mRNA_M-pyrifera_M_contig11422.2966.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11422.2966.1
Unique NamemRNA_M-pyrifera_M_contig11422.2966.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11422.2966.1 vs. uniprot
Match: D7G400_ECTSI (CCT-eta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G400_ECTSI)

HSP 1 Score: 379 bits (974), Expect = 5.820e-127
Identity = 199/224 (88.84%), Postives = 205/224 (91.52%), Query Frame = 1 
Query:    1 MSYMNQPGIILLREGTDSSQGKAQLVSNINACQAVMDTVRSTLGPRGMDKLIFDGQKVTISNDGATIMKLLDIAHPAAKTLVDISMSQDAEARLRLKIGKKTTVGDGTTSVVLLAGEILKHIKGFVEDGLHPQVICRGLRKACEVAVARLDAVSVKPVDDEQAREVLIKCAGTALNSKLISSQKDLFAPMVVEAISNLDQQLLDLSLVDEKKVAGGSVTASFLV 672
            MSYMNQPGIILLREGTDSSQGKAQLVSNINACQAVMDTVRSTLGPRGMDKLIFDGQKVTISNDGATIMKLLDIAHPAAKTLVDISMSQDAE            VGDGTTSVVLLAGEILKH+KGFVEDGLHPQVICRGLRKACEVAV RLDAVSVKP DD QA++VLI+CAGTALNSKLISSQKDLFAPMVVEA+SNLDQQLLDLSL+  KKV GGSVT SFLV
Sbjct:    1 MSYMNQPGIILLREGTDSSQGKAQLVSNINACQAVMDTVRSTLGPRGMDKLIFDGQKVTISNDGATIMKLLDIAHPAAKTLVDISMSQDAE------------VGDGTTSVVLLAGEILKHVKGFVEDGLHPQVICRGLRKACEVAVGRLDAVSVKPTDDAQAKDVLIRCAGTALNSKLISSQKDLFAPMVVEAVSNLDQQLLDLSLIGVKKVGGGSVTDSFLV 212
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BLAST of mRNA_M-pyrifera_M_contig11422.2966.1 vs. uniprot
Match: A0A836CEV1_9STRA (T-complex protein 1 subunit eta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEV1_9STRA)

HSP 1 Score: 317 bits (813), Expect = 1.060e-102
Identity = 165/224 (73.66%), Postives = 191/224 (85.27%), Query Frame = 1 
Query:    1 MSYMNQPGIILLREGTDSSQGKAQLVSNINACQAVMDTVRSTLGPRGMDKLIFDGQKVTISNDGATIMKLLDIAHPAAKTLVDISMSQDAEARLRLKIGKKTTVGDGTTSVVLLAGEILKHIKGFVEDGLHPQVICRGLRKACEVAVARLDAVSVKPVDDEQAREVLIKCAGTALNSKLISSQKDLFAPMVVEAISNLDQQLLDLSLVDEKKVAGGSVTASFLV 672
            MS+M QPGIILLREGTD SQGKAQL+SNINACQAV+D VR+TLGPRGMDKLIFDG+KVTISNDGATIMKLLDIAHPAAK LVD+S+SQDAE            VGDGTT+VVLL+GE+LKH+KGF+EDG++PQVI RGLR+A +VA+ARL+A+SVK  DD  AR VL KCAGTALNSKLI+SQ+ LFAPM+VEA+S LD +L D+ +V  KKV GGSVT SFLV
Sbjct:    1 MSHMLQPGIILLREGTDQSQGKAQLISNINACQAVVDAVRTTLGPRGMDKLIFDGRKVTISNDGATIMKLLDIAHPAAKVLVDVSVSQDAE------------VGDGTTTVVLLSGEVLKHVKGFIEDGVNPQVIIRGLRRAGDVAIARLNALSVKATDDASARAVLEKCAGTALNSKLIASQRGLFAPMIVEAVSLLDARLADVKMVGIKKVPGGSVTDSFLV 212
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BLAST of mRNA_M-pyrifera_M_contig11422.2966.1 vs. uniprot
Match: A0A7R9UFR0_9STRA (CCT-eta n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFR0_9STRA)

HSP 1 Score: 296 bits (759), Expect = 1.400e-94
Identity = 154/224 (68.75%), Postives = 182/224 (81.25%), Query Frame = 1 
Query:    1 MSYMNQPGIILLREGTDSSQGKAQLVSNINACQAVMDTVRSTLGPRGMDKLIFDGQKVTISNDGATIMKLLDIAHPAAKTLVDISMSQDAEARLRLKIGKKTTVGDGTTSVVLLAGEILKHIKGFVEDGLHPQVICRGLRKACEVAVARLDAVSVKPVDDEQAREVLIKCAGTALNSKLISSQKDLFAPMVVEAISNLDQQLLDLSLVDEKKVAGGSVTASFLV 672
