mRNA_M-pyrifera_M_contig114298.2978.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114298.2978.1
Unique NamemRNA_M-pyrifera_M_contig114298.2978.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114298.2978.1 vs. uniprot
Match: A0A1U7ZUX2_NELNU (histone-lysine N-methyltransferase ATXR6 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZUX2_NELNU)

HSP 1 Score: 79.0 bits (193), Expect = 3.570e-15
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   85 GDLVISEISCTMCQCGDSEDSMLLCDSCNRGFHMTCLVPPLVRLPPGTWFCPPCTRH 255
            G+   S++ C  C+ GD+ D +LLCD C+RGFH+ CL P LV +P G+WFCPPC+RH
Sbjct:   29 GEKDYSDVYCEECRSGDASDELLLCDKCDRGFHLFCLRPVLVSVPKGSWFCPPCSRH 85
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BLAST of mRNA_M-pyrifera_M_contig114298.2978.1 vs. uniprot
Match: A0A196S4P9_BLAHN (Histone-lysine N-methyltransferase ATXR5 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S4P9_BLAHN)

HSP 1 Score: 78.6 bits (192), Expect = 6.560e-15
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:    1 RVVVRQAVHGMSIVHVRRLARRPTRSSVGDLVISEISCTMCQCGDSEDSMLLCDSCNRGFHMTCLVPPLVRLPPGTWFCPPC 246
            R+V+R+   GM++ H+R+LAR       G++   +  C +C  GD E++++LCD CN+GFH+ C+ P L  +P G WFC  C
Sbjct:   49 RIVLREETSGMNVGHLRQLARMGGVIPFGEVAFCKTMCEICHKGDDEENIVLCDKCNKGFHLYCVKPILPSVPSGEWFCDNC 130
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BLAST of mRNA_M-pyrifera_M_contig114298.2978.1 vs. uniprot
Match: A0A804IU48_MUSAM (Uncharacterized protein n=2 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804IU48_MUSAM)

HSP 1 Score: 76.3 bits (186), Expect = 3.180e-14
Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:   49 RRLARRPTRSSVGDLVISEISCTMCQCGDSEDSMLLCDSCNRGFHMTCLVPPLVRLPPGTWFCPPCT 249
            RR    P+ SS+   V+  I C  C  G+S D +LLCD C+RGFH+ CL P L  +P G WFCPPC+
Sbjct:    8 RRRTNAPSSSSLSSAVLDAIRCEECGSGESADKLLLCDRCDRGFHLFCLRPILACVPKGLWFCPPCS 74
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BLAST of mRNA_M-pyrifera_M_contig114298.2978.1 vs. uniprot
Match: A0A8B8MQK9_9MYRT (probable Histone-lysine N-methyltransferase ATXR5 n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8MQK9_9MYRT)

HSP 1 Score: 72.8 bits (177), Expect = 3.380e-14
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  100 SEISCTMCQCGDSEDSMLLCDSCNRGFHMTCLVPPLVRLPPGTWFCPPCTRH 255
            S++ C  C+ GDS D +LLCD C++GFHM CL P +V+LP G+W CP C  H
Sbjct:   49 SDVICEQCRSGDSADELLLCDKCDKGFHMNCLRPIVVKLPMGSWLCPKCCEH 100
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BLAST of mRNA_M-pyrifera_M_contig114298.2978.1 vs. uniprot
Match: K8ELP5_9CHLO (Unnamed protein product n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8ELP5_9CHLO)

HSP 1 Score: 75.9 bits (185), Expect = 7.400e-14
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:   91 LVISEISCTMCQCGDSEDSMLLCDSCNRGFHMTCLVPPLVRLPPGTWFCPPCTRHAHAALDDGTAD 288
            LV+ E+ C MCQ GD ED +LLCD C+ GFH+ CL PPL ++P G WFC  C + A   +DD  A+
Sbjct: 1566 LVLDEVKCEMCQGGDREDEVLLCDGCDCGFHIFCLKPPLKKIPDGDWFCEKC-KAALEPVDDDDAE 1630
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BLAST of mRNA_M-pyrifera_M_contig114298.2978.1 vs. uniprot
Match: F6I0G7_VITVI (PHD-type domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=F6I0G7_VITVI)

HSP 1 Score: 72.4 bits (176), Expect = 1.050e-13
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:  100 SEISCTMCQCGDSEDSMLLCDSCNRGFHMTCLVPPLVRLPPGTWFCPPCT 249
            S++ C  C  GD +D +LLCD C+RGFHM+CL P +VR+P GTW CP C+
Sbjct:   58 SDVRCVQCGSGDHDDELLLCDKCDRGFHMSCLRPIVVRIPIGTWLCPSCS 107
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BLAST of mRNA_M-pyrifera_M_contig114298.2978.1 vs. uniprot
Match: A0A444D8X0_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444D8X0_ENSVE)

