mRNA_M-pyrifera_M_contig114339.2993.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114339.2993.1
Unique NamemRNA_M-pyrifera_M_contig114339.2993.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114339.2993.1 vs. uniprot
Match: A0A2E6D935_9BACT (Uncharacterized protein n=3 Tax=cellular organisms TaxID=131567 RepID=A0A2E6D935_9BACT)

HSP 1 Score: 145 bits (366), Expect = 1.510e-38
Identity = 80/165 (48.48%), Postives = 96/165 (58.18%), Query Frame = 1
Query:    1 GPGFWLKNQALSRVASDRSGRVRVSFGVEGDDDASHDEALQLRCAELARAVFPETALLRDDPALFELLEALDDPLGEDRADGRELYLTQDIAYWNAPNGGALMHHDAFEEDYAERQRAVVYAQLTGATAWIALSTQDLAARVVEFCEALADGEMPWVKSSLFSGR 495
            G   W+K+  LS    DRS RVR S G EG +DAS D     R   LA+ + PET  +   PAL E LE        D  DG  ++ TQ I YWNAP GGALMHHD F E     QR VVY QL G TAW+ALS +DL+ RV+EF E + +GE+ WV+  LF  R
Sbjct:  163 GQDVWVKSGHLSTFDEDRSLRVRFSAGSEGKNDASRDLDAHRRVQSLAQQLLPETRTIESTPALLEPLE--------DWIDG-PVFFTQHIGYWNAPGGGALMHHDGFREPIEGGQRGVVYVQLAGRTAWVALSIEDLSRRVIEFVEYMQEGELAWVREDLFPDR 318          
BLAST of mRNA_M-pyrifera_M_contig114339.2993.1 vs. uniprot
Match: A0A518ETR0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518ETR0_9BACT)

HSP 1 Score: 144 bits (362), Expect = 7.060e-38
Identity = 78/160 (48.75%), Postives = 97/160 (60.62%), Query Frame = 1
Query:   10 FWLKNQALSRVASDRSGRVRVSFGVEGDDDASHDEALQLRCAELARAVFPETALLRDDPALFELLEALDDPLGEDRADGRELYLTQDIAYWNAPNGGALMHHDAFEEDYAERQRAVVYAQLTGATAWIALSTQDLAARVVEFCEALADGEMPWVKSSLFS 489
             W+K+Q LS    D S RVR SFG EG DDAS D A      EL+  + PE A +  DP +  LLE            G    LTQ IAYWNAP+GGAL HHDAF+E    RQR V+Y+Q+TG+TAW+ALS QDL  RV EF E + DG +P  +++L +
Sbjct:  156 LWIKSQRLSLHPDDDSVRVRFSFGEEGPDDASRDMARHKLVRELSSRLMPEAAAINADPEILGLLEEWI---------GATPLLTQGIAYWNAPSGGALFHHDAFDEPLQGRQRGVLYSQVTGSTAWLALSVQDLVLRVREFVEFMEDGTLPAARTALIT 306          
BLAST of mRNA_M-pyrifera_M_contig114339.2993.1 vs. uniprot
Match: A0A7C8CX31_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C8CX31_9BACT)

HSP 1 Score: 134 bits (338), Expect = 1.480e-34
Identity = 80/161 (49.69%), Postives = 95/161 (59.01%), Query Frame = 1
Query:   13 WLKNQALSRVASDRSGRVRVSFGVEGDDDASHDEALQLRCAELARAVFPETALLRDDPALFELLEALDDPLGEDRADGRELYLTQDIAYWNAPNGGALMHHDAFEEDYAERQRAVVYAQLTGATAWIALSTQDLAARVVEFCEALADGEMPWVKSSLFSGR 495
            W+K+  LS    D S R+RVSFG E DDDA+ + A Q   A+LA  V P  A L   PAL   +E L   LG      + LY TQ IAYWNAP GGAL HHDAF+E  A  QR V++ QL G TAW+ALS  DL  R+ EF EAL +G   WV   L+  R
Sbjct:  173 WMKSARLSDWEGDESLRLRVSFGREVDDDAARNAASQAAVADLAERVLPGAARLSQAPALRRQVEDL---LGT-----KALY-TQHIAYWNAPGGGALFHHDAFDEATAGGQRGVIFTQLVGQTAWLALSNADLGRRIAEFTEALDEGLNDWVLRELWPER 324          
BLAST of mRNA_M-pyrifera_M_contig114339.2993.1 vs. uniprot
Match: A0A7C2ALQ0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2ALQ0_9BACT)