            MS M QPGIILLREGTD+SQGKAQ++SNINAC AV +T+++TLGPRGMDKLIFDG+KVTISNDGATIM+LLD+ HPAAKTLVDISMSQDAE            VGDGTTSVVL+A  IL  +K FVEDGLHPQ+I RG+RKA  +AV R+  ++V     ++AR++L+ CAGTALNSKLIS+ KD+FAPMVV+A+S LD QLLDL LV  KKV+GGSV  SFLV
Sbjct:    1 MSMMMQPGIILLREGTDTSQGKAQIISNINACAAVAETIKTTLGPRGMDKLIFDGRKVTISNDGATIMRLLDVVHPAAKTLVDISMSQDAE------------VGDGTTSVVLIAASILDEMKSFVEDGLHPQIIIRGIRKAANLAVQRVKDLAVSMRGGDEARQLLVTCAGTALNSKLISNHKDMFAPMVVDAVSMLDPQLLDLDLVGIKKVSGGSVRQSFLV 212
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BLAST of mRNA_M-pyrifera_M_contig11422.2966.1 vs. uniprot
Match: A0A7S2W4P1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W4P1_9STRA)

HSP 1 Score: 279 bits (714), Expect = 1.610e-92
Identity = 154/219 (70.32%), Postives = 178/219 (81.28%), Query Frame = 1 
Query:    1 MSYMNQPGIILLREGTDSSQGKAQLVSNINACQAVMDTVRSTLGPRGMDKLIFDGQKVTISNDGATIMKLLDIAHPAAKTLVDISMSQDAEARLRLKIGKKTTVGDGTTSVVLLAGEILKHIKGFVEDGLHPQVICRGLRKACEVAVARLDAVSVKPVDDEQAREVLIKCAGTALNSKLISSQKDLFAPMVVEAISNLDQQLLDLSLVDEKKVAGGSVT 657
            MSYM QPGIILLREGTD+SQGKAQLVSNINACQAV +T+R+TLGPRGMDKL+ DG KVTISNDGATIM+LL+I HPAAKTLVDISMSQDAE            VGDGTTSVVLLA E+LK IKG+VE+ LHPQ+I +G+R A + AV  L +++V  VD E +R +L   AGTALNSKLIS+QK LFAPMVV+AIS LD++ LDL+LV  KKV GGSVT
Sbjct:   16 MSYMMQPGIILLREGTDTSQGKAQLVSNINACQAVAETIRTTLGPRGMDKLVSDGTKVTISNDGATIMRLLEIVHPAAKTLVDISMSQDAE------------VGDGTTSVVLLAAEMLKQIKGYVEEDLHPQIIMQGVRMAAKHAVEYLRSIAVS-VDLEGSRGMLEVFAGTALNSKLISNQKSLFAPMVVDAISILDEEELDLNLVGVKKVPGGSVT 221
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BLAST of mRNA_M-pyrifera_M_contig11422.2966.1 vs. uniprot
Match: A0A7S1U8Z7_9STRA (CCT-eta n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8Z7_9STRA)

HSP 1 Score: 290 bits (742), Expect = 1.210e-91
Identity = 153/224 (68.30%), Postives = 180/224 (80.36%), Query Frame = 1 
Query:    1 MSYMNQPGIILLREGTDSSQGKAQLVSNINACQAVMDTVRSTLGPRGMDKLIFDGQKVTISNDGATIMKLLDIAHPAAKTLVDISMSQDAEARLRLKIGKKTTVGDGTTSVVLLAGEILKHIKGFVEDGLHPQVICRGLRKACEVAVARLDAVSVKPVDDEQAREVLIKCAGTALNSKLISSQKDLFAPMVVEAISNLDQQLLDLSLVDEKKVAGGSVTASFLV 672
            MS+M QPGIILLREGTD+SQGKAQ+VSNINAC AV +T+++TLGPRGMDKLIFDG+KVTISNDGATIM+LLD+ HPAAKTLVDISMSQDAE            VGDGTTSVVL+A  IL  +K FV+DGLHPQ+I RG+R+A  +AV R+  + V     E+AR++L  CAGTALNSKLIS  +DLFAPMVV+A+S LD +LLDL+LV  KKV GGSV  SFLV
Sbjct:   31 MSHMMQPGIILLREGTDTSQGKAQIVSNINACAAVAETIKTTLGPRGMDKLIFDGRKVTISNDGATIMRLLDVVHPAAKTLVDISMSQDAE------------VGDGTTSVVLIAASILNEMKHFVDDGLHPQIIIRGIRRAANLAVDRVRELGVAMHSTEEARKLLETCAGTALNSKLISHHQDLFAPMVVDAVSMLDPELLDLNLVGIKKVPGGSVRQSFLV 242
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BLAST of mRNA_M-pyrifera_M_contig11422.2966.1 vs. uniprot
Match: A0A7S2CM60_9STRA (T-complex protein 1 subunit eta n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CM60_9STRA)

HSP 1 Score: 283 bits (723), Expect = 2.720e-89
Identity = 156/220 (70.91%), Postives = 175/220 (79.55%), Query Frame = 1 
Query:   16 QPGIILLREGTDSSQGKAQLVSNINACQAVMDTVRSTLGPRGMDKLIFDGQKVTISNDGATIMKLLDIAHPAAKTLVDISMSQDAEARLRLKIGKKTTVGDGTTSVVLLAGEILKHIKGFVEDGLHPQVICRGLRKACEVAVARLDAVSVKPVDDEQAREVLIKCAGTALNSKLISSQKDLFAPMVVEAISNLDQQLL-DLSLVDEKKVAGGSVTASFLV 672
