mRNA_M-pyrifera_M_contig114235.2971.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114235.2971.1
Unique NamemRNA_M-pyrifera_M_contig114235.2971.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114235.2971.1 vs. uniprot
Match: A0A507DEA3_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DEA3_9FUNG)

HSP 1 Score: 97.1 bits (240), Expect = 2.320e-22
Identity = 63/136 (46.32%), Postives = 93/136 (68.38%), Query Frame = 1
Query:    4 IERSEAKVKRDLKAAAKRKDKTTCTIHAKTLVHSKKSKERMLLTKATINSAVSQIQTLSSMARMSEVMGKSGELMSTMNKLLNAPAVGGAVRTLAMEMEKAGVIEEVMADAVD--DAMGMDEEDEXXXXEEVERVL 405
            I+  EAKVKRD+KAAAKR DKT+C   AK +V+++K+KERM  +KA +NS + Q+Q   +M +++  + KS ELM  +NKL+  P +   ++ +  EM KAG+IEE+M DA+D  D  G+D+E E    E V++VL
Sbjct:   40 IDSEEAKVKRDIKAAAKRGDKTSCMTLAKEVVNARKAKERMYTSKAQMNSIIMQLQQQVAMIKVAGNIQKSAELMKLVNKLIKVPEMSKNMQEMQREMMKAGIIEEMMNDAIDMADDEGIDDESE----EIVDKVL 171          
BLAST of mRNA_M-pyrifera_M_contig114235.2971.1 vs. uniprot
Match: A0A6A4XC06_AMPAM (Charged multivesicular body protein 3 n=3 Tax=Thoracicalcarea TaxID=2899756 RepID=A0A6A4XC06_AMPAM)

HSP 1 Score: 91.7 bits (226), Expect = 2.920e-20
Identity = 57/137 (41.61%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    4 IERSEAKVKRDLKAAAKRKDKTTCTIHAKTLVHSKKSKERMLLTKATINSAVSQIQTLSSMARMSEVMGKSGELMSTMNKLLNAPAVGGAVRTLAMEMEKAGVIEEVMADAVDDAMGMDEEDEXXXX--EEVERVLW 408
            I+R E KVKR LK AAK+ D++ CT+ AK +VHS+K+  R+  TKA INS   Q++   +  R++  M +S E+M  M +L+  P V   ++ ++ EM KAG++EE+M D  +   G+D++DE      EEV++VLW
Sbjct:   37 IQREEEKVKRSLKEAAKKGDRSVCTVLAKEVVHSRKAISRIYTTKAQINSVSLQMKQQLAQIRVAGAMSQSTEVMQAMQQLVKVPEVAKTMQDMSKEMMKAGILEEMMEDTFE---GLDDQDELEEAAQEEVDKVLW 170          
BLAST of mRNA_M-pyrifera_M_contig114235.2971.1 vs. uniprot
Match: UPI0002659044 (charged multivesicular body protein 3 n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002659044)

HSP 1 Score: 86.7 bits (213), Expect = 2.230e-18
Identity = 55/135 (40.74%), Postives = 85/135 (62.96%), Query Frame = 1
Query:    4 IERSEAKVKRDLKAAAKRKDKTTCTIHAKTLVHSKKSKERMLLTKATINSAVSQIQTLSSMARMSEVMGKSGELMSTMNKLLNAPAVGGAVRTLAMEMEKAGVIEEVMADAVDDAMGMDEEDEXXXXEEVERVLW 408
            I+R E K+KR LK AAK+ D+  C I+AK +V S+K+  R+  +KA INS +  I    +  R++  + KS E+M +M  L+  P V   ++ L+ EM KAGVIEE+M D +D+ +  +EE E    EE+++VL+
Sbjct:   35 IQREEEKIKRSLKEAAKKGDRDVCLIYAKEIVRSRKAVSRVCASKAQINSVMLGINHQLASLRVAGSIQKSTEVMKSMQALVKVPEVAQTMQELSREMMKAGVIEEMMEDTMDEILDNNEELEEQAQEEIDKVLF 169          
BLAST of mRNA_M-pyrifera_M_contig114235.2971.1 vs. uniprot
Match: A0A7S3DDW7_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DDW7_9EUKA)

