mRNA_M-pyrifera_M_contig114143.2944.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114143.2944.1
Unique NamemRNA_M-pyrifera_M_contig114143.2944.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114143.2944.1 vs. uniprot
Match: A0A7S4WHF5_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WHF5_9DINO)

HSP 1 Score: 62.0 bits (149), Expect = 1.160e-8
Identity = 45/137 (32.85%), Postives = 68/137 (49.64%), Query Frame = 1
Query:    1 AYVGEMLVRDVRWLLTNQPHLNTSVADSKIDRSRVELTFEASFSSYSLLLFQAYFLEKVALSMPIKELTDL--YDSRHGRGTDQMVSSLIVEFKTIKMMKSYDELYRRLGLKVPAD--MCAILRAAVAESTRRNYHG 399
            A + E  VR VRWLL ++P L  +V+       R+  +FE   +S  LL+FQA+FL +VA          L  YD + G+ T      L+   + I  +  +  +Y  LGL+ P +  +   L AAV +S +  YHG
Sbjct:  102 AVLAESHVRGVRWLLRDRPRLQCAVSAE----DRLRWSFEGRATSSRLLMFQAFFLRRVARPAGETLAASLARYDRQFGQPTAPQRERLVRACREILRVDGWPAVYEGLGLRAPEEQELAEELCAAVHQSLQLGYHG 234          
BLAST of mRNA_M-pyrifera_M_contig114143.2944.1 vs. uniprot
Match: L8GGI3_ACACA (Ubiquitinconjugating enzyme subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GGI3_ACACA)

HSP 1 Score: 61.6 bits (148), Expect = 2.060e-8
Identity = 42/137 (30.66%), Postives = 70/137 (51.09%), Query Frame = 1
Query:    4 YVGEMLVRDVRWLLTNQPHLNTSVADSKIDRSRVEL--TFEASFSSYSLLLFQAYFLEKVAL--SMPIKELTDLYDSRHGRGTDQMVSSLIVEFKTIKMMKSYDELYRRLGLKVPA--DMCAILRAAVAESTRRNYH 396
            ++GE+ VR+VRW+L + PHL          +S + +  +F  +  S  L++FQ YFL+ +    +   ++    Y    GR T  M + L    K I  + S+DE + R+ +   +   + A L +A+AES  RNYH
Sbjct:  394 FLGELFVRNVRWILQDAPHLAHIHTGRGGGQSALMIDDSFTCTLVSRRLVMFQVYFLKNIGRPNNQSWRDSLTTYHRTMGRPTHSMKAHLHAASKAIMAVASWDEYFDRIWMPRMSGPQLTARLGSAIAESAARNYH 530          
BLAST of mRNA_M-pyrifera_M_contig114143.2944.1 vs. uniprot
Match: A0A812U5T9_SYMPI (UBC5B protein (Fragment) n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812U5T9_SYMPI)

HSP 1 Score: 61.2 bits (147), Expect = 2.740e-8
Identity = 40/134 (29.85%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   13 EMLVRDVRWLLTNQPHLNTSVADSKIDRSRVELTFEASFSSYSLLLFQAYFLEKVALSMPIKELTDL----YDSRHGRGTDQMVSSLIVEFKTIKMMKSYDELYRRLGLK--VPADMCAILRAAVAESTRRNYH 396
            E+  R+V W+L   PHL   ++D+ + R R+  TF+A+  S  L++F A+FL KVA   P  + +D     Y+   G      + ++    +TI  + S++  +  LG++   P  +C  LR +V  S ++ YH
Sbjct:  396 EVFDRNVLWVLKKYPHL-AQLSDAGVSRERLRATFQAALVSMRLIMFNAWFLNKVA--KPSADTSDSALARYERTKGVPPRHQIEAVHRAVRTICEVDSWEAYFDSLGVERVKPEQLCNWLRQSVRNSAQKGYH 526          
BLAST of mRNA_M-pyrifera_M_contig114143.2944.1 vs. uniprot
Match: A0A370TTC8_9HELO (UBC core domain-containing protein n=1 Tax=Venustampulla echinocandica TaxID=2656787 RepID=A0A370TTC8_9HELO)

