mRNA_M-pyrifera_M_contig114166.2951.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114166.2951.1
Unique NamemRNA_M-pyrifera_M_contig114166.2951.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114166.2951.1 vs. uniprot
Match: A0A067CZA8_SAPPC (Acetylornithine transaminase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CZA8_SAPPC)

HSP 1 Score: 104 bits (259), Expect = 2.920e-24
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:   13 LFRNYNADGVRTESGLCFEGGEGCYLYTTDGRKLLDMGAGIAVTSLGHAHPQWVAAVAAQASTLAHVSNLYRTRAPLLLAKQLVDKSGFDKV 288
            + + YN DGVRT+ GL F  G+G YL+ + G+K LD  +GIAV +LGHA P+W AA+A QA+ + HVSNL+ +  PL LAK+LV+ S FDKV
Sbjct:   45 IIKTYNPDGVRTQKGLVFTHGKGPYLFDSHGKKYLDFCSGIAVNNLGHADPEWAAAIADQATKVCHVSNLFHSEPPLKLAKKLVEHSTFDKV 136
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BLAST of mRNA_M-pyrifera_M_contig114166.2951.1 vs. uniprot
Match: A0A5D6YLD3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YLD3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.380e-21
Identity = 48/96 (50.00%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:    1 DRTYLFRNYNADGVRTESGLCFEGGEGCYLYTTDGRKLLDMGAGIAVTSLGHAHPQWVAAVAAQASTLAHVSNLYRTRAPLLLAKQLVDKSGFDKV 288
            +  Y+ + YN DGVR E+GL F  G G YLY   GR+ LD  AGIAV+ LGH+   W  ++      + H SNL+ T+APL LAK LVD S FDKV
Sbjct:   37 ENKYMVKAYNTDGVRGEAGLLFTHGNGQYLYDAQGRQFLDFCAGIAVSGLGHSDTDWYKSLVEAGKGICHTSNLFHTKAPLQLAKTLVDNSCFDKV 132
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BLAST of mRNA_M-pyrifera_M_contig114166.2951.1 vs. uniprot
Match: A0A662X2N6_9STRA (Acetylornithine transaminase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X2N6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.090e-21
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 DRTYLFRNYNADGVRTESGLCFEGGEGCYLYTTDGRKLLDMGAGIAVTSLGHAHPQWVAAVAAQASTLAHVSNLYRTRAPLLLAKQLVDKSGFDKV 288
            ++ YL + YN +GVR E  L F  G+G YLY   GR+ LD  AGIAV+ LGH    W  ++   A  + HVSNL+ T+APL LAK LVD S FDKV
Sbjct:   38 EQKYLVKTYNPNGVRGEPNLVFTHGKGQYLYDEQGREFLDFYAGIAVSGLGHGDADWYNSLVENAKNVTHVSNLFHTKAPLQLAKTLVDNSRFDKV 133
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BLAST of mRNA_M-pyrifera_M_contig114166.2951.1 vs. uniprot
Match: A0A484DU44_BRELC (Acetylornithine transaminase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DU44_BRELC)

HSP 1 Score: 95.5 bits (236), Expect = 4.710e-21
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 DRTYLFRNYNADGVRTESGLCFEGGEGCYLYTTDGRKLLDMGAGIAVTSLGHAHPQWVAAVAAQASTLAHVSNLYRTRAPLLLAKQLVDKSGFDKV 288
            ++ YL   YN DGVR ESGL F  G+G  L+  +GR+ LD  AGIAV+ LGH    W  ++      + HVSNL+ T+APL LAK LVD S FDKV
Sbjct:   32 EKQYLASTYNPDGVRGESGLMFTHGKGSKLFDEEGREFLDFYAGIAVSGLGHGDEDWYQSLVDNGKKVTHVSNLFHTKAPLELAKTLVDNSCFDKV 127
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BLAST of mRNA_M-pyrifera_M_contig114166.2951.1 vs. uniprot
Match: A0A8K1FHN7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHN7_PYTOL)