HSP 1 Score: 133 bits (334), Expect = 6.460e-34
Identity = 75/158 (47.47%), Postives = 90/158 (56.96%), Query Frame = 1
Query:   13 WLKNQALSRVASDRSGRVRVSFGVEGDDDASHDEALQLRCAELARAVFPETALLRDDPALFELLEALDDPLGEDRADGRELYLTQDIAYWNAPNGGALMHHDAF-EEDYAERQRAVVYAQLTGATAWIALSTQDLAARVVEFCEALADGEMPWVKSSL 483
            W+K   LS    DRS RVRV FG+EGDDDAS D        E A  + P    L     L++ +E         R  GR +     IAYWNAPNGGA  HHDAF EE    RQ  V+YAQLTG T W+ALS ++LAARV EF   + +GEMPW++  L
Sbjct:  193 WVKTGRLSLAKDDRSLRVRVFFGIEGDDDASADPLRHAAVREFAERILPGARSLAGATELWQRIE---------RLAGRPVQPAAHIAYWNAPNGGARFHHDAFPEESGPTRQLGVLYAQLTGRTLWLALSIEELAARVREFVGWIREGEMPWLREQL 341          
BLAST of mRNA_M-pyrifera_M_contig114339.2993.1 vs. uniprot
Match: A0A518CW50_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518CW50_9BACT)

HSP 1 Score: 132 bits (333), Expect = 7.740e-34
Identity = 78/165 (47.27%), Postives = 95/165 (57.58%), Query Frame = 1
Query:    1 GPGFWLKNQALSRVASDRSGRVRVSFGVEGDDDASHDEALQLRCAELARAVFPETALLRDDPALFELLE---ALDDPLGEDRADGRELYLTQDIAYWNAPNGGALMHHDAFEE-DYAERQRAVVYAQLTGATAWIALSTQDLAARVVEFCEALADGEMPWVKSSL 483
            GP  W K   LS    D S R+R  FG E DDDA+     Q     LARA+ PE AL+ DD ALF  ++   A D+PLG              IAYWN P GGAL HHDAFE  +  +RQ  V+Y QL GATAW+ALST  LA R+ +F  AL +GE+PW++  L
Sbjct:  164 GPRPWAKVGRLSTHDGDASLRLRTGFGNEPDDDANPSPPGQRATLSLARALLPELALVNDDKALFAAIDEVSACDEPLGP----------ACPIAYWNRPGGGALFHHDAFEAVEGPDRQFGVLYVQLAGATAWLALSTTQLARRLEQFAAALDEGEVPWLREQL 318          
BLAST of mRNA_M-pyrifera_M_contig114339.2993.1 vs. uniprot
Match: A0A2D6HGT2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HGT2_9BACT)

HSP 1 Score: 132 bits (332), Expect = 1.560e-33
Identity = 75/159 (47.17%), Postives = 92/159 (57.86%), Query Frame = 1
Query:   10 FWLKNQALSRVASDRSGRVRVSFGVEGDDDASHDEALQLRCAELARAVFPETALLRDDPALFELLEALDDPLGEDRADGRELYLTQDIAYWNAPNGGALMHHDAFEEDYAERQRAVVYAQLTGATAWIALSTQDLAARVVEFCEALADGEMPWVKSSLF 486
             W+K+  LS    D S R+R++FG E DDDAS D       AEL  A+ P      ++ AL   LEA+          G  L +T  IAYWNAP GGA  HHDAF  D    Q  V + Q+ G TAW+ALS  DLAARV EFCE+LADGE+PW+ + LF
Sbjct:  167 LWIKSGRLSDHPEDASLRLRLAFGREVDDDASADALRHRLVAELTDALLPAVGAATENAALAGALEAIS---------GESLAMTGAIAYWNAPEGGARFHHDAFAADNG--QVGVCFLQVEGRTAWLALSLADLAARVREFCESLADGELPWLTAELF 314          
BLAST of mRNA_M-pyrifera_M_contig114339.2993.1 vs. uniprot
Match: A0A2D5AWC6_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5AWC6_9BACT)