            QPGIILLREGTD SQGKAQL+SNINACQAV DTVR+TLGPRGMDKL+FDGQ+VTISNDGATIMKLLDI HPAAKTLVDISMSQDAE            VGDGTTSVVLLAGE+LK IK FVE+GLHPQ+I  GLRKA +VAVARL  ++V  +     R++L   AGTALNSKLIS+QK LF PM+V+A+S LD +   DL +V  KKV GG VT SFLV
Sbjct:    8 QPGIILLREGTDQSQGKAQLISNINACQAVADTVRTTLGPRGMDKLVFDGQRVTISNDGATIMKLLDIVHPAAKTLVDISMSQDAE------------VGDGTTSVVLLAGEVLKQIKPFVEEGLHPQIIMGGLRKAAQVAVARLKEIAVD-IGAAGNRDMLETFAGTALNSKLISNQKSLFCPMIVDAVSILDMEPAPDLDMVGIKKVPGGDVTQSFLV 214
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BLAST of mRNA_M-pyrifera_M_contig11422.2966.1 vs. uniprot
Match: A0A7S2V255_9STRA (T-complex protein 1 subunit eta n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V255_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.810e-88
Identity = 150/224 (66.96%), Postives = 174/224 (77.68%), Query Frame = 1 
Query:    1 MSYMNQPGIILLREGTDSSQGKAQLVSNINACQAVMDTVRSTLGPRGMDKLIFDGQKVTISNDGATIMKLLDIAHPAAKTLVDISMSQDAEARLRLKIGKKTTVGDGTTSVVLLAGEILKHIKGFVEDGLHPQVICRGLRKACEVAVARLDAVSVKPVDDEQAREVLIKCAGTALNSKLISSQKDLFAPMVVEAISNLDQQLLDLSLVDEKKVAGGSVTASFLV 672
            MSYM +PGIILLREGTD+SQGKAQLVSNINACQA+ D +R+TLGPRGMDKL+FDG+ VT+SNDGATIMKLLD+ HPAAK LVDIS+SQDAE            VGDGTTSVVLLA  +L  +K  +ED +HPQV+ RG+R A   A   L+ +SV   +   A ++L+KCAGTALNSKLI++QK LFAPMVVE I  LD QLLDLSLV  KKV GGSVT SFLV
Sbjct:    1 MSYMMKPGIILLREGTDTSQGKAQLVSNINACQAIADAIRTTLGPRGMDKLVFDGRNVTVSNDGATIMKLLDVVHPAAKMLVDISLSQDAE------------VGDGTTSVVLLAASLLSQVKTHIEDNMHPQVVVRGVRAAALEAQKLLEGMSVS-FEGADADQMLLKCAGTALNSKLIAAQKGLFAPMVVECIKYLDPQLLDLSLVGIKKVQGGSVTDSFLV 211
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BLAST of mRNA_M-pyrifera_M_contig11422.2966.1 vs. uniprot
Match: F0XWG1_AURAN (T-complex protein 1 subunit eta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWG1_AURAN)

HSP 1 Score: 280 bits (715), Expect = 5.620e-88
Identity = 152/222 (68.47%), Postives = 174/222 (78.38%), Query Frame = 1 
Query:    7 YMNQPGIILLREGTDSSQGKAQLVSNINACQAVMDTVRSTLGPRGMDKLIFDGQKVTISNDGATIMKLLDIAHPAAKTLVDISMSQDAEARLRLKIGKKTTVGDGTTSVVLLAGEILKHIKGFVEDGLHPQVICRGLRKACEVAVARLDAVSVKPVDDEQAREVLIKCAGTALNSKLISSQKDLFAPMVVEAISNLDQQLLDLSLVDEKKVAGGSVTASFLV 672
            Y  QPGIILLREGTDSSQGK QL+SNINAC AV+D+VRSTLGPRGMDKL++DG KVTISNDGATIMKLLDI HPAA+ L +ISMSQD+E            VGDGTTSVVLLAGE+LK +K FVEDGLHPQ I RG+RKA ++  ARL A++V P +  + + + I  AGTALNSKLI++ KDLFAPMVV+AI  LD  LLDL LV  KKV GGSVT SF V
Sbjct:   14 YGQQPGIILLREGTDSSQGKPQLISNINACGAVVDSVRSTLGPRGMDKLMYDGNKVTISNDGATIMKLLDIVHPAARVLAEISMSQDSE------------VGDGTTSVVLLAGEMLKQVKPFVEDGLHPQTIARGVRKAVDLVSARLKAIAVTPPEAMRRKRLEI-LAGTALNSKLIANYKDLFAPMVVDAIMALDTSLLDLKLVGVKKVPGGSVTDSFAV 222
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BLAST of mRNA_M-pyrifera_M_contig11422.2966.1 vs. uniprot
Match: A0A8J2SMC1_9STRA (T-complex protein 1 subunit eta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMC1_9STRA)