HSP 1 Score: 74.3 bits (181), Expect = 1.720e-13
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:   49 RRLARRPTRSSVGDLVISEISCTMCQCGDSEDSMLLCDSCNRGFHMTCLVPPLVRLPPGTWFCPPCT 249
            RR    P+ SS+   V+  I C  C  G+S+D +LLCD C+RGFH+ CL P L  +P G WFCP C+
Sbjct:    8 RRRTNAPSSSSLSSAVLDAIRCQECGSGESDDELLLCDRCDRGFHLFCLRPILACVPKGLWFCPSCS 74
[Close]
BLAST of mRNA_M-pyrifera_M_contig114298.2978.1 vs. uniprot
Match: A0A8K0NZK0_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0NZK0_LADFU)

HSP 1 Score: 74.7 bits (182), Expect = 1.760e-13
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = 1 
Query:    4 VVVRQAVHGMSIVHVRRLARRPTRSSVGD----LVISEIS-----CTMCQCGDSEDSMLLCDSCNRGFHMTCLVPPLVRLPPGTWFCPPCTRHAHAALDDGTA 285
            +VV   V G  I  +R + R+   S   D     +IS+I      C +C  GD EDS+LLCD C+RG+H+ CL+PPL  +P   WFCP CT  A + L    A
Sbjct:  234 IVVLDGVCGKEIRRLR-IPRKTRSSGTQDDDDVTLISQIEEDPTYCEVCGSGDREDSLLLCDGCDRGYHLECLIPPLTSVPIEEWFCPSCTEAATSRLRSARA 335
[Close]
BLAST of mRNA_M-pyrifera_M_contig114298.2978.1 vs. uniprot
Match: A0A427A740_ENSVE (PHD-type domain-containing protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427A740_ENSVE)

HSP 1 Score: 74.3 bits (181), Expect = 1.810e-13
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:   49 RRLARRPTRSSVGDLVISEISCTMCQCGDSEDSMLLCDSCNRGFHMTCLVPPLVRLPPGTWFCPPCT 249
            RR    P+ SS+   V+  I C  C  G+S+D +LLCD C+RGFH+ CL P L  +P G WFCP C+
Sbjct:   83 RRRTNAPSSSSLSSAVLDAIRCQECGSGESDDELLLCDRCDRGFHLFCLRPILACVPKGLWFCPSCS 149
[Close]
BLAST of mRNA_M-pyrifera_M_contig114298.2978.1 vs. uniprot
Match: M9MCN0_PSEA3 (DNA-binding protein jumonji/RBP2/SMCY n=1 Tax=Pseudozyma antarctica (strain T-34) TaxID=1151754 RepID=M9MCN0_PSEA3)

HSP 1 Score: 73.9 bits (180), Expect = 3.530e-13
Identity = 36/76 (47.37%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:   73 RSSVGDLVISEISCTMCQCGDSEDSMLLCDSCNRGFHMTCLVPPLVRLPPGTWFCPPC---TRHAHAALDDGTADS 291
            R++ G+L   E  C +C  G+   +MLLCD CNRG+HM CL PPL  +P   WFCPPC   T H     DDG   S
Sbjct:  525 RAATGNLGAEEQMCEICLRGEDGPNMLLCDECNRGYHMYCLQPPLTSIPKSQWFCPPCLVGTGHDFG-FDDGETHS 599
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114298.2978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1U7ZUX2_NELNU3.570e-1554.39histone-lysine N-methyltransferase ATXR6 n=1 Tax=N... [more]
A0A196S4P9_BLAHN6.560e-1540.24Histone-lysine N-methyltransferase ATXR5 n=1 Tax=B... [more]
A0A804IU48_MUSAM3.180e-1449.25Uncharacterized protein n=2 Tax=Musa acuminata sub... [more]
A0A8B8MQK9_9MYRT3.380e-1453.85probable Histone-lysine N-methyltransferase ATXR5 ... [more]
K8ELP5_9CHLO7.400e-1451.52Unnamed protein product n=1 Tax=Bathycoccus prasin... [more]
F6I0G7_VITVI1.050e-1356.00PHD-type domain-containing protein n=1 Tax=Vitis v... [more]
A0A444D8X0_ENSVE1.720e-1347.76Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
A0A8K0NZK0_LADFU1.760e-1340.78Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A427A740_ENSVE1.810e-1347.76PHD-type domain-containing protein n=1 Tax=Ensete ... [more]
M9MCN0_PSEA33.530e-1347.37DNA-binding protein jumonji/RBP2/SMCY n=1 Tax=Pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114298contigM-pyrifera_M_contig114298:72..380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score81.3
Seed ortholog evalue2.7e-13
Seed eggNOG ortholog4432.XP_010252791.1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006275,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009791,GO:0009889,GO:0009900,GO:0009901,GO:0009908,GO:0009987,GO:0010556,GO:0016043,GO:0016278,GO:0016279,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0031323,GO:0031326,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0034968,GO:0036211,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0046976,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048608,GO:0048609,GO:0048653,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0051276,GO:0051726,GO:0060255,GO:0061458,GO:0065007,GO:0070734,GO:0071704,GO:0071840,GO:0080090,GO:0090567,GO:0099402,GO:0140096,GO:1901564,GO:2000112
EggNOG free text desc.Histone-lysine n-methyltransferase
EggNOG OGs37KEG@33090,3G8XB@35493,COG2940@1,KOG1083@2759
COG Functional cat.K
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.1144288-CDS-M-pyrifera_M_contig114298:71..3501622815659.1144288-CDS-M-pyrifera_M_contig114298:71..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114298 72..350 -
1692277508.9336123-CDS-M-pyrifera_M_contig114298:71..3501692277508.9336123-CDS-M-pyrifera_M_contig114298:71..350Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114298 72..350 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.1246808-UTR-M-pyrifera_M_contig114298:350..3801622815659.1246808-UTR-M-pyrifera_M_contig114298:350..380Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114298 351..380 -
1692277508.9535844-UTR-M-pyrifera_M_contig114298:350..3801692277508.9535844-UTR-M-pyrifera_M_contig114298:350..380Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114298 351..380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114298.2978.1prot_M-pyrifera_M_contig114298.2978.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114298 72..350 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114298.2978.1

