mRNA_M-pyrifera_M_contig114345.2996.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114345.2996.1
Unique NamemRNA_M-pyrifera_M_contig114345.2996.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114345.2996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114345contigM-pyrifera_M_contig114345:107..544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size438
Cds size435
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.0928297-UTR-M-pyrifera_M_contig114345:106..1091622815660.0928297-UTR-M-pyrifera_M_contig114345:106..109Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114345 107..109 +
1692277509.4284253-UTR-M-pyrifera_M_contig114345:106..1091692277509.4284253-UTR-M-pyrifera_M_contig114345:106..109Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114345 107..109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.1052525-CDS-M-pyrifera_M_contig114345:109..5441622815660.1052525-CDS-M-pyrifera_M_contig114345:109..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114345 110..544 +
1692277509.4385076-CDS-M-pyrifera_M_contig114345:109..5441692277509.4385076-CDS-M-pyrifera_M_contig114345:109..544Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114345 110..544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114345.2996.1prot_M-pyrifera_M_contig114345.2996.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114345 110..544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114345.2996.1

>prot_M-pyrifera_M_contig114345.2996.1 ID=prot_M-pyrifera_M_contig114345.2996.1|Name=mRNA_M-pyrifera_M_contig114345.2996.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
MSATSAGWLGWAVRKNSGMVGATAVIGTPHNNKVLQRKLNGKSTSQIDTV
PDGTETLDEDFTSLSSSGGGTTLKFRRKAVTDKSSRDGDIQTGEGVATSI
IWARGSSSSFSKHTSRGISSFKAKPASPSPTPSPSSSPPSTPSTT
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mRNA from alignment at M-pyrifera_M_contig114345:107..544+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114345.2996.1 ID=mRNA_M-pyrifera_M_contig114345.2996.1|Name=mRNA_M-pyrifera_M_contig114345.2996.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig114345:107..544+ (Macrocystis pyrifera P11B4 male)
CGTATGAGTGCGACCAGCGCCGGATGGCTCGGGTGGGCGGTGCGGAAAAA
TAGCGGAATGGTGGGTGCGACTGCAGTCATTGGAACTCCACACAACAACA
AGGTGTTGCAACGGAAACTGAACGGAAAATCCACTTCCCAAATCGACACT
GTTCCTGATGGAACGGAAACGTTGGACGAAGACTTTACCTCTCTGTCCTC
TTCTGGAGGTGGGACGACTCTAAAATTCCGCAGAAAGGCTGTCACGGACA
AGAGTTCTCGTGATGGAGACATCCAGACAGGAGAAGGAGTTGCCACTTCC
ATCATTTGGGCAAGAGGATCTTCTTCCTCATTTTCCAAGCACACTTCTCG
TGGAATTTCTTCCTTCAAAGCCAAACCAGCTTCTCCATCCCCAACCCCCT
CCCCTTCCTCCTCCCCACCCTCCACCCCTTCCACCACC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114345:107..544+

>mRNA_M-pyrifera_M_contig114345.2996.1 ID=mRNA_M-pyrifera_M_contig114345.2996.1|Name=mRNA_M-pyrifera_M_contig114345.2996.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig114345:107..544+ (Macrocystis pyrifera P11B4 male)
ATGAGTGCGACCAGCGCCGGATGGCTCGGGTGGGCGGTGCGGAAAAATAG
CGGAATGGTGGGTGCGACTGCAGTCATTGGAACTCCACACAACAACAAGG
TGTTGCAACGGAAACTGAACGGAAAATCCACTTCCCAAATCGACACTGTT
CCTGATGGAACGGAAACGTTGGACGAAGACTTTACCTCTCTGTCCTCTTC
TGGAGGTGGGACGACTCTAAAATTCCGCAGAAAGGCTGTCACGGACAAGA
GTTCTCGTGATGGAGACATCCAGACAGGAGAAGGAGTTGCCACTTCCATC
ATTTGGGCAAGAGGATCTTCTTCCTCATTTTCCAAGCACACTTCTCGTGG
AATTTCTTCCTTCAAAGCCAAACCAGCTTCTCCATCCCCAACCCCCTCCC
CTTCCTCCTCCCCACCCTCCACCCCTTCCACCACCATGAGTGCGACCAGC
GCCGGATGGCTCGGGTGGGCGGTGCGGAAAAATAGCGGAATGGTGGGTGC
GACTGCAGTCATTGGAACTCCACACAACAACAAGGTGTTGCAACGGAAAC
TGAACGGAAAATCCACTTCCCAAATCGACACTGTTCCTGATGGAACGGAA
ACGTTGGACGAAGACTTTACCTCTCTGTCCTCTTCTGGAGGTGGGACGAC
TCTAAAATTCCGCAGAAAGGCTGTCACGGACAAGAGTTCTCGTGATGGAG
ACATCCAGACAGGAGAAGGAGTTGCCACTTCCATCATTTGGGCAAGAGGA
TCTTCTTCCTCATTTTCCAAGCACACTTCTCGTGGAATTTCTTCCTTCAA
AGCCAAACCAGCTTCTCCATCCCCAACCCCCTCCCCTTCCTCCTCCCCAC
CCTCCACCCCTTCCACCACC
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