HSP 1 Score: 274 bits (700), Expect = 8.420e-86
Identity = 151/222 (68.02%), Postives = 171/222 (77.03%), Query Frame = 1 
Query:    7 YMNQPGIILLREGTDSSQGKAQLVSNINACQAVMDTVRSTLGPRGMDKLIFDGQKVTISNDGATIMKLLDIAHPAAKTLVDISMSQDAEARLRLKIGKKTTVGDGTTSVVLLAGEILKHIKGFVEDGLHPQVICRGLRKACEVAVARLDAVSVKPVDDEQAREVLIKCAGTALNSKLISSQKDLFAPMVVEAISNLDQQLLDLSLVDEKKVAGGSVTASFLV 672
            Y  QPGIILLREGTD+SQGKAQL+SNINAC AV+D VRSTLGPRGMDKL++DG KVTISNDGATIMKLLDI HPAA+ L +ISMSQD+E            VGDGTTSVVLLAGE+LK +K FVEDGLHPQ I RG+RKA  +   RL  V+V    D++ R + I  AGTALNSKLI++ KDLFAPMVV+A+  LD  LLDL LV  KKV GGSVT SF V
Sbjct:   12 YGQQPGIILLREGTDTSQGKAQLISNINACGAVVDAVRSTLGPRGMDKLMYDGTKVTISNDGATIMKLLDIVHPAARVLAEISMSQDSE------------VGDGTTSVVLLAGEMLKQVKPFVEDGLHPQTIARGVRKAVGLISKRLAEVAVDMPPDQRRRRLEI-LAGTALNSKLIANYKDLFAPMVVDAVIALDPLLLDLKLVGVKKVPGGSVTDSFFV 220
[Close]
BLAST of mRNA_M-pyrifera_M_contig11422.2966.1 vs. uniprot
Match: A0A6V2B8N4_9STRA (CCT-eta n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2B8N4_9STRA)

HSP 1 Score: 267 bits (682), Expect = 4.490e-83
Identity = 149/224 (66.52%), Postives = 176/224 (78.57%), Query Frame = 1 
Query:   16 QPGIILLREGTDSSQGKAQLVSNINACQAVMDTVRSTLGPRGMDKLIFDGQKVTISNDGATIMKLLDIAHPAAKTLVDISMSQDAEARLRLKIGKKTTVGDGTTSVVLLAGEILKHIKGFVEDGLHPQVICRGLRKACEVAVARLDAVSVKPVDDE--QAREVLIKCAGTALNSKLISSQKDLFAPMVVEAISNLDQ--QLLDL-SLVDEKKVAGGSVTASFLV 672
            +PG+ILLREGTD+SQGKAQLVSNINACQAV D VR+TLGPRGMDKL+FDG+KVTISNDGATIMKLL+IAHPAAKTLVDISMSQDAE            VGDGTTSVVLLAG+ILKH+K FVE+G+HPQ+I R +R A  + V ++  +S+ P D    + +E+L+K A TALNSKLISS KDLFAPMVV+A+  LD    L DL SL+  K++ GG V  SFLV
Sbjct:    4 RPGVILLREGTDTSQGKAQLVSNINACQAVADAVRTTLGPRGMDKLVFDGRKVTISNDGATIMKLLEIAHPAAKTLVDISMSQDAE------------VGDGTTSVVLLAGDILKHMKPFVEEGVHPQIIMRNVRNAGRLGVEKVKELSI-PFDTTTPEGKEMLLKTASTALNSKLISSHKDLFAPMVVKAVQALDDGGNLDDLMSLIAIKQIPGGDVRQSFLV 214
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11422.2966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G400_ECTSI5.820e-12788.84CCT-eta n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A836CEV1_9STRA1.060e-10273.66T-complex protein 1 subunit eta n=1 Tax=Tribonema ... [more]
A0A7R9UFR0_9STRA1.400e-9468.75CCT-eta n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
A0A7S2W4P1_9STRA1.610e-9270.32Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1U8Z7_9STRA1.210e-9168.30CCT-eta n=2 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
A0A7S2CM60_9STRA2.720e-8970.91T-complex protein 1 subunit eta n=1 Tax=Florenciel... [more]
A0A7S2V255_9STRA1.810e-8866.96T-complex protein 1 subunit eta n=1 Tax=Fibrocapsa... [more]
F0XWG1_AURAN5.620e-8868.47T-complex protein 1 subunit eta n=1 Tax=Aureococcu... [more]
A0A8J2SMC1_9STRA8.420e-8668.02T-complex protein 1 subunit eta n=1 Tax=Pelagomona... [more]
A0A6V2B8N4_9STRA4.490e-8366.52CCT-eta n=3 Tax=Ditylum brightwellii TaxID=49249 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11422contigM-pyrifera_M_contig11422:4601..9674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score379.4