HSP 1 Score: 94.7 bits (234), Expect = 9.230e-21
Identity = 49/96 (51.04%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    1 DRTYLFRNYNADGVRTESGLCFEGGEGCYLYTTDGRKLLDMGAGIAVTSLGHAHPQWVAAVAAQASTLAHVSNLYRTRAPLLLAKQLVDKSGFDKV 288
            +R YL   YN DGVR +  L F  G G YLY + G + LD  AGIAV+ LGHA   W   +   A  + H+SNL+ T+APL LAK LVD S FDKV
Sbjct:   37 ERKYLVGTYNQDGVRGQPDLVFTHGNGQYLYDSHGNQYLDFYAGIAVSGLGHADADWYKTLVENAKNICHMSNLFHTKAPLELAKTLVDNSCFDKV 132
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BLAST of mRNA_M-pyrifera_M_contig114166.2951.1 vs. uniprot
Match: K3W9M5_GLOUD (Acetylornithine transaminase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W9M5_GLOUD)

HSP 1 Score: 94.0 bits (232), Expect = 1.810e-20
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    1 DRTYLFRNYNADGVRTESGLCFEGGEGCYLYTTDGRKLLDMGAGIAVTSLGHAHPQWVAAVAAQASTLAHVSNLYRTRAPLLLAKQLVDKSGFDKV 288
            +  Y+ + YN DGVR E  L F  G+G YL+   GR+ LD  AGIAV+ LGH+   W  A+      + H SNL+ T+APL LAK LVD S FDKV
Sbjct:   43 ENKYMVKTYNTDGVRGEPNLLFTHGKGQYLFDAQGRQFLDFCAGIAVSGLGHSDADWYQALVDAGKNVCHTSNLFHTKAPLELAKTLVDNSCFDKV 138
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BLAST of mRNA_M-pyrifera_M_contig114166.2951.1 vs. uniprot
Match: A0A3M6VMT1_9STRA (Acetylornithine transaminase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMT1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.860e-20
Identity = 47/96 (48.96%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 DRTYLFRNYNADGVRTESGLCFEGGEGCYLYTTDGRKLLDMGAGIAVTSLGHAHPQWVAAVAAQASTLAHVSNLYRTRAPLLLAKQLVDKSGFDKV 288
            ++ YL + YN +GVR E+GL F  G+G  LY   GR+ LD  AGIAV+ LGH    W  ++      + HVSNL+ ++APL LAK LVD S FDKV
Sbjct:   33 EQKYLAKTYNGNGVRGEAGLVFSHGKGSKLYDEQGREFLDFYAGIAVSGLGHGDDDWYQSLVENGKNVTHVSNLFHSKAPLELAKTLVDNSCFDKV 128
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BLAST of mRNA_M-pyrifera_M_contig114166.2951.1 vs. uniprot
Match: M4BVA8_HYAAE (Acetylornithine transaminase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BVA8_HYAAE)

HSP 1 Score: 93.2 bits (230), Expect = 3.220e-20
Identity = 48/96 (50.00%), Postives = 58/96 (60.42%), Query Frame = 1 
Query:    1 DRTYLFRNYNADGVRTESGLCFEGGEGCYLYTTDGRKLLDMGAGIAVTSLGHAHPQWVAAVAAQASTLAHVSNLYRTRAPLLLAKQLVDKSGFDKV 288
            +  YL   YN DGVR E GL F  G+G  LY   GR+ LD  AGIAV+ LGH    W  ++      + HVSNL+ ++APL LAK LVD S FDKV
Sbjct:   30 EHQYLANTYNPDGVRGEKGLVFTHGKGSKLYDEQGREFLDFYAGIAVSGLGHGDADWYQSLVENGKKVTHVSNLFHSKAPLELAKTLVDNSCFDKV 125
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BLAST of mRNA_M-pyrifera_M_contig114166.2951.1 vs. uniprot
Match: A0A3R7HC21_9STRA (Acetylornithine transaminase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HC21_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.130e-19
Identity = 47/96 (48.96%), Postives = 59/96 (61.46%), Query Frame = 1 
Query:    1 DRTYLFRNYNADGVRTESGLCFEGGEGCYLYTTDGRKLLDMGAGIAVTSLGHAHPQWVAAVAAQASTLAHVSNLYRTRAPLLLAKQLVDKSGFDKV 288
            ++ YL + YN DGVR E GL F  G+G  LY   GR+ LD  AGIAV+ LGH       ++      + HVSNL+ ++APL LAK LVD S FDKV
Sbjct:   35 EQKYLVKTYNPDGVRGEPGLVFTHGKGSKLYDEQGREFLDFYAGIAVSGLGHGDEDVYQSLVENGKKVTHVSNLFHSKAPLELAKTLVDNSRFDKV 130
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BLAST of mRNA_M-pyrifera_M_contig114166.2951.1 vs. uniprot
Match: A0A516H7H8_9PROT (Acetylornithine aminotransferase n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A516H7H8_9PROT)