HSP 1 Score: 58.2 bits (139), Expect = 3.330e-7
Identity = 43/138 (31.16%), Postives = 68/138 (49.28%), Query Frame = 1
Query:    7 VGEMLVRDVRWLL----TNQPHLNTSVADSKIDRSRVELTFEASFSSYSLLLFQAYFLEKVALSMPIKELTDLYDS---RHGRGTDQMVSSLIVEFKTIKMMKSYDELYRRLGLKVP--ADMCAILRAAVAESTRRNY 393
            + E + R+V W+L     N P L+  +  ++    R++ TF+AS +SY LL+F   F  K A+  P K LT L D    RHG         L    K I  ++S+   +R + L+ P  A   A L++ + ES ++ Y
Sbjct:  476 IKETITRNVVWMLDKRGANMPELSY-IEPNEGSNYRLQQTFQASKTSYRLLMFLNLF-RKTAVGHPRKPLTQLRDEAFIRHGAPPMGSAKGLADSIKRIHEVESFPAFFRAMDLETPQEAQFTAFLKSTIVESVKKGY 611          
BLAST of mRNA_M-pyrifera_M_contig114143.2944.1 vs. uniprot
Match: A0A8H4QVP5_9AGAR (UBC core domain-containing protein n=1 Tax=Agrocybe pediades TaxID=84607 RepID=A0A8H4QVP5_9AGAR)

HSP 1 Score: 58.2 bits (139), Expect = 3.360e-7
Identity = 44/137 (32.12%), Postives = 70/137 (51.09%), Query Frame = 1
Query:    4 YVGEMLVRDVRWLLTNQPHLNT-SVADSKIDRSRVELTFEASFSSYSLLLFQAYFLEKVALSMPIKELTDLYDSRHGRGTDQMVSSLIVEFKTIKMMKSYDELYRRL----GLKVP-ADMCAILRAAVAESTRRNYH 396
            ++ E + R+VRW L   P L    V +SK    R+  TF AS +S+ L++FQ  FL++  +      L+ L D  +G    ++   ++ E K I  + ++ E +RR+    GL +  A  C +LRA V  S   NYH
Sbjct:  566 FLEEAITRNVRWALAAVPELEVMEVGESKF---RLSNTFNASKTSFRLMMFQITFLDEF-VGTYASNLSKL-DDNYGFVDKELPERMVAEVKKIYKVDNWTEFFRRVRFTQGLSLSNAQFCDMLRATVKRSVAFNYH 697          
BLAST of mRNA_M-pyrifera_M_contig114143.2944.1 vs. uniprot
Match: A0A066X529_COLSU (F-box domain-containing protein n=1 Tax=Colletotrichum sublineola TaxID=1173701 RepID=A0A066X529_COLSU)

HSP 1 Score: 56.6 bits (135), Expect = 1.140e-6
Identity = 43/141 (30.50%), Postives = 68/141 (48.23%), Query Frame = 1
Query:    1 AYVGEMLVRDVRWLL----TNQPHLNTSVADSKIDRSRVELTFEASFSSYSLLLFQAYFLEKVALSMPIKELTDLYDS---RHGRGTDQMVSSLIVEFKTIKMMKSYDELYRRLG---LKVPADMCAILRAAVAESTRRNY 393
            A + E + R+V W+L     N P L+    D ++   R++ TFEAS +SY LL+F   F  ++A     K L  + D    RHG         L  E + +  + ++   +R +G   L  P +  ++LRA V ES +R Y
Sbjct:  441 AIITEAITRNVVWMLDKTGANMPELSYLEPD-RVSGYRLKKTFEASRTSYRLLMFSELF-RRIARPSRDKTLVQVRDELFDRHGAPPPGAALQLSSEVRRLHDVDNFPHFFREMGIMNLPTPENFTSVLRACVRESMQRGY 579          
BLAST of mRNA_M-pyrifera_M_contig114143.2944.1 vs. uniprot
Match: A0A3D8S3Z4_9HELO (UBC core domain-containing protein n=1 Tax=Coleophoma crateriformis TaxID=565419 RepID=A0A3D8S3Z4_9HELO)