>prot_M-pyrifera_M_contig114298.2978.1 ID=prot_M-pyrifera_M_contig114298.2978.1|Name=mRNA_M-pyrifera_M_contig114298.2978.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
MSIVHVRRLARRPTRSSVGDLVISEISCTMCQCGDSEDSMLLCDSCNRGF
HMTCLVPPLVRLPPGTWFCPPCTRHAHAALDDGTADSPEATEL
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mRNA from alignment at M-pyrifera_M_contig114298:72..380-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114298.2978.1 ID=mRNA_M-pyrifera_M_contig114298.2978.1|Name=mRNA_M-pyrifera_M_contig114298.2978.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig114298:72..380- (Macrocystis pyrifera P11B4 male)
CGTGTGGTCGTCAGACAAGCAGTGCATGGCATGTCCATTGTGCACGTTCG
CCGCCTGGCACGTCGTCCCACGCGCTCCTCCGTTGGTGACTTGGTCATTT
CTGAGATCAGCTGTACCATGTGTCAGTGTGGTGACTCGGAGGACTCCATG
CTGCTGTGCGACAGTTGCAACCGCGGCTTCCACATGACATGCCTCGTCCC
TCCCCTCGTCCGCCTCCCCCCGGGCACGTGGTTCTGCCCCCCGTGCACCA
GGCACGCCCACGCAGCACTGGACGATGGCACCGCAGATTCTCCAGAGGCA
ACAGAGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114298:72..380-

>mRNA_M-pyrifera_M_contig114298.2978.1 ID=mRNA_M-pyrifera_M_contig114298.2978.1|Name=mRNA_M-pyrifera_M_contig114298.2978.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig114298:72..380- (Macrocystis pyrifera P11B4 male)
ATGTCCATTGTGCACGTTCGCCGCCTGGCACGTCGTCCCACGCGCTCCTC
CGTTGGTGACTTGGTCATTTCTGAGATCAGCTGTACCATGTGTCAGTGTG
GTGACTCGGAGGACTCCATGCTGCTGTGCGACAGTTGCAACCGCGGCTTC
CACATGACATGCCTCGTCCCTCCCCTCGTCCGCCTCCCCCCGGGCACGTG
GTTCTGCCCCCCGTGCACCAGGCACGCCCACGCAGCACTGGACGATGGCA
CCGCAGATTCTCCAGAGGCAACAGAGCTGATGTCCATTGTGCACGTTCGC
CGCCTGGCACGTCGTCCCACGCGCTCCTCCGTTGGTGACTTGGTCATTTC
TGAGATCAGCTGTACCATGTGTCAGTGTGGTGACTCGGAGGACTCCATGC
TGCTGTGCGACAGTTGCAACCGCGGCTTCCACATGACATGCCTCGTCCCT
CCCCTCGTCCGCCTCCCCCCGGGCACGTGGTTCTGCCCCCCGTGCACCAG
GCACGCCCACGCAGCACTGGACGATGGCACCGCAGATTCTCCAGAGGCAA
CAGAGCTG
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