mRNA_M-pyrifera_M_contig114320.2988.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114320.2988.1
Unique NamemRNA_M-pyrifera_M_contig114320.2988.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig114320.2988.1 vs. uniprot
Match: A0A058ZDA1_FONAL (Uncharacterized protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZDA1_FONAL)

HSP 1 Score: 50.1 bits (118), Expect = 8.710e-5
Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:   13 DPHLFGFDGSAYDFMGDAGAVYNLITDRDLQVNFDVVTITELSQMMKAFIGQMAFTTNS 189
            DPH  GF+G+ Y F G+AG  YN+++DRD+QVN      T L  +   ++G+++    S
Sbjct:  178 DPHFMGFNGADYYFEGEAGRSYNIVSDRDVQVN---AQFTRLHNLKGTYMGRVSILVGS 233
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114320.2988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A058ZDA1_FONAL8.710e-538.98Uncharacterized protein n=1 Tax=Fonticula alba Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114320contigM-pyrifera_M_contig114320:204..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.7597432-CDS-M-pyrifera_M_contig114320:203..5241622815659.7597432-CDS-M-pyrifera_M_contig114320:203..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114320 204..524 +
1692277509.292783-CDS-M-pyrifera_M_contig114320:203..5241692277509.292783-CDS-M-pyrifera_M_contig114320:203..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114320 204..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114320.2988.1prot_M-pyrifera_M_contig114320.2988.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114320 204..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114320.2988.1

>prot_M-pyrifera_M_contig114320.2988.1 ID=prot_M-pyrifera_M_contig114320.2988.1|Name=mRNA_M-pyrifera_M_contig114320.2988.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
AGGGDPHLFGFDGSAYDFMGDAGAVYNLITDRDLQVNFDVVTITELSQMM
KAFIGQMAFTTNSGDRVVVDAGSSDRAASVTINGEETAAAELTGTLDGRS
FKLTRNS
back to top

mRNA from alignment at M-pyrifera_M_contig114320:204..524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114320.2988.1 ID=mRNA_M-pyrifera_M_contig114320.2988.1|Name=mRNA_M-pyrifera_M_contig114320.2988.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig114320:204..524+ (Macrocystis pyrifera P11B4 male)
GCAGGTGGCGGCGACCCCCACCTCTTCGGCTTCGATGGCTCTGCCTACGA
CTTCATGGGCGACGCGGGCGCCGTCTACAACCTCATCACCGACAGGGACC
TCCAGGTGAACTTTGATGTGGTCACGATCACAGAGCTGAGCCAGATGATG
AAGGCGTTCATCGGCCAGATGGCATTCACGACCAACTCGGGCGACCGCGT
GGTCGTGGACGCCGGCAGCTCGGACCGCGCCGCCTCGGTGACCATCAACG
GCGAGGAGACGGCTGCGGCCGAGCTGACGGGCACTTTGGACGGCAGGAGC
TTCAAGCTGACGCGCAACTCG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig114320:204..524+

>mRNA_M-pyrifera_M_contig114320.2988.1 ID=mRNA_M-pyrifera_M_contig114320.2988.1|Name=mRNA_M-pyrifera_M_contig114320.2988.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig114320:204..524+ (Macrocystis pyrifera P11B4 male)
GCAGGTGGCGGCGACCCCCACCTCTTCGGCTTCGATGGCTCTGCCTACGA
CTTCATGGGCGACGCGGGCGCCGTCTACAACCTCATCACCGACAGGGACC
TCCAGGTGAACTTTGATGTGGTCACGATCACAGAGCTGAGCCAGATGATG
AAGGCGTTCATCGGCCAGATGGCATTCACGACCAACTCGGGCGACCGCGT
GGTCGTGGACGCCGGCAGCTCGGACCGCGCCGCCTCGGTGACCATCAACG
GCGAGGAGACGGCTGCGGCCGAGCTGACGGGCACTTTGGACGGCAGGAGC
TTCAAGCTGACGCGCAACTCGGCAGGTGGCGGCGACCCCCACCTCTTCGG
CTTCGATGGCTCTGCCTACGACTTCATGGGCGACGCGGGCGCCGTCTACA
ACCTCATCACCGACAGGGACCTCCAGGTGAACTTTGATGTGGTCACGATC
ACAGAGCTGAGCCAGATGATGAAGGCGTTCATCGGCCAGATGGCATTCAC
GACCAACTCGGGCGACCGCGTGGTCGTGGACGCCGGCAGCTCGGACCGCG
CCGCCTCGGTGACCATCAACGGCGAGGAGACGGCTGCGGCCGAGCTGACG
GGCACTTTGGACGGCAGGAGCTTCAAGCTGACGCGCAACTCG
back to top