mRNA_M-pyrifera_M_contig114172.2954.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114172.2954.1
Unique NamemRNA_M-pyrifera_M_contig114172.2954.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114172.2954.1 vs. uniprot
Match: A0A7S4M3H8_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4M3H8_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 5.170e-21
Identity = 47/127 (37.01%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   13 DRDGLPMWHKDHMLVIGDAAHAMSPYSGQGVNTAMIDGFLIATMISKALARSPVNTISDSALQALFQKFEDVRKAPVASVVEKGRQAKRL-MGDGKIVNWIYFATMKYFPAKTLINLTFRGDRCNDP 390
            DRD L  WHK  ++++GDAAHAM+P++GQG N A+IDGFL+ ++IS +L+++  + I  S L  +F  +E +RK    + + +GR    L +  G I +W +   + + P   L +  F+ D  N+P
Sbjct:  277 DRDPLDCWHKGRVVLLGDAAHAMNPFAGQGANMAIIDGFLLGSLIS-SLSKNFEDKIPTSELSNMFDHYEKLRKPAATANLNQGRSTANLTLNSGTIKSWCFRTAISWLPNSLLSSFLFKADEQNNP 402          
BLAST of mRNA_M-pyrifera_M_contig114172.2954.1 vs. uniprot
Match: UPI0003713144 (FAD-dependent monooxygenase n=1 Tax=Salsuginibacillus kocurii TaxID=427078 RepID=UPI0003713144)

HSP 1 Score: 73.2 bits (178), Expect = 1.360e-12
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = 1
Query:   13 DRDGLPMWHKDHMLVIGDAAHAMSPYSGQGVNTAMIDGFLIATMISKALARSPVNTISDSALQALFQKFEDVRKAPVASVVEKGRQAKRLMGDGK 297
            D + LP WH D +++IGDAAHA+SP SGQG + A+ D   +AT++++A          D  +  LF ++E+ R+  V  +V  GR+    MGDGK
Sbjct:  283 DIETLPAWHTDRVVLIGDAAHAVSPNSGQGASLALEDAMYLATLLNQA----------DKTISQLFNQYEEDRRPRVEKIVADGRR----MGDGK 363          
BLAST of mRNA_M-pyrifera_M_contig114172.2954.1 vs. uniprot
Match: A0A815I0N0_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815I0N0_9BILA)

HSP 1 Score: 73.2 bits (178), Expect = 1.370e-12
Identity = 36/98 (36.73%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   13 DRDGLPMWHKDHMLVIGDAAHAMSPYSGQGVNTAMIDGFLIATMISKALARSPVNTISDSALQALFQKFEDVRKAPVASVVEKGRQAKRLMGDGKIVN 306
            DRD LP+W+K+ +++IGDAAH  SP+ GQG N AM D + +  M+    A     ++S S L+ +FQ+F D R+     +V++ R+     G+ +++N
Sbjct:  281 DRDELPIWYKERVILIGDAAHGTSPHVGQGGNLAMEDAYYLTKMLP---ASGESYSLSTSTLKTIFQQFTDRRRPRTTEIVKRARKE----GEDRVLN 371          
BLAST of mRNA_M-pyrifera_M_contig114172.2954.1 vs. uniprot
Match: A0A2E7EJ92_9PLAN (Monooxygenase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7EJ92_9PLAN)