HSP 1 Score: 56.6 bits (135), Expect = 1.150e-6
Identity = 41/136 (30.15%), Postives = 63/136 (46.32%), Query Frame = 1
Query:    1 AYVGEMLVRDVRWLLTNQPHLNTSVADSKIDRSRVELTFEASFSSYSLLLFQAYFLEKVALSMPIKELTDLYDS---RHGRGTDQMVSSLIVEFKTIKMMKSYDELYRRLGLKVPAD--MCAILRAAVAESTRRNY 393
            + + E + R+V W+L ++P L+     S +   R+E TFEAS +SY LL+F   F  + A+  P K L  L D    RHG         L    KTI  + ++ +  R +G+  P        LR  +  S  + Y
Sbjct:  483 SIIKEAVTRNVVWMLESRPELSY-YEPSAVSPYRLEKTFEASTTSYRLLMFLNLF-RRTAVGSPRKSLIQLRDETFQRHGAPPRGSAKGLADAIKTIHSVNNFPDFLRTMGIAPPTAEWFTGFLRECIKSSMAKGY 616          
BLAST of mRNA_M-pyrifera_M_contig114143.2944.1 vs. uniprot
Match: A0A1D9QG25_SCLS1 (Uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) TaxID=665079 RepID=A0A1D9QG25_SCLS1)

HSP 1 Score: 56.2 bits (134), Expect = 1.550e-6
Identity = 41/134 (30.60%), Postives = 68/134 (50.75%), Query Frame = 1
Query:    7 VGEMLVRDVRWLLTNQPHLNTSVADSKIDRSRVELTFEASFSSYSLLLFQAYFLEKVALSMPIKELTDLYDS---RHGRGTDQMVSSLIVEFKTIKMMKSYDELYRRLGLKVPAD--MCAILRAAVAESTRRNY 393
            + E + R+V W+L  QP L+  +  S++ + R+E TFEAS +SY +L+F   F +  A+  P K L+ L +    RHG         L    K I ++ S+ + +R +G+ V  D      LR  + +S  + Y
Sbjct:  444 IKEAITRNVVWMLGEQPGLSY-IEPSEVSQYRLEKTFEASKTSYRILMFLKIF-KTTAIGKPKKPLSQLANEAFKRHGAPPRGSARYLADWTKRIHLIASFPDFFRVMGMGVRQDSWFTNFLRECINDSIEKGY 575          
BLAST of mRNA_M-pyrifera_M_contig114143.2944.1 vs. uniprot
Match: A0A4U6XKM4_9PEZI (UBC core domain-containing protein n=1 Tax=Colletotrichum tanaceti TaxID=1306861 RepID=A0A4U6XKM4_9PEZI)

HSP 1 Score: 55.5 bits (132), Expect = 2.870e-6
Identity = 42/140 (30.00%), Postives = 69/140 (49.29%), Query Frame = 1
Query:    1 AYVGEMLVRDVRWLL----TNQPHLNTSVADSKIDRSRVELTFEASFSSYSLLLFQAYF--LEKVALSMPIKELTDLYDSRHGRGTDQMVSSLIVEFKTIKMMKSYDELYRRLGL-KVPAD--MCAILRAAVAESTRRNY 393
            A + E + R+V W+L     N P L+    D K+   R++ TFEAS +SY LL+F   F  + + +    +++L D    RHG         L  E + +  + ++   +R +G+  VP      ++LR +V ES RR Y
Sbjct:  430 AIITEAITRNVVWMLDRRGANMPELSYLEPD-KVSGYRLKKTFEASRTSYRLLMFSELFRRIARPSADTSLEQLRDELFDRHGAPPPGAALRLSSEVRRLHDVDNFPHFFREMGITNVPTAERFTSVLRDSVRESMRRGY 568          
BLAST of mRNA_M-pyrifera_M_contig114143.2944.1 vs. uniprot
Match: A0A3D8R7C0_9HELO (UBC core domain-containing protein n=1 Tax=Coleophoma cylindrospora TaxID=1849047 RepID=A0A3D8R7C0_9HELO)

