mRNA_M-pyrifera_M_contig114233.2970.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114233.2970.1
Unique NamemRNA_M-pyrifera_M_contig114233.2970.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114233.2970.1 vs. uniprot
Match: A0A163JAV7_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163JAV7_ABSGL)

HSP 1 Score: 58.2 bits (139), Expect = 5.460e-8
Identity = 32/88 (36.36%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    4 ANIKGEMVVRMEGEIDALVELSMMIELLVARADLIRESKSCPEDLLEMCHTLIWVSGK-QPLKELKEVKKQLGLKFGKEFVAAAVQES 264
            A I+ E ++R +  ++A+  L +  +LL+AR  L+ + K C   + E  +T+IW + +   +KEL  V+ QLG KFGKEF+ AA++ +
Sbjct:   48 ARIRVEHIIREDLVMEAMEILELYCDLLLARFGLLEQYKECDAGIAEAVNTIIWAAARTSEVKELSSVRDQLGAKFGKEFLLAAMENT 135          
BLAST of mRNA_M-pyrifera_M_contig114233.2970.1 vs. uniprot
Match: A0A1Y2GCV8_9FUNG (Regulator of Vps4 activity in the MVB pathway-domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GCV8_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 1.040e-7
Identity = 31/85 (36.47%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    4 ANIKGEMVVRMEGEIDALVELSMMIELLVARADLIRESKSCPEDLLEMCHTLIWVSGKQPLKELKEVKKQLGLKFGKEFVAAAVQ 258
            A I+ E ++R +   +AL  + +  ELL+AR  L+ + K+C   +LE  +T+I+ + +  +KEL +V+ QL  KFG++FVA A++
Sbjct:   48 ARIRVEHIIREDFNTEALEIIELYCELLLARFGLLEQMKTCDPAILEAVNTIIYAAPRSEVKELLQVRDQLTAKFGRDFVANAME 132          
BLAST of mRNA_M-pyrifera_M_contig114233.2970.1 vs. uniprot
Match: A0A1X2IQT5_9FUNG (Regulator of Vps4 activity in the MVB pathway-domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IQT5_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 1.840e-7
Identity = 32/88 (36.36%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    4 ANIKGEMVVRMEGEIDALVELSMMIELLVARADLIRESKSCPEDLLEMCHTLIWVSGKQ-PLKELKEVKKQLGLKFGKEFVAAAVQES 264
            A I+ E ++R +  ++A+  L +  +LL+AR  L+ + K C   + E  +T+IW + +   +KEL  V+ QLG KFGKEF+ AA++ +
Sbjct:   48 ARIRVEHIIREDLLMEAMEILELYCDLLLARFGLLEQYKECDPGIAEAVNTIIWAAARTGEVKELSSVRDQLGSKFGKEFLLAAMENT 135          
BLAST of mRNA_M-pyrifera_M_contig114233.2970.1 vs. uniprot
Match: A0A4Z0YY98_9PEZI (Uncharacterized protein n=2 Tax=Xylaria TaxID=37991 RepID=A0A4Z0YY98_9PEZI)

HSP 1 Score: 56.2 bits (134), Expect = 2.720e-7
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 1
Query:    4 ANIKGEMVVRMEGEIDALVELSMMIELLVARADLIRESKSCPEDLLEMCHTLIWVSGKQPLKELKEVKKQLGLKFGKEFVAAAVQESG 267
            A I+ E ++R +   +    L +  ELL+ARA L+ ES +C   L E   ++I+ + +  +KEL++V+  LG +FGKEFV AAV+ SG
Sbjct:   52 ARIRTENIIRSDINTELHEILELYCELLLARASLL-ESPTCDPGLEEAVKSIIYAAPRTEIKELQQVRALLGERFGKEFVLAAVENSG 138          
BLAST of mRNA_M-pyrifera_M_contig114233.2970.1 vs. uniprot
Match: A0A507F307_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507F307_9FUNG)

HSP 1 Score: 55.1 bits (131), Expect = 6.420e-7
Identity = 30/87 (34.48%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    4 ANIKGEMVVRMEGEIDALVELSMMIELLVARADLIRESKSCPEDLLEMCHTLIWVSGKQPLKELKEVKKQLGLKFGKEFVAAAVQES 264
            A ++ E+V+R +  ++AL  + +  ELL+AR  L+   + C   + E  +T+I+ + +  + EL+ +K QL LKFGK+F  AA++ S
Sbjct:   49 ARVRVELVIREDCAVEALEIVELYCELLLARFGLLEMMRVCDPAIEEAVNTVIYAAARLDVLELRVIKDQLSLKFGKDFAMAALENS 135          
BLAST of mRNA_M-pyrifera_M_contig114233.2970.1 vs. uniprot
Match: A0A443NHY7_9MAGN (Filaggrin isoform X2 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NHY7_9MAGN)

