mRNA_M-pyrifera_M_contig114207.2961.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114207.2961.1
Unique NamemRNA_M-pyrifera_M_contig114207.2961.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114207.2961.1 vs. uniprot
Match: A0A831XIU2_9BACT (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme (Fragment) n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A831XIU2_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 4.720e-13
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1
Query:    4 MRVLVTGGGGYLGCHLVPQLLDAGHEVSVFDRFVFGDEP 120
            + VLVTGGGGYLGCHLVP L++ GH V VFDRF FG+EP
Sbjct:   44 VHVLVTGGGGYLGCHLVPYLIERGHSVRVFDRFCFGEEP 82          
BLAST of mRNA_M-pyrifera_M_contig114207.2961.1 vs. uniprot
Match: A0A7Z9LNM3_9BACT (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Z9LNM3_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.310e-10
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1
Query:    4 MRVLVTGGGGYLGCHLVPQLLDAGHEVSVFDRFVFGDEPLR 126
            MRV+VTGGGGYLG  +   LL+ GH+V +FDRF FGDEP++
Sbjct:    1 MRVMVTGGGGYLGTWITALLLEKGHQVRIFDRFCFGDEPIQ 41          
BLAST of mRNA_M-pyrifera_M_contig114207.2961.1 vs. uniprot
Match: A0A7C5TPE3_9ARCH (SDR family oxidoreductase n=1 Tax=Candidatus Altiarchaeales archaeon TaxID=2250256 RepID=A0A7C5TPE3_9ARCH)

HSP 1 Score: 63.2 bits (152), Expect = 1.640e-10
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1
Query:    1 LMRVLVTGGGGYLGCHLVPQLLDAGHEVSVFDRFVFGD---EPLRG 129
            LM+V VTGG GY+GC LVP LL+ GHEV VFD+  FGD   EP+ G
Sbjct:    7 LMKVTVTGGAGYIGCVLVPMLLERGHEVQVFDKLFFGDYGLEPVLG 52          
BLAST of mRNA_M-pyrifera_M_contig114207.2961.1 vs. uniprot
Match: A0A5B8RHH3_9ZZZZ (UDP-glucose 4-epimerase n=2 Tax=unclassified sequences TaxID=12908 RepID=A0A5B8RHH3_9ZZZZ)

HSP 1 Score: 62.8 bits (151), Expect = 2.220e-10
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1
Query:    7 RVLVTGGGGYLGCHLVPQLLDAGHEVSVFDRFVFGDEPL 123
            RVLVTGGGGY+GC LVP+LLD G++V V DRF FG E L
Sbjct:    3 RVLVTGGGGYIGCVLVPELLDRGYDVRVLDRFFFGRELL 41          
BLAST of mRNA_M-pyrifera_M_contig114207.2961.1 vs. uniprot
Match: T1CAR0_9ZZZZ (NAD-dependent epimerase/dehydratase (Fragment) n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T1CAR0_9ZZZZ)