HSP 1 Score: 55.1 bits (131), Expect = 3.960e-6
Identity = 41/136 (30.15%), Postives = 62/136 (45.59%), Query Frame = 1
Query:    1 AYVGEMLVRDVRWLLTNQPHLNTSVADSKIDRSRVELTFEASFSSYSLLLFQAYFLEKVALSMPIKELTDLYDS---RHGRGTDQMVSSLIVEFKTIKMMKSYDELYRRLGLKVPAD--MCAILRAAVAESTRRNY 393
            + + E + R+V W+L + P L+     S +   R++ TFEAS +SY LL+F   F  + A+  P K L  L D    RHG         L    KTI  + S+    R +G+  P      + LR  +  S  + Y
Sbjct:  483 SIIKEAVTRNVVWMLESHPELSY-YEPSAVSPYRLKKTFEASTTSYRLLMFLNLF-RRTAVGSPRKSLIQLRDEAFQRHGAPPRGSAKGLANAIKTIHSVNSFPAFLRTMGIAPPTAEWFTSFLRECIKSSMAKGY 616          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114143.2944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A7S4WHF5_9DINO1.160e-832.85Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
L8GGI3_ACACA2.060e-830.66Ubiquitinconjugating enzyme subfamily protein n=1 ... [more]
A0A812U5T9_SYMPI2.740e-829.85UBC5B protein (Fragment) n=1 Tax=Symbiodinium pilo... [more]
A0A370TTC8_9HELO3.330e-731.16UBC core domain-containing protein n=1 Tax=Venusta... [more]
A0A8H4QVP5_9AGAR3.360e-732.12UBC core domain-containing protein n=1 Tax=Agrocyb... [more]
A0A066X529_COLSU1.140e-630.50F-box domain-containing protein n=1 Tax=Colletotri... [more]
A0A3D8S3Z4_9HELO1.150e-630.15UBC core domain-containing protein n=1 Tax=Coleoph... [more]
A0A1D9QG25_SCLS11.550e-630.60Uncharacterized protein n=1 Tax=Sclerotinia sclero... [more]
A0A4U6XKM4_9PEZI2.870e-630.00UBC core domain-containing protein n=1 Tax=Colleto... [more]
A0A3D8R7C0_9HELO3.960e-630.15UBC core domain-containing protein n=1 Tax=Coleoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114143contigM-pyrifera_M_contig114143:25..429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size390
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.836287-CDS-M-pyrifera_M_contig114143:24..4141622815656.836287-CDS-M-pyrifera_M_contig114143:24..414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114143 25..414 -
1692277507.7746701-CDS-M-pyrifera_M_contig114143:24..4141692277507.7746701-CDS-M-pyrifera_M_contig114143:24..414Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114143 25..414 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.8494787-UTR-M-pyrifera_M_contig114143:414..4291622815656.8494787-UTR-M-pyrifera_M_contig114143:414..429Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114143 415..429 -
1692277507.7829852-UTR-M-pyrifera_M_contig114143:414..4291692277507.7829852-UTR-M-pyrifera_M_contig114143:414..429Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114143 415..429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114143.2944.1prot_M-pyrifera_M_contig114143.2944.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114143 25..414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114143.2944.1

