mRNA_M-pyrifera_M_contig114294.2977.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114294.2977.1
Unique NamemRNA_M-pyrifera_M_contig114294.2977.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114294.2977.1 vs. uniprot
Match: A0A836CIZ1_9STRA (Utp13 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.430e-22
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 FHPDPKRLQLVSAGQDCTVRVWDLVTKSYVSPSLSHMSLVTSLAFINGGWDLVTAGRDKVMSVWDLRRFELKKTIPVFE 237
            FHPDP RL L SA +DCTVR+WDL  +S  +    HMS+   LAF   GW LVTAGRD+V+++W+LR F+L  T+PVFE
Sbjct:  234 FHPDPHRLLLASASEDCTVRLWDLTGQSCAAVLGDHMSVPRGLAFTPDGWTLVTAGRDQVLNIWNLRTFKLLSTVPVFE 312          
BLAST of mRNA_M-pyrifera_M_contig114294.2977.1 vs. uniprot
Match: A0A397BNS7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BNS7_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.730e-20
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 FHPDPKRLQLVSAGQDCTVRVWDLVTKSYVSPSLSHMSLVTSLAFINGGWDLVTAGRDKVMSVWDLRRFELKKTIPVFE 237
            FHPD KRLQLVSA  D TVRVWDLV +  V     HMS  T++AF N G+ L+++GRDKV++ WDLR+  L KT+   E
Sbjct:   34 FHPDAKRLQLVSASDDSTVRVWDLVAQKEVGCIKDHMSPATTVAFSNDGYTLLSSGRDKVINFWDLRKQVLVKTVLAHE 112          
BLAST of mRNA_M-pyrifera_M_contig114294.2977.1 vs. uniprot
Match: A0A485KX68_9STRA (Aste57867_13065 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KX68_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.820e-20
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 FHPDPKRLQLVSAGQDCTVRVWDLVTKSYVSPSLSHMSLVTSLAFINGGWDLVTAGRDKVMSVWDLRRFELKKTIPVFE 237
            FHPDPKRLQL SA  D TVRVWDLV +  V+    HMS  T++AF   G+ ++++GRDKV++VWDLR+ +L KT+   E
Sbjct:  161 FHPDPKRLQLASASDDSTVRVWDLVAQKEVACVKDHMSPATTIAFSTDGYTMLSSGRDKVVNVWDLRKQQLLKTVLTHE 239          
BLAST of mRNA_M-pyrifera_M_contig114294.2977.1 vs. uniprot
Match: A0A2D4BKG9_PYTIN (U3 small nucleolar RNA-associated protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKG9_PYTIN)

HSP 1 Score: 92.4 bits (228), Expect = 5.220e-20
Identity = 45/79 (56.96%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 FHPDPKRLQLVSAGQDCTVRVWDLVTKSYVSPSLSHMSLVTSLAFINGGWDLVTAGRDKVMSVWDLRRFELKKTIPVFE 237
            FHPDPKRL LVSA  D TVR+WDL  +S V+    HMS  TS+AF   G+ L+TAGRD+V++VWDLR   L++T+ V E
Sbjct:  171 FHPDPKRLLLVSASDDATVRLWDLYAQSEVACIQDHMSPATSVAFSADGYTLLTAGRDRVVNVWDLRDHVLRQTVVVHE 249          
BLAST of mRNA_M-pyrifera_M_contig114294.2977.1 vs. uniprot
Match: A0A2R6Q9I6_ACTCC (Transducin beta-like protein n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6Q9I6_ACTCC)

HSP 1 Score: 92.4 bits (228), Expect = 5.220e-20
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    1 FHPDPKRLQLVSAGQDCTVRVWDLVTKSYVSPSLSHMSLVTSLAFINGGWDLVTAGRDKVMSVWDLRRFELKKTIPVFEVCHLV 252
            FHPDP RL L S   D TVRVWDL TK  ++    H S VTSL+    GW L++AGRDKV+++WDL  +  K T+P +EV   V
Sbjct:  152 FHPDPNRLILFSGSDDTTVRVWDLGTKRCIATLEKHFSTVTSLSVSEDGWTLLSAGRDKVVNLWDLHDYGCKVTVPTYEVLEAV 235          
BLAST of mRNA_M-pyrifera_M_contig114294.2977.1 vs. uniprot
Match: A0A8K1CRP5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRP5_PYTOL)