Seed ortholog evalue1.2e-102
Seed eggNOG ortholog2880.D7G400
Preferred nameCCT7
KEGG koko:K09499
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0002199,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0005886,GO:0006457,GO:0006458,GO:0006810,GO:0007338,GO:0007339,GO:0008037,GO:0008150,GO:0009566,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010035,GO:0010038,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0015630,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033044,GO:0035036,GO:0042221,GO:0042802,GO:0043209,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044183,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045935,GO:0046686,GO:0046931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051704,GO:0060255,GO:0060341,GO:0061077,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070202,GO:0070203,GO:0071840,GO:0071944,GO:0080090,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0101031,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904814,GO:1904816,GO:1904851,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
EggNOG free text desc.protein binding involved in protein folding
EggNOG OGsCOG0459@1,KOG0361@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110,ko04147
Exons6
Model size672
Cds size672
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11422.2966.1prot_M-pyrifera_M_contig11422.2966.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11422 4601..9674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815658.2300713-CDS-M-pyrifera_M_contig11422:4600..46991622815658.2300713-CDS-M-pyrifera_M_contig11422:4600..4699Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11422 4601..4699 +
1692277508.452628-CDS-M-pyrifera_M_contig11422:4600..46991692277508.452628-CDS-M-pyrifera_M_contig11422:4600..4699Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11422 4601..4699 +
1622815658.2419832-CDS-M-pyrifera_M_contig11422:5129..53391622815658.2419832-CDS-M-pyrifera_M_contig11422:5129..5339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11422 5130..5339 +
1692277508.4711988-CDS-M-pyrifera_M_contig11422:5129..53391692277508.4711988-CDS-M-pyrifera_M_contig11422:5129..5339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11422 5130..5339 +
1622815658.2559197-CDS-M-pyrifera_M_contig11422:5689..57791622815658.2559197-CDS-M-pyrifera_M_contig11422:5689..5779Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11422 5690..5779 +
1692277508.481136-CDS-M-pyrifera_M_contig11422:5689..57791692277508.481136-CDS-M-pyrifera_M_contig11422:5689..5779Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11422 5690..5779 +
1622815658.2666495-CDS-M-pyrifera_M_contig11422:8007..80941622815658.2666495-CDS-M-pyrifera_M_contig11422:8007..8094Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11422 8008..8094 +