HSP 1 Score: 86.7 bits (213), Expect = 2.610e-18
Identity = 55/135 (40.74%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    1 EIERSEAKVKRDLKAAAKRKDKTTCTIHAKTLVHSKKSKERMLLTKATINSAVSQIQTLSSMARMSEVMGKSGELMSTMNKLLNAPAVGGAVRTLAMEMEKAGVIEEVMADAVDDAMGMDEEDEXXXXEEVERVL 405
            +IER+E K+KR+++  AKR DK + TI AK +V S+ +K RM   KA +NS   +IQ   +  +++  M  SG +M +MN LL  P +  ++R ++ EM KAG++EE+M DA++   G D E+E    EE ++VL
Sbjct:   38 DIERAEEKIKREIRTLAKRNDKASMTILAKEMVRSRHAKSRMYSAKAHMNSVQMKIQEQMAQVKVAGAMQASGAVMQSMNALLRLPEIQASMRQMSKEMMKAGIMEEMMDDAMEGLDGEDVEEEAE--EETQKVL 170          
BLAST of mRNA_M-pyrifera_M_contig114235.2971.1 vs. uniprot
Match: A0A433PQA2_9FUNG (Vacuolar sorting protein VPS24 n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PQA2_9FUNG)

HSP 1 Score: 86.3 bits (212), Expect = 3.750e-18
Identity = 56/136 (41.18%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    4 IERSEAKVKRDLKAAAKRKDKTTCTIHAKTLVHSKKSKERMLLTKATINSAVSQIQTLSSMARMSEVMGKSGELMSTMNKLLNAPAVGGAVRTLAMEMEKAGVIEEVMADAVDDAMGMDEED-EXXXXEEVERVLW 408
            IE  E KVK+ LKA AKR DK  C   AK LV SK+ KER+  +KA +NS V Q+    S  +++ V+ KS E+M  +N+++  P +  A++ ++MEM KAG+++E++ D ++    +D+ED E    EEV +VL+
Sbjct:   42 IEGEELKVKKSLKALAKRGDKKACMTLAKELVRSKRHKERLYTSKAQLNSIVMQLNNQLSTLKIAGVLQKSSEIMKLVNQVVRLPEISQAMQEMSMEMMKAGIMDEMIQDTME---SLDDEDLEAEADEEVNKVLF 174          
BLAST of mRNA_M-pyrifera_M_contig114235.2971.1 vs. uniprot
Match: A0A1Y1Z736_9FUNG (Charged multivesicular body protein 3 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z736_9FUNG)

HSP 1 Score: 85.9 bits (211), Expect = 4.310e-18
Identity = 54/135 (40.00%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    4 IERSEAKVKRDLKAAAKRKDKTTCTIHAKTLVHSKKSKERMLLTKATINSAVSQIQTLSSMARMSEVMGKSGELMSTMNKLLNAPAVGGAVRTLAMEMEKAGVIEEVMADAVDDAMGMDEEDEXXXXEEVERVLW 408
            IE  E K+KR +K  AK+KD T C + AK LV S+K K+R+  +KA +NS + Q+Q   +  +++  + KS E+M+ +N+L+  P +   + T+AMEM KAG++EE++ D +D     DE+ E    EEV +VL+
Sbjct:   37 IESEEVKIKRSMKQLAKKKDITNCKMLAKELVRSRKQKDRIHTSKAQLNSILMQLQQQLATLKVAGSLQKSTEVMTLVNRLVKLPEISQTMETMAMEMTKAGIMEEMIGDTLD--AFEDEDIEEEADEEVNKVLF 169          
BLAST of mRNA_M-pyrifera_M_contig114235.2971.1 vs. uniprot
Match: A0A1Y2CQ12_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CQ12_9FUNG)

HSP 1 Score: 85.1 bits (209), Expect = 5.020e-18
Identity = 53/137 (38.69%), Postives = 92/137 (67.15%), Query Frame = 1
Query:    4 IERSEAKVKRDLKAAAKRKDKTTCTIHAKTLVHSKKSKERMLLTKATINSAVSQIQTLSSMARMSEVMGKSGELMSTMNKLLNAPAVGGAVRTLAMEMEKAGVIEEVMADAVD--DAMGMDEEDEXXXXEEVERVLW 408
            IE +EAKVK+D+KAAAKR D  +C + AK +V S+K+++R+  +KA +NS   Q+Q   ++A+++  + +S ++M  +N L+  P +   ++ ++ EM KAG+I E+M DA+D  D  G++EE +    +EVE +L+
Sbjct:   32 IETAEAKVKKDIKAAAKRNDAASCRLLAKEIVRSRKARDRLHTSKAQLNSLSMQLQQQLAVAKVAGSLKQSTDIMKIVNNLIKLPEIHNTMQEMSKEMMKAGIIGEMMEDAIDTLDEEGIEEEAD----KEVENILF 164          
BLAST of mRNA_M-pyrifera_M_contig114235.2971.1 vs. uniprot
Match: A0A433D452_9FUNG (Snf7 family n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D452_9FUNG)

