mRNA_M-pyrifera_M_contig114357.2999.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114357.2999.1
Unique NamemRNA_M-pyrifera_M_contig114357.2999.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114357.2999.1 vs. uniprot
Match: UPI001E4C9981 (hypothetical protein n=1 Tax=Desulfonatronum sp. SC1 TaxID=2109626 RepID=UPI001E4C9981)

HSP 1 Score: 144 bits (364), Expect = 5.020e-42
Identity = 70/102 (68.63%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    1 HNSATGWGANPQRAGTPGGGNGGAIANDGNTYTLTLIDTVVTDNVANEGGGGVFYVSNNRTGHLVITDSTLLRNDSRGFETAGYPGIFYLGSGPPNVSGSTL 306
            HNSA G+GANPQR GTPGGG+GGAI NDGN + L +  T + DN A EGGG +FYVSNNR+GHL+I DS L+RN S GFET GYPGIFYLG GPP V  ST+
Sbjct:   73 HNSAVGFGANPQRPGTPGGGSGGAIYNDGNRFDLNICGTRIEDNHAREGGGAIFYVSNNRSGHLIIKDSILVRNPSDGFETHGYPGIFYLGDGPPQVHNSTI 174
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BLAST of mRNA_M-pyrifera_M_contig114357.2999.1 vs. uniprot
Match: A0A0W8G5J8_9ZZZZ (Putative lipoprotein n=1 Tax=hydrocarbon metagenome TaxID=938273 RepID=A0A0W8G5J8_9ZZZZ)

HSP 1 Score: 137 bits (346), Expect = 4.330e-40
Identity = 69/102 (67.65%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:    1 HNSATGWGANPQRAGTPGGGNGGAIANDGNTYTLTLIDTVVTDNVANEGGGGVFYVSNNRTGHLVITDSTLLRNDSRGFETAGYPGIFYLGSGPPNVSGSTL 306
            HN A G+GANP R GTPGGG+GGAI NDGNT+TL L  T + DN A EGGG +F+VSN+RTG L I DS L +N S GFETAGYPGIFYLGSGPP V  S +
Sbjct:   12 HNRAVGYGANPARPGTPGGGSGGAIYNDGNTFTLNLCGTRIEDNAAREGGGAIFFVSNDRTGTLRIEDSVLRKNPSDGFETAGYPGIFYLGSGPPVVVNSVI 113
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BLAST of mRNA_M-pyrifera_M_contig114357.2999.1 vs. uniprot
Match: A0A4Y6PRE7_9DELT (Uncharacterized protein n=1 Tax=Persicimonas caeni TaxID=2292766 RepID=A0A4Y6PRE7_9DELT)

HSP 1 Score: 140 bits (353), Expect = 3.730e-38
Identity = 70/102 (68.63%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:    1 HNSATGWGANPQRAGTPGGGNGGAIANDGNTYTLTLIDTVVTDNVANEGGGGVFYVSNNRTGHLVITDSTLLRNDSRGFETAGYPGIFYLGSGPPNVSGSTL 306
            HN A G GANP + GTPGGG+GGAI NDGNTYTLT+  T + DN ANEGGG +F+VSN+R+GHLVI DSTL  N S GFET GYPGIFYLG G P VS S +
Sbjct:  279 HNDAIGRGANPAQEGTPGGGSGGAIYNDGNTYTLTVCGTRIVDNHANEGGGAIFFVSNDRSGHLVIEDSTLQNNPSDGFETQGYPGIFYLGDGDPQVSESVI 380
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BLAST of mRNA_M-pyrifera_M_contig114357.2999.1 vs. uniprot
Match: A0A840BQA9_9RHOO (Uncharacterized protein n=1 Tax=Niveibacterium umoris TaxID=1193620 RepID=A0A840BQA9_9RHOO)