1692277508.4987302-CDS-M-pyrifera_M_contig11422:8007..80941692277508.4987302-CDS-M-pyrifera_M_contig11422:8007..8094Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11422 8008..8094 +
1622815658.276669-CDS-M-pyrifera_M_contig11422:9247..93821622815658.276669-CDS-M-pyrifera_M_contig11422:9247..9382Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11422 9248..9382 +
1692277508.5145895-CDS-M-pyrifera_M_contig11422:9247..93821692277508.5145895-CDS-M-pyrifera_M_contig11422:9247..9382Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11422 9248..9382 +
1622815658.2882426-CDS-M-pyrifera_M_contig11422:9623..96741622815658.2882426-CDS-M-pyrifera_M_contig11422:9623..9674Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11422 9624..9674 +
1692277508.525594-CDS-M-pyrifera_M_contig11422:9623..96741692277508.525594-CDS-M-pyrifera_M_contig11422:9623..9674Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11422 9624..9674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11422.2966.1

>prot_M-pyrifera_M_contig11422.2966.1 ID=prot_M-pyrifera_M_contig11422.2966.1|Name=mRNA_M-pyrifera_M_contig11422.2966.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=224bp
MSYMNQPGIILLREGTDSSQGKAQLVSNINACQAVMDTVRSTLGPRGMDK
LIFDGQKVTISNDGATIMKLLDIAHPAAKTLVDISMSQDAEARLRLKIGK
KTTVGDGTTSVVLLAGEILKHIKGFVEDGLHPQVICRGLRKACEVAVARL
DAVSVKPVDDEQAREVLIKCAGTALNSKLISSQKDLFAPMVVEAISNLDQ
QLLDLSLVDEKKVAGGSVTASFLV
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mRNA from alignment at M-pyrifera_M_contig11422:4601..9674+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11422.2966.1 ID=mRNA_M-pyrifera_M_contig11422.2966.1|Name=mRNA_M-pyrifera_M_contig11422.2966.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5074bp|location=Sequence derived from alignment at M-pyrifera_M_contig11422:4601..9674+ (Macrocystis pyrifera P11B4 male)
ATGTCGTACATGAATCAGCCGGGGATCATCCTCCTCCGGGAGGGAACGGA
CTCTAGCCAGGGGAAGGCCCAACTGGTGTCCAACATTAACGCCTGCCAGG
TATGTAGTGTCTTGAGTCTCGCGGGGAGTTGATGCTGTAGTGCTGTTGGG
GTTGTGCTGGTGGTAGCTGTCTAGCCGGCGGAAGGCGCAGTTGATGTCTA
ACAGTTACGCTTGCCAGGTCAGAGTGCGGCTGCCGGGAGTGCGTAGTCTA
TGTTGTGCTTGGGGTTGGGCTGGTGGCGGGGGGGGTGGCCTCGTGTCTGC
CCTAGTTTGTGTCTGGTATAGTTTGCTTCTTCTTGTGCCCATGTATAGAT
GGTGTCCCGTGGTTTGGTTCGGGCTTTGTATAGTGCTTTGCCCTGGGCTT
GTTGGAGACGGCGGTCTTGGTGCTTGCCTGCCGTTCAAGTGGGCGGGGGC
TAGCTGGAGTTAGAGGTTTGGTCTGATTTGATCTGACCTCTCTGGTGTGT
GCAACGTCTCCTCCACCCCCCTCGTCCAGGCCGTGATGGACACGGTACGG
TCCACCCTGGGCCCCCGTGGCATGGACAAGCTTATCTTCGATGGCCAGAA
GGTGACCATCTCTAATGATGGTGCTACGATCATGAAGCTGCTGGACATCG
CCCACCCCGCGGCGAAGACTCTGGTGGACATTTCCATGTCTCAGGACGCC
GAGGCAAGACTAAGACTAAAAATTGGTAAAAAGACGACCGTCTTATCTGG
CAAAGGCGGCAGCAGCAGGGTCTTGACGGTGCTGTTTTATGGGGGAAATT
GACGTCAACTCATCTCCCTGCTGATGACGATGGGCGAGACTGTTTCCGTG
CGTTTTTATTGTTTTTTGCTTTGGCAGCGGTGCGGTCATGCGTGTCCTCT
TGCAATTGCTGTTGTTGTTGAGGTTGCTGTTGATGTTGTTTATATGGTGT
TGATGTTGCTGTGAATGCTGTTGTTGCGGTTGATGTCGTCATTATATTGT
AGACGCTGCTGGTGTTGCTGTTGTTGGCTGTGGCGACGCTGACTGCGCCA
CTTTCTGCTCCTCGTATCGGCGGTTGTTTGGTTTCGCAGGTCGGCGACGG