>prot_M-pyrifera_M_contig114143.2944.1 ID=prot_M-pyrifera_M_contig114143.2944.1|Name=mRNA_M-pyrifera_M_contig114143.2944.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=130bp
MLVRDVRWLLTNQPHLNTSVADSKIDRSRVELTFEASFSSYSLLLFQAYF
LEKVALSMPIKELTDLYDSRHGRGTDQMVSSLIVEFKTIKMMKSYDELYR
RLGLKVPADMCAILRAAVAESTRRNYHGKR
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mRNA from alignment at M-pyrifera_M_contig114143:25..429-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114143.2944.1 ID=mRNA_M-pyrifera_M_contig114143.2944.1|Name=mRNA_M-pyrifera_M_contig114143.2944.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig114143:25..429- (Macrocystis pyrifera P11B4 male)
GCGTACGTGGGGGAGATGCTGGTGCGCGACGTGCGCTGGCTGCTCACGAA CCAGCCGCACCTCAACACTTCGGTGGCGGACTCGAAGATCGACCGCAGCC GCGTGGAGCTGACCTTCGAGGCGTCGTTCTCCAGCTACAGCCTCCTGCTG TTCCAGGCGTACTTCCTCGAGAAGGTGGCCCTCTCCATGCCCATCAAGGA GCTGACAGATCTCTACGACTCTCGGCACGGCAGAGGCACCGACCAGATGG TCTCCAGCCTCATCGTCGAGTTCAAGACCATCAAGATGATGAAGAGCTAC GACGAACTCTACCGCAGGCTGGGCCTCAAGGTGCCTGCCGACATGTGCGC CATCCTCCGCGCTGCTGTGGCCGAGTCTACCAGGCGCAACTACCACGGCA AGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114143:25..429-

>mRNA_M-pyrifera_M_contig114143.2944.1 ID=mRNA_M-pyrifera_M_contig114143.2944.1|Name=mRNA_M-pyrifera_M_contig114143.2944.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=780bp|location=Sequence derived from alignment at M-pyrifera_M_contig114143:25..429- (Macrocystis pyrifera P11B4 male)
ATGCTGGTGCGCGACGTGCGCTGGCTGCTCACGAACCAGCCGCACCTCAA
CACTTCGGTGGCGGACTCGAAGATCGACCGCAGCCGCGTGGAGCTGACCT
TCGAGGCGTCGTTCTCCAGCTACAGCCTCCTGCTGTTCCAGGCGTACTTC
CTCGAGAAGGTGGCCCTCTCCATGCCCATCAAGGAGCTGACAGATCTCTA
CGACTCTCGGCACGGCAGAGGCACCGACCAGATGGTCTCCAGCCTCATCG
TCGAGTTCAAGACCATCAAGATGATGAAGAGCTACGACGAACTCTACCGC
AGGCTGGGCCTCAAGGTGCCTGCCGACATGTGCGCCATCCTCCGCGCTGC
TGTGGCCGAGTCTACCAGGCGCAACTACCACGGCAAGCGCATGCTGGTGC
GCGACGTGCGCTGGCTGCTCACGAACCAGCCGCACCTCAACACTTCGGTG
GCGGACTCGAAGATCGACCGCAGCCGCGTGGAGCTGACCTTCGAGGCGTC
GTTCTCCAGCTACAGCCTCCTGCTGTTCCAGGCGTACTTCCTCGAGAAGG
TGGCCCTCTCCATGCCCATCAAGGAGCTGACAGATCTCTACGACTCTCGG
CACGGCAGAGGCACCGACCAGATGGTCTCCAGCCTCATCGTCGAGTTCAA
GACCATCAAGATGATGAAGAGCTACGACGAACTCTACCGCAGGCTGGGCC
TCAAGGTGCCTGCCGACATGTGCGCCATCCTCCGCGCTGCTGTGGCCGAG
TCTACCAGGCGCAACTACCACGGCAAGCGC
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