HSP 1 Score: 91.3 bits (225), Expect = 1.330e-19
Identity = 42/79 (53.16%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 FHPDPKRLQLVSAGQDCTVRVWDLVTKSYVSPSLSHMSLVTSLAFINGGWDLVTAGRDKVMSVWDLRRFELKKTIPVFE 237
            FHPDPKRLQLVS   D TVRVWDL ++S ++    HM+  T +AF N G+ L++AGRD+V++ WDLR+  L++T+ V E
Sbjct:  168 FHPDPKRLQLVSCSDDATVRVWDLYSQSELACIQDHMNPATCVAFSNDGYTLLSAGRDRVVNFWDLRKNVLRQTVVVHE 246          
BLAST of mRNA_M-pyrifera_M_contig114294.2977.1 vs. uniprot
Match: A0A672PIJ7_SINGR (Transducin beta like 3 n=3 Tax=Cyprininae TaxID=2743694 RepID=A0A672PIJ7_SINGR)

HSP 1 Score: 90.9 bits (224), Expect = 1.640e-19
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 FHPDPKRLQLVSAGQDCTVRVWDLVTKSYVSPSLSHMSLVTSLAFINGGWDLVTAGRDKVMSVWDLRRFELKKTIPVFE 237
            FHPD  RLQL S+  DC +R+WDL T   +    SH S VTSLAF   G  LV++GRDK+ SVWDL++  +K+T+PV+E
Sbjct:   45 FHPDISRLQLFSSSVDCGIRIWDLRTSKCICVLESHYSAVTSLAFSPDGQTLVSSGRDKICSVWDLKKKAVKRTVPVYE 123          
BLAST of mRNA_M-pyrifera_M_contig114294.2977.1 vs. uniprot
Match: UPI000B8CB17D (transducin beta-like protein 3 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CB17D)

HSP 1 Score: 90.9 bits (224), Expect = 1.800e-19
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 FHPDPKRLQLVSAGQDCTVRVWDLVTKSYVSPSLSHMSLVTSLAFINGGWDLVTAGRDKVMSVWDLRRFELKKTIPVFEVCHLV 252
            FHPDP ++ L S   D T+RVWDL++K  ++    H S VT+LA    GW L++AGRDKV+++WDL  +  K TIP +E+   V
Sbjct:  153 FHPDPSKILLFSGSDDATIRVWDLLSKKCLATLERHFSTVTALAVSEDGWTLLSAGRDKVVNLWDLHDYVFKTTIPTYEIIEAV 236          
BLAST of mRNA_M-pyrifera_M_contig114294.2977.1 vs. uniprot
Match: A0A672PI55_SINGR (Transducin beta like 3 n=6 Tax=Sinocyclocheilus TaxID=75365 RepID=A0A672PI55_SINGR)

HSP 1 Score: 90.9 bits (224), Expect = 1.810e-19
Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    1 FHPDPKRLQLVSAGQDCTVRVWDLVTKSYVSPSLSHMSLVTSLAFINGGWDLVTAGRDKVMSVWDLRRFELKKTIPVFE 237
            FHPD  RLQL S+  DC +R+WDL T   +    SH S VTSLAF   G  LV++GRDK+ SVWDL++  +K+T+PV+E
Sbjct:  176 FHPDISRLQLFSSSVDCGIRIWDLRTSKCICVLESHYSAVTSLAFSPDGQTLVSSGRDKICSVWDLKKKAVKRTVPVYE 254          
BLAST of mRNA_M-pyrifera_M_contig114294.2977.1 vs. uniprot
Match: A0A2P2JNJ1_RHIMU (Uncharacterized protein MANES_09G127900 n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2JNJ1_RHIMU)