GACGACATCGGTCGTGCTGTTGGCCGGAGAGATCCTCAAGCACATCAAGG
GCTTCGTCGAGGACGGCCTGCACCCACAGGTCCGATCGCTCATGGTGCTT
TTTTGTTGACTGTAGCCGGCGGTGCTGCCACTGCTACTGCTCTGTTTCCG
GTACTGAAACTGGTACGGGTAAGGACACTGGTACTAAAGCTAGTAGTGGT
ACTGATACTAAAACTGGTACTGGTACGAGTACCGATACTAATAAAACTGG
TAGTCGTACTGATACTGGAACTGGTACTGGTACGAGTACTGATGCTATTA
AAACCGGTAGTGGTACTGATATTAGTACTGATAGTAATACCGGCGCTGGC
ACTGATGCTGGAACTATTGATAGTGCTGGTACTGGGTACTGGTGCAGGTA
CGACTAGTATCGATACTACAGTAGTACTACAGTAGTACCGGCGCTGATAC
TGGTACTGCTGCGACAACGCGCAGACACATTATCCCTTTGGCTCGTAGCT
GTTGCCTGTGACACACGATGACTTGCCATTCCCACGCCGCGACCGTAACT
GCTCGACCATGTCTTAAGGGAAAGAGGTGAGCGTAATGCGCCCGTTCTCC
TTTCTTCAACATGTCATCCCCCCCTCTGTCCCGAAATATGGGGACCAATT
TCACATTAATATTTAATACAAGCGGTCTTTATATTTTGGACGAAGTGGTA
GAAGCTACGGTGGGGCTATACAGCACCTGCTTTTTTTTATGAGGTTCCTC
ACTTGCTTATAGTATTGGAGCTCCATACGTCCCCCAATGTGTTTTTGCTC
GAGCAAAAAAATAGCCTTTGTTCACCTCGTTCTATGGTGGGTGTTGTTCG
AGTACTACGGTAAACAGAATGGGGGTTTGATGTACGACTCTGAACCGAAA
TGTAAAGACCACCATACGGGGCGGTATCAGCCGGGGGGATGTCCGTTTTT
GTCCACGGTTTGATAGAGTTGTATATGTATGGAAGGATTTCTGACCCGGA
GATGGGGCCTTACCGTCCCAGAGTGCGGCAGGACATCAACCATGAGCCCC
AGCCAACTCGAAATCGCTCAGTGGGGTTGGGGTTTCCATACCTCGCGGGG
ATATTGAGTAGCTCAGCCTCAATCAAAGGATTTCCCCCGCCAGCCACACA
AAATGCTTCCCCTAACCCCTATAAAGTGACGCGTCTGTCGCCAGTCTCTT
ATCAACATTGATGGAAGAACGCCGTAGCCGGCAACCTGCACGGGCGACAC
CGACACGGTCCGGTCTCCCGCCGGTCACGGCTGCGACTCTCTCCATCTTG
AAAGGGGGACGATTTTACTACACAGTTGATGCATGCGGTACACGACATCT
AATATTTATTTATCTTGCATTTAGAAACGGAGCGGTAAGAAAGGCAGGCT
GAAAATTGCAGGGACTTATTATATTGAATGAGGGAGTCGATGTACTGAAG
TTAGTACGGAGCGCACCCTTGTTCCCAAAATATGAATTAAGAAACCCTGC
CTGGAACAGCTTTCCTGTTTGTTATTCTTTTGTAGGTGTCTGGTTTACTG
CAGAAACTAGCCAACTCTATTCCCAAGTGGTTCATCCCCCCCCAAAATGT
ACTGCGGTCAAGGGGCCGGTCAATGGTTGAAAAACCTGAACGCGTTGCAC
CTTCCCCTTTAGTCGATCGGATGGATGGAACAGATGAATTGATGGCGGGG
TCGAGGGATGGAACGGATTCTTTGGCGAGTAGGTGCATGATGGATGATGG
ATGCATCGATGAACCTACTGTAATTAATGTGCATGCCAACGCCGAACAGC
GACGGTTTTTCGTGAGGAACGGTAGAAAGAAAAACGCGTTAAATGGTTTC
ACCCACAAGTCACAAGGATGAACGAATCAGCAGACAGGCCAGCCAACGCT
ACTGTAGAGAAAGAAACGGCGTTTCTCTGGAGAGCCTCTCGAAGGCGCTT
TGCACCTGCACGCAATTATATGGTGTTTTGTATTGTTGGACAGTCGGACA
GTCGGACAGTCGGACAGTCGGACAGTTGGACAGTCGGACAGTCGGACAGT
CGGACAGTTGGACAGTCGGACAGTCGGACAGTCGGACAGTCGGTTGTGTA
TGGTATTGTTGGTACGATTGAAACAGGCGCTACGTACACATGGCCAGATG
ACAAATAGCATAGCAAAAGTCGACAGATGGAACCGATCAACAAACGTACC
TTGACCCCTTTTTTTTTTCGGTGCCCCTCCCCTCTCTATGTCTGTGATGC
GATCGCGACGTGGTTTGGTTTGGTTTCGTTATGGTGGCAACTGATGACAT
CAAACAGGTGATCTGCCGCGGTCTGCGGAAGGCGTGCGAGGTTGCGGTGG
CCAGGTTGGACGCCGTGTCCGTCAAGCCTGTCGACGACGAGCAGGTAAGC
CATTCATACTCACACGCTGCCGAGGTGGAAAAACTGCCACGAGTGCAAGA
TGCAGTCCATTCCGCTCGTGTCGTCCACGCGAGTCGACGAGGGGAAAAAT
ATGCGGAGCTCTTCTTGCGCAAAAAAAAGCAAGGCACTCACCTCGACCAT
AGCGAGGTAGGCGGGGTGTAGGCGGGGGGGGGGGGTCCGAATTATCATGC
CTGGCCGGAGTCGTATGGCCATAGACCCCCGGCTCCCCACAATGCCGGGG
CGGAAGACGGGGGGCTTTCCCCGACCAAACAAGACATTGCTTGCACCAAG
CGCGAAGCCCGTGAGGTGTTGGGCGAGCCGCATGAGGGGTGCAGCATCAA
TGAATTGATTTAATTTCTGGTGTGGCCACTTCCAGGACAGCAATGGGTTT
ACTATGTAACTGTCTCGTGGGTGCCTCACCATAATACACACTACGAGGTA