HSP 1 Score: 55.1 bits (131), Expect = 8.770e-7
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    4 ANIKGEMVVRMEGEIDALVELSMMIELLVARADLIRESKSCPEDLLEMCHTLIWVSGK-QPLKELKEVKKQLGLKFGKEFVAAAVQ 258
            A I+ E VVR E  + A   + +  EL+VAR  +I   K+CP DL E   +LI+ S +   + EL++V+KQ   K+GKEFVA+A++
Sbjct:   52 ARIRVEHVVREEKTMAAYDIVEVYCELIVARLHIIESQKNCPIDLKEPIASLIFASPRCADIPELQDVRKQFTKKYGKEFVASALE 137          
BLAST of mRNA_M-pyrifera_M_contig114233.2970.1 vs. uniprot
Match: UPI001CF9A60C (uncharacterized protein LOC123194697 isoform X1 n=2 Tax=Mangifera indica TaxID=29780 RepID=UPI001CF9A60C)

HSP 1 Score: 54.3 bits (129), Expect = 1.630e-6
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    4 ANIKGEMVVRMEGEIDALVELSMMIELLVARADLIRESKSCPEDLLEMCHTLIWVSGK-QPLKELKEVKKQLGLKFGKEFVAAAVQ 258
            A I+ E VVR E  + A   L +  EL+VAR  +I   K+CP DL E   ++I+ S +   + EL +V+K    K+GKEFVA AV+
Sbjct:   52 ARIRVEHVVREEKTMAAYDLLEIYCELIVARLPIIESQKNCPIDLNEAISSIIFASPRCADIPELMDVRKHFTAKYGKEFVATAVE 137          
BLAST of mRNA_M-pyrifera_M_contig114233.2970.1 vs. uniprot
Match: A0A022RPA0_ERYGU (Uncharacterized protein n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RPA0_ERYGU)

HSP 1 Score: 54.3 bits (129), Expect = 1.630e-6
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    4 ANIKGEMVVRMEGEIDALVELSMMIELLVARADLIRESKSCPEDLLEMCHTLIWVSGK-QPLKELKEVKKQLGLKFGKEFVAAAVQ 258
            A I+ E V+R E  + A   L +  EL+VAR  +I   K+CP DL E   +L++ S +   + EL +V+KQL +K+GK+F  AA++
Sbjct:   63 ARIRVEHVIREEKMMAAYDLLEIYCELVVARLPIIESQKNCPIDLKEAIASLVFASPRCGDVPELLDVRKQLSVKYGKDFTTAAIE 148          
BLAST of mRNA_M-pyrifera_M_contig114233.2970.1 vs. uniprot
Match: A0A367JGP1_RHIAZ (Vacuolar protein sorting-associated protein ist1 n=3 Tax=Rhizopus TaxID=4842 RepID=A0A367JGP1_RHIAZ)

HSP 1 Score: 53.9 bits (128), Expect = 1.640e-6
Identity = 32/86 (37.21%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    4 ANIKGEMVVRMEGEIDALVELSMMIELLVARADLIRESKSCPEDLLEMCHTLIWVSGK-QPLKELKEVKKQLGLKFGKEFVAAAVQ 258
            A ++ E V+R +  I+A+  L +  +LL+AR  L+   K+C   + E  HT+IW + +   +KEL  V+ QL  KFGKEF+  A++
Sbjct:   48 ARVRIEHVIRDDFVIEAMENLELYCDLLLARFGLLETYKTCEASIEEAVHTVIWAAPRLSEVKELSLVRDQLASKFGKEFMIDAME 133          
BLAST of mRNA_M-pyrifera_M_contig114233.2970.1 vs. uniprot
Match: A0A0K9NNC1_ZOSMR (Uncharacterized protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NNC1_ZOSMR)