HSP 1 Score: 130 bits (327), Expect = 4.140e-33
Identity = 77/160 (48.12%), Postives = 94/160 (58.75%), Query Frame = 1
Query:   10 FWLKNQALSRVASDRSGRVRVSFGVEGDDDASHDEALQLRCAELARAVFPETALLRDDPALFELLEALDDPLGEDRADGRELYLTQDIAYWNAPNGGALMHHDAFEEDYAERQRAVVYAQLTGATAWIALSTQDLAARVVEFCEALADGEMPWVKSSLFS 489
             W+K   LS    DRS R+R+SFG EG DDAS DE+     A L RA+FP    L  + AL   LE     LG     G  L+ TQ I YWNAP GGAL HHDAF+E     QR V+Y QL G+TAW+ALS +DLA RV EF    A+ E+  + + LF+
Sbjct:  155 IWVKTSRLSTDERDRSLRLRISFGEEGSDDASRDESRHRAVAALGRALFPSVQGLEAECALRGTLEEF---LG-----GAVLF-TQHIGYWNAPEGGALFHHDAFDESVEGGQRGVLYVQLDGSTAWLALSIEDLALRVREFAGWFAEDELVELAAELFT 305          
BLAST of mRNA_M-pyrifera_M_contig114339.2993.1 vs. uniprot
Match: A0A518BF36_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BF36_9BACT)

HSP 1 Score: 117 bits (294), Expect = 3.880e-28
Identity = 71/153 (46.41%), Postives = 84/153 (54.90%), Query Frame = 1
Query:   10 FWLKNQALSRVASDRSGRVRVSFGVEGDDDASHDEALQLRCAELARAVFPETALLRDDPALFELL-EALDDPLGEDRADGRELYLTQDIAYWNAPNGGALMHHDAFEEDYAERQRAVVYAQLTGATAWIALSTQDLAARVVEFCEALADGEMP 465
             W+K   LS    D S R+R +FG E +DDAS DE      A L RA  PE  L+    AL E   EA D+           L  T  IAYWNAP GGAL HHDAF  D ++ QR V+Y QL G TAW+A+S+ DL  R+ EF   LAD E P
Sbjct:  176 LWVKTGRLSTYPEDTSLRLRFAFGAEREDDASDDEPRHRATAALGRAAIPELRLVGPGSALIERASEAADE----------SLQATGAIAYWNAPEGGALFHHDAFSGDDSQGQRGVLYTQLVGRTAWLAISSADLVRRLEEF---LADEEEP 315          
BLAST of mRNA_M-pyrifera_M_contig114339.2993.1 vs. uniprot
Match: A0A2E5YLY3_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A2E5YLY3_9DELT)

HSP 1 Score: 114 bits (285), Expect = 5.720e-27
Identity = 69/159 (43.40%), Postives = 87/159 (54.72%), Query Frame = 1
Query:   13 WLKNQALSRVASDRSGRVRVSFGVEGDDDASHDEALQLRCAELARAVFPETA-LLRDDPALFELLEALDDPLGEDRADGRELYLTQDIAYWNAPNGGALMHHDAFEEDYAERQRAVVYAQLTGATAWIALSTQDLAARVVEFCEALADGEMPWVKSSLF 486
            WLK   LS    D S R+R+ FG E  DDAS     Q   + L RA+ P    +  DD     L + L  P            L+Q IAYWN P GGAL+HHDAF E+    QR V+YAQL+G T W+ALS  DLAARV E  EA+  G++P ++  L+
Sbjct:  162 WLKLTKLSNHPEDDSRRLRIGFGRERSDDASPLLERQRLISSLGRALLPGMEEICADDQLTPRLSKLLRGPA----------LLSQPIAYWNRPGGGALLHHDAFGENSPSGQRGVLYAQLSGETFWLALSINDLAARVKEMAEAMTLGDLPELREQLY 310          
BLAST of mRNA_M-pyrifera_M_contig114339.2993.1 vs. uniprot
Match: A0A800MHL6_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800MHL6_9BACT)