CGTGATACGATCATCCCCCTTGTGCGGAGTAAAGGTTCTCCCCGCACAAA
AATGATCTAACTCGACCACAAGCCGTGTTAACCGCAAAAAAAAAAAAAAA
AAAACCGCACCCCCGCTTTCTCGCCCACGCAAAGAAAGGCGGGGGCTACA
CACTCCCCTCCCACCCACGTCAACTCTACCTTTATATACCGGGTATATAT
AATATAGGAGGAGGGTACTCGACATCATGCATGGCGGTACTCGTGTGACC
ATTGACCCTCGCTTCCCTACAATACGGGGACGGAGCACGTCGAGTTTTCA
CCGACCATTCCGACATAGTGGGGAGAGGGAGAGAAAAACCGTGTGGCCCG
ACTCTGAGTTGCGACTGGGGAGGGAGCAGGAGTACAAGGACGAAAATAGT
AGATGGGATGAAAAAAGAAAAGAAAAGAAAAGAAAAAAAAAGAAAGGTAC
TGCTGCAGCAGCACGCGTTGCTGAGTGAGGCCTTGGTGCCGCGCATACCC
CGAGACGATCAGCCTTGCTGTAGTTAACCTCTTGACATCCGCTCCCACGC
TTTTGAGGACACGCGACTTGGATGTTTGCGTGTCCGCTTGTTCCTTGCTT
CTCTTCCTTGTCCACACCCCACCACCCCACTCTCCCCCGAATCCCCGCTT
TTCCTTCTCCTGTTTGTGTGGTCTGGTCTTGTTCTGTCTTCCGGTAGGCT
CGCGAGGTGCTCATCAAGTGTGCTGGTACGGCGTTGAACTCTAAGCTGAT
CTCTTCGCAGAAGGACCTGTTCGCTCCAATGGTTGTGGAGGCGATCTCCA
ACCTCGACCAGCAGCTCCTCGACCTCAGCCTGGTGAGAAGAAGAACAAGT
AAAAGATGGGTCGGTGGGCGGTCTTCGTGCTGTAGTTTTGGCCCCTCAGT
CAAGGCCTTTTCTTAAAGCAGAATTTCACTTAATTCGGAATGCATATTGT
GCAGCTATAAGTGTGGCCGTGCCAAAAGCCATTTGACCTCTCTTAAATCA
GTATCGTCTTGAACGATGCCGATAGCTCTTAAGCCGTGACCCCTCCCACT
GTTGCCACTGTTGTATTGTGTAGGTGGACGAGAAGAAGGTTGCAGGCGGT
AGCGTAACTGCCAGCTTCCTCGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11422:4601..9674+

>mRNA_M-pyrifera_M_contig11422.2966.1 ID=mRNA_M-pyrifera_M_contig11422.2966.1|Name=mRNA_M-pyrifera_M_contig11422.2966.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1344bp|location=Sequence derived from alignment at M-pyrifera_M_contig11422:4601..9674+ (Macrocystis pyrifera P11B4 male)
ATGTCGTACATGAATCAGCCGGGGATCATCCTCCTCCGGGAGGGAACGGA
CTCTAGCCAGGGGAAGGCCCAACTGGTGTCCAACATTAACGCCTGCCAGA
TGTCGTACATGAATCAGCCGGGGATCATCCTCCTCCGGGAGGGAACGGAC
TCTAGCCAGGGGAAGGCCCAACTGGTGTCCAACATTAACGCCTGCCAGGC
CGTGATGGACACGGTACGGTCCACCCTGGGCCCCCGTGGCATGGACAAGC
TTATCTTCGATGGCCAGAAGGTGACCATCTCTAATGATGGTGCTACGATC
ATGAAGCTGCTGGACATCGCCCACCCCGCGGCGAAGACTCTGGTGGACAT
TTCCATGTCTCAGGACGCCGAGGCAAGACTAAGACTAAAAATTGGTAAAA
AGACGACCGCCGTGATGGACACGGTACGGTCCACCCTGGGCCCCCGTGGC
ATGGACAAGCTTATCTTCGATGGCCAGAAGGTGACCATCTCTAATGATGG
TGCTACGATCATGAAGCTGCTGGACATCGCCCACCCCGCGGCGAAGACTC
TGGTGGACATTTCCATGTCTCAGGACGCCGAGGCAAGACTAAGACTAAAA
ATTGGTAAAAAGACGACCGTCGGCGACGGGACGACATCGGTCGTGCTGTT
GGCCGGAGAGATCCTCAAGCACATCAAGGGCTTCGTCGAGGACGGCCTGC
ACCCACAGGTCGGCGACGGGACGACATCGGTCGTGCTGTTGGCCGGAGAG
ATCCTCAAGCACATCAAGGGCTTCGTCGAGGACGGCCTGCACCCACAGGT
GATCTGCCGCGGTCTGCGGAAGGCGTGCGAGGTTGCGGTGGCCAGGTTGG
ACGCCGTGTCCGTCAAGCCTGTCGACGACGAGCAGGTGATCTGCCGCGGT
CTGCGGAAGGCGTGCGAGGTTGCGGTGGCCAGGTTGGACGCCGTGTCCGT
CAAGCCTGTCGACGACGAGCAGGCTCGCGAGGTGCTCATCAAGTGTGCTG
GTACGGCGTTGAACTCTAAGCTGATCTCTTCGCAGAAGGACCTGTTCGCT
CCAATGGTTGTGGAGGCGATCTCCAACCTCGACCAGCAGCTCCTCGACCT
CAGCCTGGCTCGCGAGGTGCTCATCAAGTGTGCTGGTACGGCGTTGAACT
CTAAGCTGATCTCTTCGCAGAAGGACCTGTTCGCTCCAATGGTTGTGGAG
GCGATCTCCAACCTCGACCAGCAGCTCCTCGACCTCAGCCTGGTGGACGA
GAAGAAGGTTGCAGGCGGTAGCGTAACTGCCAGCTTCCTCGTGGTGGACG
AGAAGAAGGTTGCAGGCGGTAGCGTAACTGCCAGCTTCCTCGTG
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