HSP 1 Score: 87.0 bits (214), Expect = 4.310e-18
Identity = 47/76 (61.84%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:   58 LCFEGGEGCYLYTTDGRKLLDMGAGIAVTSLGHAHPQWVAAVAAQASTLAHVSNLYRTRAPLLLAKQLVDKSGFDK 285
            L FE GEG YL+T DGR+ LD G+GIAVTSLGHAHP  V AV AQA+ L H SNL+R      LA++LVD S  DK
Sbjct:    9 LAFERGEGSYLFTADGRRYLDFGSGIAVTSLGHAHPHLVQAVQAQAAKLWHTSNLFRIPEQERLAQRLVDNSFADK 84
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114166.2951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067CZA8_SAPPC2.920e-2454.35Acetylornithine transaminase n=2 Tax=Saprolegnia T... [more]
A0A5D6YLD3_9STRA1.380e-2150.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A662X2N6_9STRA2.090e-2151.04Acetylornithine transaminase n=2 Tax=Nothophytopht... [more]
A0A484DU44_BRELC4.710e-2151.04Acetylornithine transaminase n=1 Tax=Bremia lactuc... [more]
A0A8K1FHN7_PYTOL9.230e-2151.04Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3W9M5_GLOUD1.810e-2048.96Acetylornithine transaminase n=1 Tax=Globisporangi... [more]
A0A3M6VMT1_9STRA1.860e-2048.96Acetylornithine transaminase n=1 Tax=Peronospora e... [more]
M4BVA8_HYAAE3.220e-2050.00Acetylornithine transaminase n=1 Tax=Hyaloperonosp... [more]
A0A3R7HC21_9STRA8.130e-1948.96Acetylornithine transaminase n=3 Tax=Phytophthora ... [more]
A0A516H7H8_9PROT4.310e-1861.84Acetylornithine aminotransferase n=4 Tax=Alphaprot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114166contigM-pyrifera_M_contig114166:188..547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1.8e-20
Seed eggNOG ortholog112098.XP_008605392.1
Preferred nameARG8
KEGG rclassRC00006,RC00062
KEGG koko:K00818,ko:K14799
KEGG ReactionR02283
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00028
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0003824,GO:0003992,GO:0004587,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006536,GO:0006538,GO:0006591,GO:0006592,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0007600,GO:0007601,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0016043,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0019752,GO:0019842,GO:0022607,GO:0022622,GO:0030170,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034214,GO:0036094,GO:0042450,GO:0042742,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0043649,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046395,GO:0046872,GO:0046914,GO:0048037,GO:0048364,GO:0048731,GO:0048856,GO:0050662,GO:0050877,GO:0050896,GO:0050953,GO:0051259,GO:0051704,GO:0051707,GO:0065003,GO:0070013,GO:0070279,GO:0071704,GO:0071840,GO:0080022,GO:0097159,GO:0098542,GO:0099402,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607
EggNOG free text desc.N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
EggNOG OGsCOG4992@1,KOG1401@2759
EC2.6.1.11
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03009
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.1993399-CDS-M-pyrifera_M_contig114166:187..3171622815657.1993399-CDS-M-pyrifera_M_contig114166:187..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114166 188..317 +
1692277507.9395783-CDS-M-pyrifera_M_contig114166:187..3171692277507.9395783-CDS-M-pyrifera_M_contig114166:187..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114166 188..317 +
1622815657.21181-CDS-M-pyrifera_M_contig114166:383..5471622815657.21181-CDS-M-pyrifera_M_contig114166:383..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114166 384..547 +
1692277507.9512222-CDS-M-pyrifera_M_contig114166:383..5471692277507.9512222-CDS-M-pyrifera_M_contig114166:383..547Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114166 384..547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114166.2951.1prot_M-pyrifera_M_contig114166.2951.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114166 188..547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114166.2951.1

