6CB2.080e-544.00hypothetical protein n=3 Tax=unclassified Oleiphil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114363contigM-pyrifera_M_contig114363:191..535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size345
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.3171961-CDS-M-pyrifera_M_contig114363:190..5351622815660.3171961-CDS-M-pyrifera_M_contig114363:190..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114363 191..535 -
1692277509.5140495-CDS-M-pyrifera_M_contig114363:190..5351692277509.5140495-CDS-M-pyrifera_M_contig114363:190..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114363 191..535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114363.3001.1prot_M-pyrifera_M_contig114363.3001.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114363 191..535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114363.3001.1

>prot_M-pyrifera_M_contig114363.3001.1 ID=prot_M-pyrifera_M_contig114363.3001.1|Name=mRNA_M-pyrifera_M_contig114363.3001.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
LQGKIAGQGKQLAKAEKSLDAFESSFQRVEASLRSLETKMSLVSGEMAIT
RESINEEMDVLKTEVSALRSLQSQIKENKKAIAAIDSSRKQVNERLVRLS
EQLNQLQLQAKPGS*
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mRNA from alignment at M-pyrifera_M_contig114363:191..535-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114363.3001.1 ID=mRNA_M-pyrifera_M_contig114363.3001.1|Name=mRNA_M-pyrifera_M_contig114363.3001.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig114363:191..535- (Macrocystis pyrifera P11B4 male)
TTACAGGGGAAAATAGCCGGGCAGGGCAAGCAATTGGCCAAAGCGGAGAA
GAGTTTAGACGCCTTTGAATCATCATTTCAGCGTGTTGAGGCCTCACTTC
GTTCGTTGGAAACAAAGATGTCTTTGGTTTCTGGAGAAATGGCGATTACG
CGTGAGTCAATTAATGAAGAGATGGATGTATTAAAAACGGAGGTTTCTGC
TTTGCGTTCATTGCAATCGCAAATCAAAGAGAACAAAAAAGCAATTGCAG
CAATTGATTCTAGTCGCAAACAGGTGAATGAACGCTTGGTTAGGCTTTCA
GAGCAGCTAAATCAGTTGCAGCTGCAGGCCAAACCTGGGTCATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114363:191..535-

>mRNA_M-pyrifera_M_contig114363.3001.1 ID=mRNA_M-pyrifera_M_contig114363.3001.1|Name=mRNA_M-pyrifera_M_contig114363.3001.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig114363:191..535- (Macrocystis pyrifera P11B4 male)
TTACAGGGGAAAATAGCCGGGCAGGGCAAGCAATTGGCCAAAGCGGAGAA
GAGTTTAGACGCCTTTGAATCATCATTTCAGCGTGTTGAGGCCTCACTTC
GTTCGTTGGAAACAAAGATGTCTTTGGTTTCTGGAGAAATGGCGATTACG
CGTGAGTCAATTAATGAAGAGATGGATGTATTAAAAACGGAGGTTTCTGC
TTTGCGTTCATTGCAATCGCAAATCAAAGAGAACAAAAAAGCAATTGCAG
CAATTGATTCTAGTCGCAAACAGGTGAATGAACGCTTGGTTAGGCTTTCA
GAGCAGCTAAATCAGTTGCAGCTGCAGGCCAAACCTGGGTCATAATTACA
GGGGAAAATAGCCGGGCAGGGCAAGCAATTGGCCAAAGCGGAGAAGAGTT
TAGACGCCTTTGAATCATCATTTCAGCGTGTTGAGGCCTCACTTCGTTCG
TTGGAAACAAAGATGTCTTTGGTTTCTGGAGAAATGGCGATTACGCGTGA
GTCAATTAATGAAGAGATGGATGTATTAAAAACGGAGGTTTCTGCTTTGC
GTTCATTGCAATCGCAAATCAAAGAGAACAAAAAAGCAATTGCAGCAATT
GATTCTAGTCGCAAACAGGTGAATGAACGCTTGGTTAGGCTTTCAGAGCA
GCTAAATCAGTTGCAGCTGCAGGCCAAACCTGGGTCATAA
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