HSP 1 Score: 85.9 bits (211), Expect = 5.160e-18
Identity = 57/135 (42.22%), Postives = 89/135 (65.93%), Query Frame = 1
Query:    4 IERSEAKVKRDLKAAAKRKDKTTCTIHAKTLVHSKKSKERMLLTKATINSAVSQIQTLSSMARMSEVMGKSGELMSTMNKLLNAPAVGGAVRTLAMEMEKAGVIEEVMADAVDDAMGMDEEDEXXXXEEVERVLW 408
            IE  EA+VK+ LKA AKR DK  CT  AK LV SKK KER+  +KA +NS V Q+    +  +++  + KS E+M  +N+++  P +  A++ ++MEM KAG+++E++ D++D A+  D+E E    EEV +VL+
Sbjct:   42 IEGEEARVKKSLKALAKRGDKKDCTTLAKELVRSKKHKERIHTSKAQLNSIVMQLNHQLATLKIAGTLQKSSEIMKLVNQVVRLPEISQAMQEMSMEMMKAGIMDEMLQDSMD-ALD-DDELEEEAEEEVNKVLF 174          
BLAST of mRNA_M-pyrifera_M_contig114235.2971.1 vs. uniprot
Match: C4WY68_ACYPI (ACYPI001542 protein n=12 Tax=Aphididae TaxID=27482 RepID=C4WY68_ACYPI)

HSP 1 Score: 85.5 bits (210), Expect = 7.110e-18
Identity = 51/135 (37.78%), Postives = 85/135 (62.96%), Query Frame = 1
Query:    4 IERSEAKVKRDLKAAAKRKDKTTCTIHAKTLVHSKKSKERMLLTKATINSAVSQIQTLSSMARMSEVMGKSGELMSTMNKLLNAPAVGGAVRTLAMEMEKAGVIEEVMADAVDDAMGMDEEDEXXXXEEVERVLW 408
            I+R E KVKR +K AAK+ +K  C I AK ++ S+K+  +++ +K  ++S   Q++   S+ RM+  + KS E+M TM+ L+  P V   +R L+ EM KAG+IEE++ D +++ M   E+ E     E+++VLW
Sbjct:   37 IQREEEKVKRSMKEAAKKGNKDVCIILAKEILRSRKTINKLITSKTHMSSIQMQMKNQLSILRMAGSLQKSTEVMQTMHNLIKVPEVAATMRDLSKEMMKAGIIEEMLDDTMENVMDDPEDMEEEAQSEIDKVLW 171          
BLAST of mRNA_M-pyrifera_M_contig114235.2971.1 vs. uniprot
Match: A0A7J7IVU2_BUGNE (Vps24 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7IVU2_BUGNE)

HSP 1 Score: 83.2 bits (204), Expect = 5.360e-17
Identity = 53/136 (38.97%), Postives = 86/136 (63.24%), Query Frame = 1
Query:    1 EIERSEAKVKRDLKAAAKRKDKTTCTIHAKTLVHSKKSKERMLLTKATINSAVSQIQTLSSMARMSEVMGKSGELMSTMNKLLNAPAVGGAVRTLAMEMEKAGVIEEVMADAVDDAMGMDEEDEXXXXEEVERVLW 408
            +I+R E KVKR LK AAK+     C + AK +V+S+K++ ++   KA +NS   Q++   ++ R+S  +  S  +MS+M +LL    V   +R L+ EM KAG+IEE++ D ++DA+G D+E E     EV++VL+
Sbjct:   36 QIKREEEKVKRSLKDAAKKGHTDVCKVLAKEIVNSRKAQNKLHAAKAHMNSVQMQMKNQLAVLRISGALEASTAVMSSMQQLLKIEDVSATMRELSQEMTKAGIIEEMVEDTLEDALGDDDELEEDVQNEVDKVLF 171          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114235.2971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A507DEA3_9FUNG2.320e-2246.32Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
A0A6A4XC06_AMPAM2.920e-2041.61Charged multivesicular body protein 3 n=3 Tax=Thor... [more]
UPI00026590442.230e-1840.74charged multivesicular body protein 3 n=1 Tax=Gale... [more]
A0A7S3DDW7_9EUKA2.610e-1840.74Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A433PQA2_9FUNG3.750e-1841.18Vacuolar sorting protein VPS24 n=1 Tax=Endogone sp... [more]
A0A1Y1Z736_9FUNG4.310e-1840.00Charged multivesicular body protein 3 n=1 Tax=Basi... [more]
A0A1Y2CQ12_9FUNG5.020e-1838.69Uncharacterized protein (Fragment) n=1 Tax=Rhizocl... [more]
A0A433D452_9FUNG5.160e-1842.22Snf7 family n=1 Tax=Jimgerdemannia flammicorona Ta... [more]
C4WY68_ACYPI7.110e-1837.78ACYPI001542 protein n=12 Tax=Aphididae TaxID=27482... [more]
A0A7J7IVU2_BUGNE5.360e-1738.97Vps24 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114235contigM-pyrifera_M_contig114235:1..408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score89.0
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog7070.TC012251-PA
Preferred nameVps24
KEGG koko:K12193
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
GOsGO:0000815,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006810,GO:0006900,GO:0006996,GO:0007032,GO:0008150,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0036452,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0061024,GO:0070676,GO:0071840,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.Belongs to the SNF7 family
EggNOG OGs39V59@33154,3B9JI@33208,3CXX1@33213,3SI3U@50557,41U4Y@6656,COG5491@1,KOG3229@2759
COG Functional cat.U
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.6098073-CDS-M-pyrifera_M_contig114235:0..4081622815658.6098073-CDS-M-pyrifera_M_contig114235:0..408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114235 1..408 -
1692277508.676586-CDS-M-pyrifera_M_contig114235:0..4081692277508.676586-CDS-M-pyrifera_M_contig114235:0..408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114235 1..408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114235.2971.1prot_M-pyrifera_M_contig114235.2971.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114235 1..408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114235.2971.1