HSP 1 Score: 90.9 bits (224), Expect = 1.810e-19
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 FHPDPKRLQLVSAGQDCTVRVWDLVTKSYVSPSLSHMSLVTSLAFINGGWDLVTAGRDKVMSVWDLRRFELKKTIPVFEV 240
            FHPD  +  L S   D T+RVWDL+ K  VS    H S VTS+A    GW L+TAGRDKV+++WDL  +  K T+P +EV
Sbjct:  152 FHPDANKTFLFSGSDDATIRVWDLLAKKCVSTMEKHFSTVTSMAVSEDGWTLLTAGRDKVVNLWDLHSYSFKMTVPTYEV 231          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114294.2977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CIZ1_9STRA1.430e-2256.96Utp13 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A397BNS7_9STRA3.730e-2055.70Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A485KX68_9STRA3.820e-2054.43Aste57867_13065 protein n=1 Tax=Aphanomyces stella... [more]
A0A2D4BKG9_PYTIN5.220e-2056.96U3 small nucleolar RNA-associated protein, putativ... [more]
A0A2R6Q9I6_ACTCC5.220e-2051.19Transducin beta-like protein n=2 Tax=Actinidia Tax... [more]
A0A8K1CRP5_PYTOL1.330e-1953.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A672PIJ7_SINGR1.640e-1953.16Transducin beta like 3 n=3 Tax=Cyprininae TaxID=27... [more]
UPI000B8CB17D1.800e-1946.43transducin beta-like protein 3 n=1 Tax=Carica papa... [more]
A0A672PI55_SINGR1.810e-1953.16Transducin beta like 3 n=6 Tax=Sinocyclocheilus Ta... [more]
A0A2P2JNJ1_RHIMU1.810e-1950.00Uncharacterized protein MANES_09G127900 n=1 Tax=Rh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114294contigM-pyrifera_M_contig114294:63..366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score95.5
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog88036.EFJ24110
KEGG koko:K14555
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.Transducin beta-like protein
EggNOG OGs37PNA@33090,3GH8X@35493,KOG0319@1,KOG0319@2759
COG Functional cat.A
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.0680006-CDS-M-pyrifera_M_contig114294:62..1641622815659.0680006-CDS-M-pyrifera_M_contig114294:62..164Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114294 63..164 +
1692277508.9108453-CDS-M-pyrifera_M_contig114294:62..1641692277508.9108453-CDS-M-pyrifera_M_contig114294:62..164Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114294 63..164 +
1622815659.0793378-CDS-M-pyrifera_M_contig114294:216..3661622815659.0793378-CDS-M-pyrifera_M_contig114294:216..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114294 217..366 +
1692277508.924357-CDS-M-pyrifera_M_contig114294:216..3661692277508.924357-CDS-M-pyrifera_M_contig114294:216..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114294 217..366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114294.2977.1prot_M-pyrifera_M_contig114294.2977.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114294 63..366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114294.2977.1

>prot_M-pyrifera_M_contig114294.2977.1 ID=prot_M-pyrifera_M_contig114294.2977.1|Name=mRNA_M-pyrifera_M_contig114294.2977.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
FHPDPKRLQLVSAGQDCTVRVWDLVTKSYVSPSLSHMSLVTSLAFINGGW
DLVTAGRDKVMSVWDLRRFELKKTIPVFEVCHLV
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mRNA from alignment at M-pyrifera_M_contig114294:63..366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114294.2977.1 ID=mRNA_M-pyrifera_M_contig114294.2977.1|Name=mRNA_M-pyrifera_M_contig114294.2977.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=304bp|location=Sequence derived from alignment at M-pyrifera_M_contig114294:63..366+ (Macrocystis pyrifera P11B4 male)
TTTCACCCAGATCCGAAGCGCTTGCAGTTGGTCAGCGCTGGCCAGGACTG CACCGTTCGCGTGTGGGACCTCGTGACGAAGTCGTATGTCTCTCCCTCTC TCGTCAATCAAAGGCCAGAGCGCTGACGTCCGTAACAGGTGCAAGGTGCT GGAGAGCCACATGAGTCTCGTCACCTCCCTGGCGTTCATCAACGGCGGAT GGGACCTCGTCACGGCAGGACGCGACAAGGTGATGTCGGTGTGGGACCTG AGAAGGTTCGAGCTCAAGAAGACCATTCCCGTGTTTGAGGTATGTCATCT CGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114294:63..366+

>mRNA_M-pyrifera_M_contig114294.2977.1 ID=mRNA_M-pyrifera_M_contig114294.2977.1|Name=mRNA_M-pyrifera_M_contig114294.2977.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig114294:63..366+ (Macrocystis pyrifera P11B4 male)
TTTCACCCAGATCCGAAGCGCTTGCAGTTGGTCAGCGCTGGCCAGGACTG
CACCGTTCGCGTGTGGGACCTCGTGACGAAGTCGTATGTCTCTCCCTCTC
TCTTTCACCCAGATCCGAAGCGCTTGCAGTTGGTCAGCGCTGGCCAGGAC
TGCACCGTTCGCGTGTGGGACCTCGTGACGAAGTCGTATGTCTCTCCCTC
TCTCAGCCACATGAGTCTCGTCACCTCCCTGGCGTTCATCAACGGCGGAT
GGGACCTCGTCACGGCAGGACGCGACAAGGTGATGTCGGTGTGGGACCTG
AGAAGGTTCGAGCTCAAGAAGACCATTCCCGTGTTTGAGGTATGTCATCT
CGTGAGCCACATGAGTCTCGTCACCTCCCTGGCGTTCATCAACGGCGGAT
GGGACCTCGTCACGGCAGGACGCGACAAGGTGATGTCGGTGTGGGACCTG
AGAAGGTTCGAGCTCAAGAAGACCATTCCCGTGTTTGAGGTATGTCATCT
CGTG
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