HSP 1 Score: 53.9 bits (128), Expect = 2.220e-6
Identity = 30/85 (35.29%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    4 ANIKGEMVVRMEGEIDALVELSMMIELLVARADLIRESKSCPEDLLEMCHTLIWVSGKQPLKELKEVKKQLGLKFGKEFVAAAVQ 258
            A I+ E ++R E  +     + +  +L+VAR  +I   K+CP DL E   ++I+ S +  + EL E +KQ   K+GK+FVA+A++
Sbjct:  108 ARIRVEHIIREENFMATYDLIEVYCQLIVARMQIIETQKNCPLDLKEAISSVIFASQRCDIDELSEARKQFQAKYGKDFVASALE 192          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114233.2970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A163JAV7_ABSGL5.460e-836.36Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
A0A1Y2GCV8_9FUNG1.040e-736.47Regulator of Vps4 activity in the MVB pathway-doma... [more]
A0A1X2IQT5_9FUNG1.840e-736.36Regulator of Vps4 activity in the MVB pathway-doma... [more]
A0A4Z0YY98_9PEZI2.720e-739.77Uncharacterized protein n=2 Tax=Xylaria TaxID=3799... [more]
A0A507F307_9FUNG6.420e-734.48Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
A0A443NHY7_9MAGN8.770e-741.86Filaggrin isoform X2 n=1 Tax=Cinnamomum micranthum... [more]
UPI001CF9A60C1.630e-641.86uncharacterized protein LOC123194697 isoform X1 n=... [more]
A0A022RPA0_ERYGU1.630e-639.53Uncharacterized protein n=2 Tax=Erythranthe guttat... [more]
A0A367JGP1_RHIAZ1.640e-637.21Vacuolar protein sorting-associated protein ist1 n... [more]
A0A0K9NNC1_ZOSMR2.220e-635.29Uncharacterized protein n=1 Tax=Zostera marina Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114233contigM-pyrifera_M_contig114233:206..472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue4.3e-07
Seed eggNOG ortholog112098.XP_008605099.1
Preferred nameIST1
KEGG koko:K19476
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006810,GO:0007034,GO:0008150,GO:0012505,GO:0016192,GO:0016197,GO:0031410,GO:0031982,GO:0032509,GO:0032511,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0071985,GO:0097708
EggNOG free text desc.viral capsid secondary envelopment
EggNOG OGsKOG2027@1,KOG2027@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size267
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.5557907-CDS-M-pyrifera_M_contig114233:205..4511622815658.5557907-CDS-M-pyrifera_M_contig114233:205..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114233 206..451 -
1692277508.6508467-CDS-M-pyrifera_M_contig114233:205..4511692277508.6508467-CDS-M-pyrifera_M_contig114233:205..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114233 206..451 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.571527-UTR-M-pyrifera_M_contig114233:451..4721622815658.571527-UTR-M-pyrifera_M_contig114233:451..472Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114233 452..472 -
1692277508.6660209-UTR-M-pyrifera_M_contig114233:451..4721692277508.6660209-UTR-M-pyrifera_M_contig114233:451..472Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114233 452..472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114233.2970.1prot_M-pyrifera_M_contig114233.2970.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114233 206..451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114233.2970.1

>prot_M-pyrifera_M_contig114233.2970.1 ID=prot_M-pyrifera_M_contig114233.2970.1|Name=mRNA_M-pyrifera_M_contig114233.2970.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MVVRMEGEIDALVELSMMIELLVARADLIRESKSCPEDLLEMCHTLIWVS
GKQPLKELKEVKKQLGLKFGKEFVAAAVQESG
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mRNA from alignment at M-pyrifera_M_contig114233:206..472-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114233.2970.1 ID=mRNA_M-pyrifera_M_contig114233.2970.1|Name=mRNA_M-pyrifera_M_contig114233.2970.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig114233:206..472- (Macrocystis pyrifera P11B4 male)
CAGGCGAATATCAAGGGTGAGATGGTGGTTCGGATGGAGGGTGAGATTGA CGCATTGGTGGAGTTGAGCATGATGATCGAGTTGTTGGTTGCTCGCGCCG ACCTGATTCGGGAGAGCAAGTCTTGCCCCGAGGACTTGCTGGAGATGTGC CACACTCTGATTTGGGTGAGTGGCAAGCAGCCGCTCAAGGAGCTCAAGGA GGTGAAGAAGCAGCTGGGTCTGAAATTCGGCAAGGAATTCGTGGCAGCGG CTGTGCAGGAGAGTGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114233:206..472-

>mRNA_M-pyrifera_M_contig114233.2970.1 ID=mRNA_M-pyrifera_M_contig114233.2970.1|Name=mRNA_M-pyrifera_M_contig114233.2970.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig114233:206..472- (Macrocystis pyrifera P11B4 male)
ATGGTGGTTCGGATGGAGGGTGAGATTGACGCATTGGTGGAGTTGAGCAT
GATGATCGAGTTGTTGGTTGCTCGCGCCGACCTGATTCGGGAGAGCAAGT
CTTGCCCCGAGGACTTGCTGGAGATGTGCCACACTCTGATTTGGGTGAGT
GGCAAGCAGCCGCTCAAGGAGCTCAAGGAGGTGAAGAAGCAGCTGGGTCT
GAAATTCGGCAAGGAATTCGTGGCAGCGGCTGTGCAGGAGAGTGGGATGG
TGGTTCGGATGGAGGGTGAGATTGACGCATTGGTGGAGTTGAGCATGATG
ATCGAGTTGTTGGTTGCTCGCGCCGACCTGATTCGGGAGAGCAAGTCTTG
CCCCGAGGACTTGCTGGAGATGTGCCACACTCTGATTTGGGTGAGTGGCA
AGCAGCCGCTCAAGGAGCTCAAGGAGGTGAAGAAGCAGCTGGGTCTGAAA
TTCGGCAAGGAATTCGTGGCAGCGGCTGTGCAGGAGAGTGGG
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