HSP 1 Score: 139 bits (349), Expect = 1.570e-37
Identity = 70/102 (68.63%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:    1 HNSATGWGANPQRAGTPGGGNGGAIANDGNTYTLTLIDTVVTDNVANEGGGGVFYVSNNRTGHLVITDSTLLRNDSRGFETAGYPGIFYLGSGPPNVSGSTL 306
            HNSA G GANP R+GTPGGG+GGAI NDGNT+ L +  + + +N A EGGG +F+VSN+RTG L ITDS L +N S GFETAGYPGIFYLGSG P VSGSTL
Sbjct:  282 HNSAIGNGANPARSGTPGGGSGGAIYNDGNTFDLKVCGSRIANNTAKEGGGAIFFVSNDRTGTLSITDSVLSQNPSAGFETAGYPGIFYLGSGAPKVSGSTL 383
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BLAST of mRNA_M-pyrifera_M_contig114357.2999.1 vs. uniprot
Match: UPI001C12FB06 (hypothetical protein n=2 Tax=Niveibacterium TaxID=1769726 RepID=UPI001C12FB06)

HSP 1 Score: 138 bits (347), Expect = 2.760e-37
Identity = 70/102 (68.63%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:    1 HNSATGWGANPQRAGTPGGGNGGAIANDGNTYTLTLIDTVVTDNVANEGGGGVFYVSNNRTGHLVITDSTLLRNDSRGFETAGYPGIFYLGSGPPNVSGSTL 306
            HNSA G GANP R+GTPGGG+GGAI NDGNT+ L L  T + +N A EGGG +F+VSN+RTG L ITDS L  N S GFETAGYPGIFYLG G P +SGSTL
Sbjct:  276 HNSAIGNGANPARSGTPGGGSGGAIYNDGNTFDLKLCGTRIANNSAKEGGGAIFFVSNDRTGTLSITDSVLSANPSAGFETAGYPGIFYLGEGAPKISGSTL 377
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BLAST of mRNA_M-pyrifera_M_contig114357.2999.1 vs. uniprot
Match: A0A7K3NJA6_9DELT (Uncharacterized protein n=2 Tax=Desulfovibrio sulfodismutans TaxID=63561 RepID=A0A7K3NJA6_9DELT)

HSP 1 Score: 135 bits (340), Expect = 5.680e-37
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:    1 HNSATGWGANPQRAGTPGGGNGGAIANDGNTYTLTLIDTVVTDNVANEGGGGVFYVSNNRTGHLVITDSTLLRNDSRGFETAGYPGIFYLGSGPPNVSGSTL 306
            HN A G+GANP R GTPGGG+GGAI NDGNT+TL L  T + DN A EGGG +F+VSN+ TG L I DS L +N S GFETAGYPGIFYLGSGPP V  S +
Sbjct:  197 HNRAVGYGANPARPGTPGGGSGGAIYNDGNTFTLDLCGTRIEDNAAREGGGAIFFVSNDLTGTLRIEDSVLRKNPSEGFETAGYPGIFYLGSGPPVVVNSVI 298
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BLAST of mRNA_M-pyrifera_M_contig114357.2999.1 vs. uniprot
Match: UPI000424825E (hypothetical protein n=1 Tax=Desulfogranum japonicum TaxID=231447 RepID=UPI000424825E)

HSP 1 Score: 135 bits (340), Expect = 2.420e-36
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 1 
Query:    1 HNSATGWGANPQRAGTPGGGNGGAIANDGNTYTLTLIDTVVTDNVANEGGGGVFYVSNNRTGHLVITDSTLLRNDSRGFETAGYPGIFYLGSGPPNVSGSTL 306
            +N A G+GANP ++GTPGGG+GGAI NDGNT+TL+L  T +  N A EGGG +F+VSN+R+GHLVI  STL +N S GFET GYPGIFYLGSG P V+ S +
Sbjct:  266 YNKAIGYGANPAQSGTPGGGSGGAIYNDGNTFTLSLCGTTIEQNTAKEGGGAIFFVSNDRSGHLVINKSTLRQNTSEGFETKGYPGIFYLGSGNPQVTDSVI 367
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BLAST of mRNA_M-pyrifera_M_contig114357.2999.1 vs. uniprot
Match: A0A7Y3FJ57_9DELT (Uncharacterized protein n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A7Y3FJ57_9DELT)