>prot_M-pyrifera_M_contig114235.2971.1 ID=prot_M-pyrifera_M_contig114235.2971.1|Name=mRNA_M-pyrifera_M_contig114235.2971.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
EIERSEAKVKRDLKAAAKRKDKTTCTIHAKTLVHSKKSKERMLLTKATIN
SAVSQIQTLSSMARMSEVMGKSGELMSTMNKLLNAPAVGGAVRTLAMEME
KAGVIEEVMADAVDDAMGMDEEDEEEAEEEVERVLW
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mRNA from alignment at M-pyrifera_M_contig114235:1..408-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114235.2971.1 ID=mRNA_M-pyrifera_M_contig114235.2971.1|Name=mRNA_M-pyrifera_M_contig114235.2971.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig114235:1..408- (Macrocystis pyrifera P11B4 male)
GAGATCGAGCGCAGCGAGGCGAAGGTGAAGCGGGATTTGAAGGCAGCGGC GAAGCGCAAGGACAAGACGACTTGCACGATCCACGCCAAGACTCTGGTGC ATTCGAAGAAGAGCAAGGAGCGGATGCTGCTGACCAAGGCGACGATCAAC AGCGCTGTGAGCCAGATCCAGACGCTGTCGTCAATGGCCCGCATGTCAGA GGTGATGGGCAAGAGCGGAGAATTGATGTCCACGATGAACAAGTTGCTCA ATGCCCCTGCTGTCGGGGGAGCAGTGCGTACATTGGCGATGGAGATGGAG AAGGCTGGCGTGATCGAGGAGGTGATGGCTGACGCCGTCGACGATGCGAT GGGGATGGACGAGGAGGACGAGGAGGAGGCGGAGGAGGAGGTAGAGAGGG TGTTGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114235:1..408-

>mRNA_M-pyrifera_M_contig114235.2971.1 ID=mRNA_M-pyrifera_M_contig114235.2971.1|Name=mRNA_M-pyrifera_M_contig114235.2971.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig114235:1..408- (Macrocystis pyrifera P11B4 male)
GAGATCGAGCGCAGCGAGGCGAAGGTGAAGCGGGATTTGAAGGCAGCGGC
GAAGCGCAAGGACAAGACGACTTGCACGATCCACGCCAAGACTCTGGTGC
ATTCGAAGAAGAGCAAGGAGCGGATGCTGCTGACCAAGGCGACGATCAAC
AGCGCTGTGAGCCAGATCCAGACGCTGTCGTCAATGGCCCGCATGTCAGA
GGTGATGGGCAAGAGCGGAGAATTGATGTCCACGATGAACAAGTTGCTCA
ATGCCCCTGCTGTCGGGGGAGCAGTGCGTACATTGGCGATGGAGATGGAG
AAGGCTGGCGTGATCGAGGAGGTGATGGCTGACGCCGTCGACGATGCGAT
GGGGATGGACGAGGAGGACGAGGAGGAGGCGGAGGAGGAGGTAGAGAGGG
TGTTGTGGGAGATCGAGCGCAGCGAGGCGAAGGTGAAGCGGGATTTGAAG
GCAGCGGCGAAGCGCAAGGACAAGACGACTTGCACGATCCACGCCAAGAC
TCTGGTGCATTCGAAGAAGAGCAAGGAGCGGATGCTGCTGACCAAGGCGA
CGATCAACAGCGCTGTGAGCCAGATCCAGACGCTGTCGTCAATGGCCCGC
ATGTCAGAGGTGATGGGCAAGAGCGGAGAATTGATGTCCACGATGAACAA
GTTGCTCAATGCCCCTGCTGTCGGGGGAGCAGTGCGTACATTGGCGATGG
AGATGGAGAAGGCTGGCGTGATCGAGGAGGTGATGGCTGACGCCGTCGAC
GATGCGATGGGGATGGACGAGGAGGACGAGGAGGAGGCGGAGGAGGAGGT
AGAGAGGGTGTTGTGG
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