HSP 1 Score: 102 bits (254), Expect = 2.060e-22
Identity = 63/168 (37.50%), Postives = 84/168 (50.00%), Query Frame = 1
Query:   13 WLKNQALSRVASDRSGRVRVSFGVEGDDDASHDEALQLRCAELARAVFPET-ALLRDDPALFELLEALDDPLGEDRADGRELYLTQDIAYWNAPNGGALMHHDAFEEDYAERQRAVVYAQLTGATAWIALSTQDLAARVVEFCEALADGEMPWVKSSLFSGRSGQAAL 513
            W K   LS + S+ S R+R+S G E +D+ + D       AEL +A+ P    + RD     +L   L  P            LTQ IAYWN P GGAL HHDAF+E     QR V + Q  G +AW+ALSTQDLA  V+ F   L  G+   ++  L    + +  L
Sbjct:  169 WAKASMLSDLPSESSMRLRLSAGREPEDEGNRDLPTLRTVAELGQALLPGMKTVARDSSLQGQLTNLLGSPP----------LLTQAIAYWNTPGGGALFHHDAFDEPLIGGQRGVCFVQAAGRSAWLALSTQDLAHEVLGFLRELLSGDWHHLEEGLIPNPAARTIL 326          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114339.2993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E6D935_9BACT1.510e-3848.48Uncharacterized protein n=3 Tax=cellular organisms... [more]
A0A518ETR0_9BACT7.060e-3848.75Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C8CX31_9BACT1.480e-3449.69Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7C2ALQ0_9BACT6.460e-3447.47Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518CW50_9BACT7.740e-3447.27Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D6HGT2_9BACT1.560e-3347.17Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D5AWC6_9BACT4.140e-3348.13Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518BF36_9BACT3.880e-2846.41Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2E5YLY3_9DELT5.720e-2743.40Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A800MHL6_9BACT2.060e-2237.50Uncharacterized protein n=2 Tax=Planctomycetes bac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114339contigM-pyrifera_M_contig114339:53..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.9568079-CDS-M-pyrifera_M_contig114339:52..5651622815659.9568079-CDS-M-pyrifera_M_contig114339:52..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114339 53..565 +
1692277509.3748004-CDS-M-pyrifera_M_contig114339:52..5651692277509.3748004-CDS-M-pyrifera_M_contig114339:52..565Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114339 53..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114339.2993.1prot_M-pyrifera_M_contig114339.2993.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114339 53..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114339.2993.1