HSP 1 Score: 71.2 bits (173), Expect = 6.110e-12
Identity = 36/105 (34.29%), Postives = 60/105 (57.14%), Query Frame = 1
Query:    1 TVLSDRDGLPMWHKDHMLVIGDAAHAMSPYSGQGVNTAMIDGFLIATMISKALARSPVNTISDSALQALFQKFEDVRKAPVASVVEKGRQAKRLM-GDGKIVNWI 312
            T   D   L  W+KD +L+IGDAAHA SPY+G G   A+ D   +A +++           SD +++++FQ+F+DVRK    +++++ R    +  G  ++ NWI
Sbjct:  258 TKAGDLLALTPWYKDRILLIGDAAHATSPYAGMGACAAIADAHFLAQLLA-----------SDQSIESVFQQFQDVRKPIADAIIKESRHGLEMSSGRSRLKNWI 351          
BLAST of mRNA_M-pyrifera_M_contig114172.2954.1 vs. uniprot
Match: A0A365Y3A9_9BACT (Monooxygenase n=2 Tax=Chitinophaga TaxID=79328 RepID=A0A365Y3A9_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 9.030e-12
Identity = 44/118 (37.29%), Postives = 63/118 (53.39%), Query Frame = 1
Query:    7 LSDRDGLPMWHKDHMLVIGDAAHAMSPYSGQGVNTAMIDGFLIATMISKALARSPVNTISDSALQALFQKFEDVRKAPVASVVEKGRQ---AKRLMG--DGKIVNWIYFATMKYFPAK 345
            +SD   LP WHKD +L+IGDAAHA+SP +GQG + A+ D   +A ++  A   S           A F+KFE+ RK  V  +V +GR+    K ++     KI  W+    +  F AK
Sbjct:  281 VSDIASLPTWHKDRVLLIGDAAHAVSPNAGQGASMALEDAMYLAMLLRDAGVGS---------YAAAFRKFENDRKPRVEKIVAEGRRRGATKTILKPWQAKIREWLMALLIPLFAAK 389          
BLAST of mRNA_M-pyrifera_M_contig114172.2954.1 vs. uniprot
Match: A0A2N8MC15_9HYPH (FAD_binding_3 domain-containing protein n=1 Tax=Beijerinckiaceae bacterium TaxID=1978229 RepID=A0A2N8MC15_9HYPH)

HSP 1 Score: 70.5 bits (171), Expect = 1.260e-11
Identity = 51/138 (36.96%), Postives = 73/138 (52.90%), Query Frame = 1
Query:    1 TVLSDRDGLPMWHKDHMLVIGDAAHAMSPYSGQGVNTAMIDGFLIATMISKALARSPVNTISDSALQALFQKFEDVRKA--PVASVVEKGRQAKRLMGDGKIVN------WIYFATMKYFPAKTLINLTFRGDRCNDP 390
            TV+ DR  LP+WHK  +L IGDAAHAMSP  G G+N A+ D    A ++  AL  S    +SD  L  + ++ E   K    +  V++K   ++ L G GKI        +IYF  ++  PA+ L+ L  R +R   P
Sbjct:  275 TVVVDR--LPLWHKPGLLCIGDAAHAMSPVGGVGINLAIQDAIAAANIL--ALPLSGEGPLSDQLLAQVQKRREWPTKVIQAIQVVIQKRIISRVLGGTGKIAPPRFLRLFIYFPILRRLPAR-LVGLGVRRERVTSP 407          
BLAST of mRNA_M-pyrifera_M_contig114172.2954.1 vs. uniprot
Match: A0A8J7MG53_9BACT (FAD-dependent monooxygenase n=1 Tax=Aureispira sp. TaxID=1872660 RepID=A0A8J7MG53_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 2.260e-11
Identity = 39/126 (30.95%), Postives = 58/126 (46.03%), Query Frame = 1
Query:   13 DRDGLPMWHKDHMLVIGDAAHAMSPYSGQGVNTAMIDGFLIATMISKALARSPVNTISDSALQALFQKFEDVRKAPVASVVEKGRQA-KRLMGDGKIVNWIYFATMKYFPAKTLINLTFRGDRCND 387
            DR     WH +  ++IGDAAH M+P+ G G NTA+ D F++  +I            S + ++ +F  FE  RK P+  +V+  R      +   K  NWI    M   P   L  +    D+ ND
Sbjct:  271 DRPPAKTWHSNRAILIGDAAHPMTPFLGAGANTAIADAFILGHLIK-----------SSTDIKTVFSTFEKRRKVPLEKMVKTARTVCDYSLSKSKWKNWIMLKGMAILPKFLLRRMILSADKIND 385          
BLAST of mRNA_M-pyrifera_M_contig114172.2954.1 vs. uniprot
Match: A0A7G8G4P7_9SYNE (FAD binding domain protein n=1 Tax=Synechococcus sp. ROS8604 TaxID=1442557 RepID=A0A7G8G4P7_9SYNE)

HSP 1 Score: 65.9 bits (159), Expect = 9.770e-11
Identity = 37/115 (32.17%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    1 TVLSDRDGLPMWHKDHMLVIGDAAHAMSPYSGQGVNTAMIDGFLIATMISKALARSPVNTISDSALQALFQKFEDVRKAPVASVVEKGRQAKRLMGDGKIVNWIYFATMKYFPAK 345
            T   D   L  W++D +L+IGDAAHA SPY+G G  +A+ D   +A +++           S  ++ A+FQ+F+ VRK    SV+++ R+   +   G +  W+     K  P K
Sbjct:   67 TQAGDLLALSPWYRDRVLMIGDAAHATSPYAGMGACSAIADAAFLADLMA-----------SGRSVPAIFQEFQVVRKHAADSVIKESRRGLDVSTYGDLKGWVRDWMFKNMPEK 170          
BLAST of mRNA_M-pyrifera_M_contig114172.2954.1 vs. uniprot
Match: Q0I9Q9_SYNS3 (FAD-dependent monooxygenase, putative n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=Q0I9Q9_SYNS3)

