mRNA_M-pyrifera_M_contig114169.2952.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114169.2952.1
Unique NamemRNA_M-pyrifera_M_contig114169.2952.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114169.2952.1 vs. uniprot
Match: A0A818TU73_9BILA (Hypothetical protein n=6 Tax=Adineta steineri TaxID=433720 RepID=A0A818TU73_9BILA)

HSP 1 Score: 62.4 bits (150), Expect = 5.180e-10
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 1
Query:    1 CTICEENKMDTVLVPCGHMCICHVCSGRMQASGHNLCPICRSPVVQWQLVY 153
            CT+C + K DTVL+PCGH+C+C+ C+  +   G   CPICR+ +     VY
Sbjct:  427 CTVCFDRKRDTVLIPCGHICLCYSCADELYQRGTRQCPICRATITSINKVY 477          
BLAST of mRNA_M-pyrifera_M_contig114169.2952.1 vs. uniprot
Match: F2DKV7_HORVV (Predicted protein n=3 Tax=Eukaryota TaxID=2759 RepID=F2DKV7_HORVV)

HSP 1 Score: 60.5 bits (145), Expect = 2.480e-9
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 1
Query:    1 CTICEENKMDTVLVPCGHMCICHVCSGRMQASGHNLCPICRSPVVQWQLVY 153
            CTIC +   DTVL+PCGH+C+C+ C+  +   G   CPICR+ +     VY
Sbjct:  423 CTICLDRIRDTVLIPCGHICLCYSCADELHQRGSRQCPICRATITSINRVY 473          
BLAST of mRNA_M-pyrifera_M_contig114169.2952.1 vs. uniprot
Match: A0A814TGJ0_9BILA (Hypothetical protein n=4 Tax=Rotaria sordida TaxID=392033 RepID=A0A814TGJ0_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 4.640e-9
Identity = 23/51 (45.10%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 CTICEENKMDTVLVPCGHMCICHVCSGRMQASGHNLCPICRSPVVQWQLVY 153
            CTIC ++  DTVL+PCGH+C+C++C+  +   G   CPICRS +     +Y
Sbjct:  496 CTICFDHVRDTVLIPCGHICLCYLCAKELIEHGTKQCPICRSSIKLINKIY 546          
BLAST of mRNA_M-pyrifera_M_contig114169.2952.1 vs. uniprot
Match: A0A819G522_9BILA (Hypothetical protein n=4 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A819G522_9BILA)

HSP 1 Score: 58.2 bits (139), Expect = 1.620e-8
Identity = 23/51 (45.10%), Postives = 33/51 (64.71%), Query Frame = 1
Query:    1 CTICEENKMDTVLVPCGHMCICHVCSGRMQASGHNLCPICRSPVVQWQLVY 153
            CTIC ++  DTVL+PCGH+C+C+ C+  +   G   CPICRS +     +Y
Sbjct:  418 CTICLDHFRDTVLIPCGHICLCYSCAKELIEHGTKQCPICRSSIKLINKIY 468          
BLAST of mRNA_M-pyrifera_M_contig114169.2952.1 vs. uniprot
Match: A0A816K5X1_9BILA (Hypothetical protein n=3 Tax=Rotaria TaxID=231623 RepID=A0A816K5X1_9BILA)

HSP 1 Score: 58.2 bits (139), Expect = 1.620e-8
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 1
Query:    1 CTICEENKMDTVLVPCGHMCICHVCSGRMQASGHNLCPICRSPVVQWQLVY 153
            CT+C ++  DTVL+PCGH+C+C+ C+  +   G   CPICR+ +     +Y
Sbjct:  427 CTVCFDHLRDTVLIPCGHICLCYTCAKELVEHGTKQCPICRTSIQLINKIY 477          
BLAST of mRNA_M-pyrifera_M_contig114169.2952.1 vs. uniprot
Match: A0A2P6NVE5_9EUKA (Serine/threonine protein kinase n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NVE5_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 2.190e-8
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1
Query:    1 CTICEENKMDTVLVPCGHMCICHVCSGRMQASGHNLCPICRSPV 132
            C +C E  MDTVL+PCGH+C+CH CS  M       CP+CRS +
Sbjct:  209 CKVCLERPMDTVLIPCGHICVCHQCSSNM-----GQCPMCRSVI 247          
BLAST of mRNA_M-pyrifera_M_contig114169.2952.1 vs. uniprot
Match: A0A077ZZE8_STYLE (Copine viii n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZZE8_STYLE)

HSP 1 Score: 57.8 bits (138), Expect = 2.220e-8
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1
Query:    1 CTICEENKMDTVLVPCGHMCICHVCSGRMQASGHNLCPICRSPVVQ 138
            C IC  NK +TVLVPCGH C+C  CS +++    N+CPICR  V Q
Sbjct:  729 CKICFSNKNNTVLVPCGHKCVCFECSSKIK----NICPICRKNVAQ 770          
BLAST of mRNA_M-pyrifera_M_contig114169.2952.1 vs. uniprot
Match: A0A814JWS7_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814JWS7_9BILA)

HSP 1 Score: 57.4 bits (137), Expect = 3.020e-8
Identity = 21/51 (41.18%), Postives = 31/51 (60.78%), Query Frame = 1
Query:    1 CTICEENKMDTVLVPCGHMCICHVCSGRMQASGHNLCPICRSPVVQWQLVY 153
            C +C +  +DTVL+PCGH+C+C  C+  M   G+  CPICR+       +Y
Sbjct:  404 CVVCLDRLIDTVLIPCGHLCLCFQCATAMHDKGNKTCPICRTTSTLCNRIY 454          
BLAST of mRNA_M-pyrifera_M_contig114169.2952.1 vs. uniprot
Match: A0A4Z1T8W4_GIAMU (RING finger domain-containing protein n=1 Tax=Giardia muris TaxID=5742 RepID=A0A4Z1T8W4_GIAMU)