HSP 1 Score: 134 bits (336), Expect = 2.580e-36
Identity = 67/102 (65.69%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:    1 HNSATGWGANPQRAGTPGGGNGGAIANDGNTYTLTLIDTVVTDNVANEGGGGVFYVSNNRTGHLVITDSTLLRNDSRGFETAGYPGIFYLGSGPPNVSGSTL 306
            HN+A G GANPQRAGTPGGG+GGAI NDGNT+TLT+  TV+ +N ANEGGG +F+VSN+R+G LVI DS L  N S GFET GYPGIF L +G P V  S +
Sbjct:  203 HNAAIGNGANPQRAGTPGGGSGGAIYNDGNTFTLTVCGTVMENNTANEGGGAIFFVSNDRSGSLVIEDSVLRNNPSDGFETQGYPGIFVLANGDPQVRSSVI 304
[Close]
BLAST of mRNA_M-pyrifera_M_contig114357.2999.1 vs. uniprot
Match: A0A354EHT5_9DELT (Uncharacterized protein n=1 Tax=Desulfobulbaceae bacterium TaxID=2053307 RepID=A0A354EHT5_9DELT)

HSP 1 Score: 133 bits (334), Expect = 4.680e-36
Identity = 69/102 (67.65%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:    1 HNSATGWGANPQRAGTPGGGNGGAIANDGNTYTLTLIDTVVTDNVANEGGGGVFYVSNNRTGHLVITDSTLLRNDSRGFETAGYPGIFYLGSGPPNVSGSTL 306
            HN A G GANP R GTPGGG+GGAI NDGNT+TL L  T +  N ANEGGG VF+VSN+R+G L+I DS L RN S GFETAGYPGIFYLGSG P V  S +
Sbjct:  199 HNRAVGSGANPARPGTPGGGSGGAIYNDGNTFTLELCGTRMEQNHANEGGGAVFFVSNDRSGTLIIRDSLLSRNPSDGFETAGYPGIFYLGSGDPQVFNSII 300
[Close]
BLAST of mRNA_M-pyrifera_M_contig114357.2999.1 vs. uniprot
Match: UPI00040F4E8C (hypothetical protein n=1 Tax=Actinospica robiniae TaxID=304901 RepID=UPI00040F4E8C)

HSP 1 Score: 135 bits (340), Expect = 5.200e-36
Identity = 67/102 (65.69%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:    1 HNSATGWGANPQRAGTPGGGNGGAIANDGNTYTLTLIDTVVTDNVANEGGGGVFYVSNNRTGHLVITDSTLLRNDSRGFETAGYPGIFYLGSGPPNVSGSTL 306
            +N A G GANP R+GTPGGG+GGAI NDGNTYTLT+ D+V+  N ANEGGG VFYVSN+R+G + +  STL  N S+GF TAGYPG+F+LG G P VSGS+L
Sbjct:  309 YNEAIGVGANPARSGTPGGGSGGAIYNDGNTYTLTITDSVIEHNQANEGGGAVFYVSNDRSGTMTVNGSTLHSNVSKGFYTAGYPGVFFLGQGKPVVSGSSL 410
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114357.2999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E4C99815.020e-4268.63hypothetical protein n=1 Tax=Desulfonatronum sp. S... [more]
A0A0W8G5J8_9ZZZZ4.330e-4067.65Putative lipoprotein n=1 Tax=hydrocarbon metagenom... [more]
A0A4Y6PRE7_9DELT3.730e-3868.63Uncharacterized protein n=1 Tax=Persicimonas caeni... [more]
A0A840BQA9_9RHOO1.570e-3768.63Uncharacterized protein n=1 Tax=Niveibacterium umo... [more]
UPI001C12FB062.760e-3768.63hypothetical protein n=2 Tax=Niveibacterium TaxID=... [more]
A0A7K3NJA6_9DELT5.680e-3766.67Uncharacterized protein n=2 Tax=Desulfovibrio sulf... [more]
UPI000424825E2.420e-3663.73hypothetical protein n=1 Tax=Desulfogranum japonic... [more]
A0A7Y3FJ57_9DELT2.580e-3665.69Uncharacterized protein n=2 Tax=Deltaproteobacteri... [more]
A0A354EHT5_9DELT4.680e-3667.65Uncharacterized protein n=1 Tax=Desulfobulbaceae b... [more]
UPI00040F4E8C5.200e-3665.69hypothetical protein n=1 Tax=Actinospica robiniae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114357contigM-pyrifera_M_contig114357:261..572 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score136.0
Seed ortholog evalue1e-29
Seed eggNOG ortholog1121403.AUCV01000006_gene428
Hectar predicted targeting categoryother localisation
EggNOG OGs1QXU4@1224,2DBF7@1,2WTQD@28221,2Z8X0@2,42YFE@68525
Best tax levelDeltaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.2281663-CDS-M-pyrifera_M_contig114357:260..5721622815660.2281663-CDS-M-pyrifera_M_contig114357:260..572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114357 261..572 -
1692277509.4829102-CDS-M-pyrifera_M_contig114357:260..5721692277509.4829102-CDS-M-pyrifera_M_contig114357:260..572Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114357 261..572 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114357.2999.1prot_M-pyrifera_M_contig114357.2999.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114357 261..572 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114357.2999.1