HSP 1 Score: 67.8 bits (164), Expect = 1.040e-10
Identity = 40/117 (34.19%), Postives = 59/117 (50.43%), Query Frame = 1
Query:    1 TVLSDRDGLPMWHKDHMLVIGDAAHAMSPYSGQGVNTAMIDGFLIATMISKALARSPVNTISDSALQALFQKFEDVRKAPVASVVEKGRQAKRLMGDGKIVNWIYFATMKYFPAKTL 351
            T   D   L  W++D +L+IGDAAHA SPY+G G  +A+ D  L+A +I+           S  ++ A+FQ F+ VRK    SV++  R+   L   G +  W+        P K L
Sbjct:  258 TQAGDLLALSPWYRDRVLMIGDAAHATSPYAGMGACSAIADASLLADLIA-----------SGRSVPAIFQDFQAVRKPAADSVIKDSRRGLDLSTCGDLKGWVRDWMFTNMPEKKL 363          
BLAST of mRNA_M-pyrifera_M_contig114172.2954.1 vs. uniprot
Match: A0A4U9VQH9_9SPHI (Salicylate hydroxylase n=1 Tax=Sphingobacterium thalpophilum TaxID=259 RepID=A0A4U9VQH9_9SPHI)

HSP 1 Score: 67.4 bits (163), Expect = 1.480e-10
Identity = 41/121 (33.88%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   25 LPMWHKDHMLVIGDAAHAMSPYSGQGVNTAMIDGFLIATMISKALARSPVNTISDSALQALFQKFEDVRKAPVASVVEKGRQAKRLMGDGKIVNWIYFATMKYFPAKTLINLTFRGDRCND 387
            LP W++D +L+IGDAAHA+SP SGQG + A+ D  L+A ++             + +L   F+KFED R+  V  +V +GR+     G+ K+V        + +  +  +NL   G   ND
Sbjct:  283 LPNWYRDRLLLIGDAAHAVSPNSGQGASLALEDAMLLAKLLR-----------DEKSLALAFRKFEDGRRPRVERIVREGRRR----GEDKLVVGPAMQLFREWMIRIFVNLF--GSNGND 386          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114172.2954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4M3H8_9EUKA5.170e-2137.01Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
UPI00037131441.360e-1240.00FAD-dependent monooxygenase n=1 Tax=Salsuginibacil... [more]
A0A815I0N0_9BILA1.370e-1236.73Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A2E7EJ92_9PLAN6.110e-1234.29Monooxygenase n=1 Tax=Planctomycetaceae bacterium ... [more]
A0A365Y3A9_9BACT9.030e-1237.29Monooxygenase n=2 Tax=Chitinophaga TaxID=79328 Rep... [more]
A0A2N8MC15_9HYPH1.260e-1136.96FAD_binding_3 domain-containing protein n=1 Tax=Be... [more]
A0A8J7MG53_9BACT2.260e-1130.95FAD-dependent monooxygenase n=1 Tax=Aureispira sp.... [more]
A0A7G8G4P7_9SYNE9.770e-1132.17FAD binding domain protein n=1 Tax=Synechococcus s... [more]
Q0I9Q9_SYNS31.040e-1034.19FAD-dependent monooxygenase, putative n=3 Tax=uncl... [more]
A0A4U9VQH9_9SPHI1.480e-1033.88Salicylate hydroxylase n=1 Tax=Sphingobacterium th... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114172contigM-pyrifera_M_contig114172:6..395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.9
Seed ortholog evalue1.8e-09
Seed eggNOG ortholog1123239.KB898633_gene3026
Preferred nameMA20_36880
Hectar predicted targeting categoryother localisation
EggNOG free text desc.FAD binding domain
EggNOG OGs1V6ZR@1239,4HJZV@91061,COG0654@1,COG0654@2
COG Functional cat.CH
Best tax levelBacilli
Best eggNOG OGNA|NA|NA
Exons1
Model size390
Cds size360
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.3852637-UTR-M-pyrifera_M_contig114172:5..351622815657.3852637-UTR-M-pyrifera_M_contig114172:5..35Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114172 6..35 +
1692277508.0056386-UTR-M-pyrifera_M_contig114172:5..351692277508.0056386-UTR-M-pyrifera_M_contig114172:5..35Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114172 6..35 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.4003103-CDS-M-pyrifera_M_contig114172:35..3951622815657.4003103-CDS-M-pyrifera_M_contig114172:35..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114172 36..395 +
1692277508.0183794-CDS-M-pyrifera_M_contig114172:35..3951692277508.0183794-CDS-M-pyrifera_M_contig114172:35..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114172 36..395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114172.2954.1prot_M-pyrifera_M_contig114172.2954.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114172 36..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114172.2954.1