>prot_M-pyrifera_M_contig114339.2993.1 ID=prot_M-pyrifera_M_contig114339.2993.1|Name=mRNA_M-pyrifera_M_contig114339.2993.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=171bp
GPGFWLKNQALSRVASDRSGRVRVSFGVEGDDDASHDEALQLRCAELARA
VFPETALLRDDPALFELLEALDDPLGEDRADGRELYLTQDIAYWNAPNGG
ALMHHDAFEEDYAERQRAVVYAQLTGATAWIALSTQDLAARVVEFCEALA
DGEMPWVKSSLFSGRSGQAAL
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mRNA from alignment at M-pyrifera_M_contig114339:53..565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114339.2993.1 ID=mRNA_M-pyrifera_M_contig114339.2993.1|Name=mRNA_M-pyrifera_M_contig114339.2993.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=513bp|location=Sequence derived from alignment at M-pyrifera_M_contig114339:53..565+ (Macrocystis pyrifera P11B4 male)
GGGCCCGGCTTCTGGCTCAAGAATCAGGCGCTGTCGCGGGTCGCGAGCGA TCGGTCGGGGCGCGTGCGGGTGTCGTTCGGCGTCGAGGGCGACGACGATG CGAGCCACGACGAAGCGCTGCAGCTGCGCTGCGCCGAGCTGGCGCGGGCG GTGTTCCCCGAGACGGCGCTGCTGCGCGACGACCCCGCGCTGTTCGAGCT GCTCGAAGCCCTCGACGATCCGCTCGGCGAGGACCGCGCGGACGGCCGCG AGCTCTACCTGACCCAGGACATCGCCTACTGGAACGCGCCCAACGGCGGC GCGCTGATGCACCACGACGCGTTCGAGGAGGACTACGCCGAGCGCCAGCG CGCGGTGGTCTACGCGCAGCTCACCGGCGCGACGGCGTGGATCGCGCTGT CGACCCAGGACCTCGCGGCGCGCGTGGTGGAGTTCTGCGAAGCGCTGGCC GATGGCGAGATGCCGTGGGTCAAGAGCTCGCTGTTCAGCGGCCGGAGTGG CCAGGCGGCGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114339:53..565+

>mRNA_M-pyrifera_M_contig114339.2993.1 ID=mRNA_M-pyrifera_M_contig114339.2993.1|Name=mRNA_M-pyrifera_M_contig114339.2993.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1026bp|location=Sequence derived from alignment at M-pyrifera_M_contig114339:53..565+ (Macrocystis pyrifera P11B4 male)
GGGCCCGGCTTCTGGCTCAAGAATCAGGCGCTGTCGCGGGTCGCGAGCGA
TCGGTCGGGGCGCGTGCGGGTGTCGTTCGGCGTCGAGGGCGACGACGATG
CGAGCCACGACGAAGCGCTGCAGCTGCGCTGCGCCGAGCTGGCGCGGGCG
GTGTTCCCCGAGACGGCGCTGCTGCGCGACGACCCCGCGCTGTTCGAGCT
GCTCGAAGCCCTCGACGATCCGCTCGGCGAGGACCGCGCGGACGGCCGCG
AGCTCTACCTGACCCAGGACATCGCCTACTGGAACGCGCCCAACGGCGGC
GCGCTGATGCACCACGACGCGTTCGAGGAGGACTACGCCGAGCGCCAGCG
CGCGGTGGTCTACGCGCAGCTCACCGGCGCGACGGCGTGGATCGCGCTGT
CGACCCAGGACCTCGCGGCGCGCGTGGTGGAGTTCTGCGAAGCGCTGGCC
GATGGCGAGATGCCGTGGGTCAAGAGCTCGCTGTTCAGCGGCCGGAGTGG
CCAGGCGGCGCTGGGGCCCGGCTTCTGGCTCAAGAATCAGGCGCTGTCGC
GGGTCGCGAGCGATCGGTCGGGGCGCGTGCGGGTGTCGTTCGGCGTCGAG
GGCGACGACGATGCGAGCCACGACGAAGCGCTGCAGCTGCGCTGCGCCGA
GCTGGCGCGGGCGGTGTTCCCCGAGACGGCGCTGCTGCGCGACGACCCCG
CGCTGTTCGAGCTGCTCGAAGCCCTCGACGATCCGCTCGGCGAGGACCGC
GCGGACGGCCGCGAGCTCTACCTGACCCAGGACATCGCCTACTGGAACGC
GCCCAACGGCGGCGCGCTGATGCACCACGACGCGTTCGAGGAGGACTACG
CCGAGCGCCAGCGCGCGGTGGTCTACGCGCAGCTCACCGGCGCGACGGCG
TGGATCGCGCTGTCGACCCAGGACCTCGCGGCGCGCGTGGTGGAGTTCTG
CGAAGCGCTGGCCGATGGCGAGATGCCGTGGGTCAAGAGCTCGCTGTTCA
GCGGCCGGAGTGGCCAGGCGGCGCTG
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