>prot_M-pyrifera_M_contig114357.2999.1 ID=prot_M-pyrifera_M_contig114357.2999.1|Name=mRNA_M-pyrifera_M_contig114357.2999.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
HNSATGWGANPQRAGTPGGGNGGAIANDGNTYTLTLIDTVVTDNVANEGG
GGVFYVSNNRTGHLVITDSTLLRNDSRGFETAGYPGIFYLGSGPPNVSGS
TLG*
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mRNA from alignment at M-pyrifera_M_contig114357:261..572-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114357.2999.1 ID=mRNA_M-pyrifera_M_contig114357.2999.1|Name=mRNA_M-pyrifera_M_contig114357.2999.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig114357:261..572- (Macrocystis pyrifera P11B4 male)
CACAACTCGGCCACCGGGTGGGGCGCCAACCCGCAGCGAGCGGGGACCCC
GGGCGGCGGCAACGGTGGTGCGATCGCCAACGACGGCAACACCTACACGC
TCACCCTGATCGACACGGTGGTCACCGACAATGTCGCCAACGAGGGCGGC
GGCGGTGTGTTCTACGTGAGCAACAACCGCACCGGACATCTCGTCATCAC
CGATTCGACCCTCCTCCGCAACGACAGCCGGGGCTTCGAGACGGCCGGGT
ACCCCGGCATCTTCTATCTGGGCAGCGGACCTCCGAACGTGAGCGGATCG
ACGCTCGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114357:261..572-

>mRNA_M-pyrifera_M_contig114357.2999.1 ID=mRNA_M-pyrifera_M_contig114357.2999.1|Name=mRNA_M-pyrifera_M_contig114357.2999.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig114357:261..572- (Macrocystis pyrifera P11B4 male)
CACAACTCGGCCACCGGGTGGGGCGCCAACCCGCAGCGAGCGGGGACCCC
GGGCGGCGGCAACGGTGGTGCGATCGCCAACGACGGCAACACCTACACGC
TCACCCTGATCGACACGGTGGTCACCGACAATGTCGCCAACGAGGGCGGC
GGCGGTGTGTTCTACGTGAGCAACAACCGCACCGGACATCTCGTCATCAC
CGATTCGACCCTCCTCCGCAACGACAGCCGGGGCTTCGAGACGGCCGGGT
ACCCCGGCATCTTCTATCTGGGCAGCGGACCTCCGAACGTGAGCGGATCG
ACGCTCGGGTGACACAACTCGGCCACCGGGTGGGGCGCCAACCCGCAGCG
AGCGGGGACCCCGGGCGGCGGCAACGGTGGTGCGATCGCCAACGACGGCA
ACACCTACACGCTCACCCTGATCGACACGGTGGTCACCGACAATGTCGCC
AACGAGGGCGGCGGCGGTGTGTTCTACGTGAGCAACAACCGCACCGGACA
TCTCGTCATCACCGATTCGACCCTCCTCCGCAACGACAGCCGGGGCTTCG
AGACGGCCGGGTACCCCGGCATCTTCTATCTGGGCAGCGGACCTCCGAAC
GTGAGCGGATCGACGCTCGGGTGA
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