>prot_M-pyrifera_M_contig114172.2954.1 ID=prot_M-pyrifera_M_contig114172.2954.1|Name=mRNA_M-pyrifera_M_contig114172.2954.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MWHKDHMLVIGDAAHAMSPYSGQGVNTAMIDGFLIATMISKALARSPVNT
ISDSALQALFQKFEDVRKAPVASVVEKGRQAKRLMGDGKIVNWIYFATMK
YFPAKTLINLTFRGDRCNDP
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mRNA from alignment at M-pyrifera_M_contig114172:6..395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114172.2954.1 ID=mRNA_M-pyrifera_M_contig114172.2954.1|Name=mRNA_M-pyrifera_M_contig114172.2954.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig114172:6..395+ (Macrocystis pyrifera P11B4 male)
ACTGTCCTGTCAGATAGAGATGGCCTGCCAATGTGGCACAAGGATCACAT GTTGGTGATTGGCGACGCAGCCCACGCTATGTCTCCTTACTCTGGCCAGG GGGTGAACACGGCCATGATCGACGGATTCCTCATTGCTACCATGATTTCC AAGGCCCTGGCGAGATCCCCTGTCAACACCATCTCTGATTCGGCATTGCA GGCCCTCTTCCAGAAGTTCGAAGACGTAAGGAAGGCACCGGTGGCCAGCG TCGTGGAGAAGGGCCGCCAGGCCAAGAGGCTCATGGGCGACGGCAAGATC GTCAACTGGATATACTTTGCTACGATGAAGTATTTCCCTGCCAAGACCCT CATCAACCTCACTTTCAGAGGAGACCGATGCAACGACCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114172:6..395+

>mRNA_M-pyrifera_M_contig114172.2954.1 ID=mRNA_M-pyrifera_M_contig114172.2954.1|Name=mRNA_M-pyrifera_M_contig114172.2954.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig114172:6..395+ (Macrocystis pyrifera P11B4 male)
ATGTGGCACAAGGATCACATGTTGGTGATTGGCGACGCAGCCCACGCTAT
GTCTCCTTACTCTGGCCAGGGGGTGAACACGGCCATGATCGACGGATTCC
TCATTGCTACCATGATTTCCAAGGCCCTGGCGAGATCCCCTGTCAACACC
ATCTCTGATTCGGCATTGCAGGCCCTCTTCCAGAAGTTCGAAGACGTAAG
GAAGGCACCGGTGGCCAGCGTCGTGGAGAAGGGCCGCCAGGCCAAGAGGC
TCATGGGCGACGGCAAGATCGTCAACTGGATATACTTTGCTACGATGAAG
TATTTCCCTGCCAAGACCCTCATCAACCTCACTTTCAGAGGAGACCGATG
CAACGACCCCATGTGGCACAAGGATCACATGTTGGTGATTGGCGACGCAG
CCCACGCTATGTCTCCTTACTCTGGCCAGGGGGTGAACACGGCCATGATC
GACGGATTCCTCATTGCTACCATGATTTCCAAGGCCCTGGCGAGATCCCC
TGTCAACACCATCTCTGATTCGGCATTGCAGGCCCTCTTCCAGAAGTTCG
AAGACGTAAGGAAGGCACCGGTGGCCAGCGTCGTGGAGAAGGGCCGCCAG
GCCAAGAGGCTCATGGGCGACGGCAAGATCGTCAACTGGATATACTTTGC
TACGATGAAGTATTTCCCTGCCAAGACCCTCATCAACCTCACTTTCAGAG
GAGACCGATGCAACGACCCC
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