>prot_M-pyrifera_M_contig114166.2951.1 ID=prot_M-pyrifera_M_contig114166.2951.1|Name=mRNA_M-pyrifera_M_contig114166.2951.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
DRTYLFRNYNADGVRTESGLCFEGGEGCYLYTTDGRKLLDMGAGIAVTSL
GHAHPQWVAAVAAQASTLAHVSNLYRTRAPLLLAKQLVDKSGFDKVR*
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mRNA from alignment at M-pyrifera_M_contig114166:188..547+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114166.2951.1 ID=mRNA_M-pyrifera_M_contig114166.2951.1|Name=mRNA_M-pyrifera_M_contig114166.2951.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig114166:188..547+ (Macrocystis pyrifera P11B4 male)
GACCGCACGTACCTGTTCCGAAACTACAACGCCGATGGAGTCCGCACAGA
GTCCGGCTTGTGTTTCGAGGGTGGGGAAGGGTGCTATCTGTACACCACCG
ACGGCAGGAAGCTGCTGGACATGGGTGCCGGTACGTGCCTCTCCCCGAAA
CTCGTCTGGCTTGGCCATTCACAGCTCACCCACAGCGACACCACAGGCAT
TGCGGTAACCTCGCTGGGCCACGCGCACCCGCAGTGGGTCGCCGCAGTAG
CCGCTCAGGCGTCCACACTGGCGCACGTGAGCAACCTGTATCGCACCCGC
GCGCCGCTGCTGCTGGCGAAGCAGCTGGTGGACAAGTCAGGCTTCGACAA
GGTGCGTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114166:188..547+

>mRNA_M-pyrifera_M_contig114166.2951.1 ID=mRNA_M-pyrifera_M_contig114166.2951.1|Name=mRNA_M-pyrifera_M_contig114166.2951.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig114166:188..547+ (Macrocystis pyrifera P11B4 male)
GACCGCACGTACCTGTTCCGAAACTACAACGCCGATGGAGTCCGCACAGA
GTCCGGCTTGTGTTTCGAGGGTGGGGAAGGGTGCTATCTGTACACCACCG
ACGGCAGGAAGCTGCTGGACATGGGTGCCGGACCGCACGTACCTGTTCCG
AAACTACAACGCCGATGGAGTCCGCACAGAGTCCGGCTTGTGTTTCGAGG
GTGGGGAAGGGTGCTATCTGTACACCACCGACGGCAGGAAGCTGCTGGAC
ATGGGTGCCGGCATTGCGGTAACCTCGCTGGGCCACGCGCACCCGCAGTG
GGTCGCCGCAGTAGCCGCTCAGGCGTCCACACTGGCGCACGTGAGCAACC
TGTATCGCACCCGCGCGCCGCTGCTGCTGGCGAAGCAGCTGGTGGACAAG
TCAGGCTTCGACAAGGTGCGTTGAGCATTGCGGTAACCTCGCTGGGCCAC
GCGCACCCGCAGTGGGTCGCCGCAGTAGCCGCTCAGGCGTCCACACTGGC
GCACGTGAGCAACCTGTATCGCACCCGCGCGCCGCTGCTGCTGGCGAAGC
AGCTGGTGGACAAGTCAGGCTTCGACAAGGTGCGTTGA
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