HSP 1 Score: 55.1 bits (131), Expect = 3.720e-8
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1
Query:    1 CTICEENKMDTVLVPCGHMCICHVCSGRMQASGHNLCPICRSPV 132
            C IC  N  DT+L PCGH+C+C  C+GR+    +  CP CR+P+
Sbjct:   39 CVICLMNPKDTLLQPCGHLCVCSTCAGRIM---NQTCPFCRTPI 79          
BLAST of mRNA_M-pyrifera_M_contig114169.2952.1 vs. uniprot
Match: A0A139AV24_GONPJ (RING-type domain-containing protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AV24_GONPJ)

HSP 1 Score: 56.2 bits (134), Expect = 7.720e-8
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1
Query:    1 CTICEENKMDTVLVPCGHMCICHVCSGRMQASGHNLCPICRSPV 132
            C +C  NK+D+VLVPCGH  +CH C+ ++Q  G   CP+CR+ V
Sbjct:  379 CKVCFSNKVDSVLVPCGHAVLCHACAAKVQYEGIG-CPVCRAKV 421          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114169.2952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A818TU73_9BILA5.180e-1045.10Hypothetical protein n=6 Tax=Adineta steineri TaxI... [more]
F2DKV7_HORVV2.480e-945.10Predicted protein n=3 Tax=Eukaryota TaxID=2759 Rep... [more]
A0A814TGJ0_9BILA4.640e-945.10Hypothetical protein n=4 Tax=Rotaria sordida TaxID... [more]
A0A819G522_9BILA1.620e-845.10Hypothetical protein n=4 Tax=Rotaria sp. Silwood1 ... [more]
A0A816K5X1_9BILA1.620e-841.18Hypothetical protein n=3 Tax=Rotaria TaxID=231623 ... [more]
A0A2P6NVE5_9EUKA2.190e-852.27Serine/threonine protein kinase n=1 Tax=Planoproto... [more]
A0A077ZZE8_STYLE2.220e-854.35Copine viii n=1 Tax=Stylonychia lemnae TaxID=5949 ... [more]
A0A814JWS7_9BILA3.020e-841.18Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A4Z1T8W4_GIAMU3.720e-847.73RING finger domain-containing protein n=1 Tax=Giar... [more]
A0A139AV24_GONPJ7.720e-850.00RING-type domain-containing protein n=1 Tax=Gonapo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114169contigM-pyrifera_M_contig114169:296..454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size135
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.2411437-CDS-M-pyrifera_M_contig114169:295..4301622815657.2411437-CDS-M-pyrifera_M_contig114169:295..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114169 296..430 -
1692277507.9605525-CDS-M-pyrifera_M_contig114169:295..4301692277507.9605525-CDS-M-pyrifera_M_contig114169:295..430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114169 296..430 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.252466-UTR-M-pyrifera_M_contig114169:430..4541622815657.252466-UTR-M-pyrifera_M_contig114169:430..454Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114169 431..454 -
1692277507.9707637-UTR-M-pyrifera_M_contig114169:430..4541692277507.9707637-UTR-M-pyrifera_M_contig114169:430..454Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114169 431..454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114169.2952.1prot_M-pyrifera_M_contig114169.2952.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114169 296..430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114169.2952.1

>prot_M-pyrifera_M_contig114169.2952.1 ID=prot_M-pyrifera_M_contig114169.2952.1|Name=mRNA_M-pyrifera_M_contig114169.2952.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=45bp
MDTVLVPCGHMCICHVCSGRMQASGHNLCPICRSPVVQWQLVYR*
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mRNA from alignment at M-pyrifera_M_contig114169:296..454-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114169.2952.1 ID=mRNA_M-pyrifera_M_contig114169.2952.1|Name=mRNA_M-pyrifera_M_contig114169.2952.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig114169:296..454- (Macrocystis pyrifera P11B4 male)
TGCACGATTTGCGAGGAGAACAAGATGGACACGGTGCTGGTTCCGTGCGG CCACATGTGCATTTGCCACGTGTGCTCCGGCCGGATGCAAGCATCTGGAC ACAATCTCTGCCCCATCTGCCGCAGCCCGGTGGTGCAGTGGCAGCTAGTG TACCGATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114169:296..454-

>mRNA_M-pyrifera_M_contig114169.2952.1 ID=mRNA_M-pyrifera_M_contig114169.2952.1|Name=mRNA_M-pyrifera_M_contig114169.2952.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig114169:296..454- (Macrocystis pyrifera P11B4 male)
ATGGACACGGTGCTGGTTCCGTGCGGCCACATGTGCATTTGCCACGTGTG
CTCCGGCCGGATGCAAGCATCTGGACACAATCTCTGCCCCATCTGCCGCA
GCCCGGTGGTGCAGTGGCAGCTAGTGTACCGATAAATGGACACGGTGCTG
GTTCCGTGCGGCCACATGTGCATTTGCCACGTGTGCTCCGGCCGGATGCA
AGCATCTGGACACAATCTCTGCCCCATCTGCCGCAGCCCGGTGGTGCAGT
GGCAGCTAGTGTACCGATAA
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