HSP 1 Score: 60.5 bits (145), Expect = 4.060e-10
Identity = 29/42 (69.05%), Postives = 29/42 (69.05%), Query Frame = 1
Query:    4 MRVLVTGGGGYLGCHLVPQLLDAGHEVSVFDRFVFGDEPLRG 129
            MRVLVTGG GYLG  LVP LL  GH V V DR  FG EPL G
Sbjct:    1 MRVLVTGGAGYLGSVLVPDLLGRGHTVRVLDRLFFGPEPLGG 42          
BLAST of mRNA_M-pyrifera_M_contig114207.2961.1 vs. uniprot
Match: A0A7Y5CCB9_9BACT (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5CCB9_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.160e-9
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    4 MRVLVTGGGGYLGCHLVPQLLDAGHEVSVFDRFVFGDEPL 123
            MR+LVTGG GYLG HLV  L++ GH+V VFDR  FGD P+
Sbjct:    1 MRILVTGGAGYLGNHLVRLLIERGHQVRVFDRLCFGDAPV 40          
BLAST of mRNA_M-pyrifera_M_contig114207.2961.1 vs. uniprot
Match: A0A845TZB6_9BACT (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Acidipila sp. TaxID=1872113 RepID=A0A845TZB6_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.170e-9
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    7 RVLVTGGGGYLGCHLVPQLLDAGHEVSVFDRFVFGDEPL 123
            RVLV GG GYLG HLVPQLL+ G+   V D F+FG+EPL
Sbjct:  174 RVLVVGGAGYLGAHLVPQLLERGYRARVLDLFMFGEEPL 212          
BLAST of mRNA_M-pyrifera_M_contig114207.2961.1 vs. uniprot
Match: A0A350PGE6_9BACT (Epimerase n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A350PGE6_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.920e-9
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:    4 MRVLVTGGGGYLGCHLVPQLLDAGHEVSVFDRFVFGDEPL 123
            M++LVTGG GY+G  L+PQLL+AGHEV+VFD  +FG   L
Sbjct:    1 MKILVTGGAGYIGTTLLPQLLEAGHEVTVFDNLMFGGNQL 40          
BLAST of mRNA_M-pyrifera_M_contig114207.2961.1 vs. uniprot
Match: A0A7V2Y364_9BACT (Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y364_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 2.180e-9
Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1
Query:    4 MRVLVTGGGGYLGCHLVPQLLDAGHEVSVFDRFVFGDEPLR 126
            MRVLVTGG GYLG  LVP LL  GH V V+DRF FG++ L+
Sbjct:   27 MRVLVTGGAGYLGSSLVPLLLGQGHTVRVYDRFCFGEDSLK 67          
BLAST of mRNA_M-pyrifera_M_contig114207.2961.1 vs. uniprot
Match: A0A7V2CVM5_9BACT (NAD(P)-dependent oxidoreductase n=1 Tax=Chthoniobacterales bacterium TaxID=2201154 RepID=A0A7V2CVM5_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 2.630e-9
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    4 MRVLVTGGGGYLGCHLVPQLLDAGHEVSVFDRFVFGDEPL 123
            M++L+TGG GYLG  LVP+LLDAGH V+V DRF FG   L
Sbjct:    1 MKILITGGAGYLGSVLVPRLLDAGHAVTVVDRFQFGQSSL 40          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114207.2961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A831XIU2_9BACT4.720e-1374.36Aminotransferase class I/II-fold pyridoxal phospha... [more]
A0A7Z9LNM3_9BACT1.310e-1063.41Aminotransferase class I/II-fold pyridoxal phospha... [more]
A0A7C5TPE3_9ARCH1.640e-1063.04SDR family oxidoreductase n=1 Tax=Candidatus Altia... [more]
A0A5B8RHH3_9ZZZZ2.220e-1071.79UDP-glucose 4-epimerase n=2 Tax=unclassified seque... [more]
T1CAR0_9ZZZZ4.060e-1069.05NAD-dependent epimerase/dehydratase (Fragment) n=1... [more]
A0A7Y5CCB9_9BACT1.160e-965.00Aminotransferase class I/II-fold pyridoxal phospha... [more]
A0A845TZB6_9BACT1.170e-966.67NAD-dependent epimerase/dehydratase family protein... [more]
A0A350PGE6_9BACT1.920e-962.50Epimerase n=1 Tax=Balneola sp. TaxID=2024824 RepID... [more]
A0A7V2Y364_9BACT2.180e-965.85Aminotransferase class I/II-fold pyridoxal phospha... [more]
A0A7V2CVM5_9BACT2.630e-965.00NAD(P)-dependent oxidoreductase n=1 Tax=Chthonioba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114207contigM-pyrifera_M_contig114207:431..559 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size129
Cds size126
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.898522-UTR-M-pyrifera_M_contig114207:430..4331622815657.898522-UTR-M-pyrifera_M_contig114207:430..433Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114207 431..433 +
1692277508.3093114-UTR-M-pyrifera_M_contig114207:430..4331692277508.3093114-UTR-M-pyrifera_M_contig114207:430..433Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114207 431..433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.9124172-CDS-M-pyrifera_M_contig114207:433..5591622815657.9124172-CDS-M-pyrifera_M_contig114207:433..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114207 434..559 +
1692277508.3184376-CDS-M-pyrifera_M_contig114207:433..5591692277508.3184376-CDS-M-pyrifera_M_contig114207:433..559Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114207 434..559 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114207.2961.1prot_M-pyrifera_M_contig114207.2961.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114207 434..559 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114207.2961.1

>prot_M-pyrifera_M_contig114207.2961.1 ID=prot_M-pyrifera_M_contig114207.2961.1|Name=mRNA_M-pyrifera_M_contig114207.2961.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=42bp
MRVLVTGGGGYLGCHLVPQLLDAGHEVSVFDRFVFGDEPLRG
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mRNA from alignment at M-pyrifera_M_contig114207:431..559+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114207.2961.1 ID=mRNA_M-pyrifera_M_contig114207.2961.1|Name=mRNA_M-pyrifera_M_contig114207.2961.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig114207:431..559+ (Macrocystis pyrifera P11B4 male)
TTGATGCGGGTATTGGTAACGGGCGGCGGCGGCTATTTGGGGTGTCATTT GGTACCGCAGTTATTGGATGCGGGACATGAGGTCTCGGTGTTTGACCGGT TCGTGTTCGGCGATGAGCCGCTACGTGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114207:431..559+

>mRNA_M-pyrifera_M_contig114207.2961.1 ID=mRNA_M-pyrifera_M_contig114207.2961.1|Name=mRNA_M-pyrifera_M_contig114207.2961.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig114207:431..559+ (Macrocystis pyrifera P11B4 male)
ATGCGGGTATTGGTAACGGGCGGCGGCGGCTATTTGGGGTGTCATTTGGT
ACCGCAGTTATTGGATGCGGGACATGAGGTCTCGGTGTTTGACCGGTTCG
TGTTCGGCGATGAGCCGCTACGTGGTATGCGGGTATTGGTAACGGGCGGC
GGCGGCTATTTGGGGTGTCATTTGGTACCGCAGTTATTGGATGCGGGACA
TGAGGTCTCGGTGTTTGACCGGTTCGTGTTCGGCGATGAGCCGCTACGTG
GT
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