mRNA_M-pyrifera_M_contig114142.2943.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114142.2943.1
Unique NamemRNA_M-pyrifera_M_contig114142.2943.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114142.2943.1 vs. uniprot
Match: A0A1Z9XL29_9ALTE (Uncharacterized protein n=1 Tax=Alteromonas sp. TMED35 TaxID=1986603 RepID=A0A1Z9XL29_9ALTE)

HSP 1 Score: 54.3 bits (129), Expect = 1.090e-6
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:   46 PKDKYCVIASTAPRVILLLISSEVSQLKRQQP-DQWHSQVVIDKASHPFLKRDSYIDC 216
            PKDK+ V+AS  PR+++LLI+++++Q   QQ  DQ+H  V + +A H FL  DSY +C
Sbjct:   32 PKDKFLVVASLEPRLLVLLINTKINQFYVQQGLDQFH--VPVPEAEHNFLTHDSYTNC 87
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BLAST of mRNA_M-pyrifera_M_contig114142.2943.1 vs. uniprot
Match: UPI00166D7F44 (hypothetical protein n=1 Tax=Pseudoalteromonas profundi TaxID=1774956 RepID=UPI00166D7F44)

HSP 1 Score: 53.9 bits (128), Expect = 1.530e-6
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:   46 PKDKYCVIASTAPRVILLLISSEVSQLKRQQPDQWHSQVVIDKASHPFLKRDSYIDC 216
            PKDK+ V+AS  PR+++LLI+S+++Q   QQ    H  V + +A H FL  DSY +C
Sbjct:   32 PKDKFLVVASLEPRLLVLLINSQINQFYVQQGLD-HLHVPVPEAEHNFLTHDSYTNC 87
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BLAST of mRNA_M-pyrifera_M_contig114142.2943.1 vs. uniprot
Match: A0A395JN52_9GAMM (Uncharacterized protein n=2 Tax=Arenicella xantha TaxID=644221 RepID=A0A395JN52_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 2.990e-6
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   46 PKDKYCVIASTAPRVILLLISSEVSQ-LKRQQPDQWHSQVVIDKASHPFLKRDSYIDC 216
            PK K+ V+AS  PR+++L+I+SE++Q       DQ+H  V ID  SH FL  DSY +C
Sbjct:   32 PKHKFMVVASMEPRLLVLMINSEINQYFYMNNTDQFH--VEIDAESHAFLTHDSYANC 87
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BLAST of mRNA_M-pyrifera_M_contig114142.2943.1 vs. uniprot
Match: UPI000893CE48 (hypothetical protein n=1 Tax=Vibrio cholerae TaxID=666 RepID=UPI000893CE48)

HSP 1 Score: 53.1 bits (126), Expect = 2.990e-6
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:   46 PKDKYCVIASTAPRVILLLISSEVSQLKRQQP-DQWHSQVVIDKASHPFLKRDSYIDC 216
            PK+K+ V+AS  PR+++LLI+SE++Q    Q  DQ+H  V + +A H FL  DSY +C
Sbjct:   32 PKNKFLVVASLEPRLLVLLINSEINQFYVHQGLDQFH--VPVPEADHNFLTHDSYANC 87
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BLAST of mRNA_M-pyrifera_M_contig114142.2943.1 vs. uniprot
Match: A0A0P9YUQ7_PSESS (ATP-dependent DNA helicase domain protein n=2 Tax=Pseudomonas syringae group TaxID=136849 RepID=A0A0P9YUQ7_PSESS)

HSP 1 Score: 50.1 bits (118), Expect = 4.210e-5
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:   46 PKDKYCVIASTAPRVILLLISSEVSQLKRQQP-DQWHSQVVIDKASHPFLKRDSYIDCGDLF 228
            PK KY V+ ST PR+++L+++SE++Q    +  D++H  V++    H FLK DSY  C + F
Sbjct:   30 PKFKYLVVVSTEPRLLVLVVNSEINQFYIDRGLDKFH--VLVPVVEHDFLKHDSYTCCIEAF 89
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BLAST of mRNA_M-pyrifera_M_contig114142.2943.1 vs. uniprot
Match: UPI0011401A17 (hypothetical protein n=1 Tax=Pseudomonas mandelii TaxID=75612 RepID=UPI0011401A17)

HSP 1 Score: 49.7 bits (117), Expect = 5.630e-5
Identity = 25/60 (41.67%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:   46 PKDKYCVIASTAPRVILLLISSEVSQ---LKRQQPDQWHSQVVIDKASHPFLKRDSYIDC 216
            PK+KY ++ S +PR+++L+I+SE++Q   +K QQ  Q+H  V++ +A HPFL+ +S+  C
Sbjct:   28 PKNKYLLVVSLSPRLLVLVINSEINQFYVVKGQQ--QFH--VLVPQAEHPFLQHNSHACC 83
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114142.2943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A1Z9XL29_9ALTE1.090e-646.55Uncharacterized protein n=1 Tax=Alteromonas sp. TM... [more]
UPI00166D7F441.530e-645.61hypothetical protein n=1 Tax=Pseudoalteromonas pro... [more]
A0A395JN52_9GAMM2.990e-646.55Uncharacterized protein n=2 Tax=Arenicella xantha ... [more]
UPI000893CE482.990e-646.55hypothetical protein n=1 Tax=Vibrio cholerae TaxID... [more]
A0A0P9YUQ7_PSESS4.210e-540.32ATP-dependent DNA helicase domain protein n=2 Tax=... [more]
UPI0011401A175.630e-541.67hypothetical protein n=1 Tax=Pseudomonas mandelii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114142contigM-pyrifera_M_contig114142:159..515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.786456-CDS-M-pyrifera_M_contig114142:158..5151622815656.786456-CDS-M-pyrifera_M_contig114142:158..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114142 159..515 -
1692277507.7652876-CDS-M-pyrifera_M_contig114142:158..5151692277507.7652876-CDS-M-pyrifera_M_contig114142:158..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114142 159..515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114142.2943.1prot_M-pyrifera_M_contig114142.2943.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114142 159..515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114142.2943.1

>prot_M-pyrifera_M_contig114142.2943.1 ID=prot_M-pyrifera_M_contig114142.2943.1|Name=mRNA_M-pyrifera_M_contig114142.2943.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
PGDVARLYIPVLSGRPKDKYCVIASTAPRVILLLISSEVSQLKRQQPDQW
HSQVVIDKASHPFLKRDSYIDCGDLFGYPPGPGGLANDMNNDPSRMLGTL
SSDTLARVRAVVQRSRLLS
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mRNA from alignment at M-pyrifera_M_contig114142:159..515-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114142.2943.1 ID=mRNA_M-pyrifera_M_contig114142.2943.1|Name=mRNA_M-pyrifera_M_contig114142.2943.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig114142:159..515- (Macrocystis pyrifera P11B4 male)
CCGGGCGACGTGGCAAGATTGTACATCCCCGTTTTGTCCGGCCGCCCGAA
GGACAAATATTGTGTAATTGCCAGTACCGCACCGAGAGTCATTCTTTTAC
TTATCAGCTCCGAAGTAAGCCAGTTAAAGCGCCAACAGCCTGATCAATGG
CATAGCCAAGTCGTGATCGACAAAGCCTCGCATCCGTTTCTCAAACGAGA
TTCGTACATTGATTGCGGCGATCTGTTTGGTTACCCACCGGGACCCGGCG
GACTCGCGAACGATATGAACAACGACCCGAGCAGGATGCTTGGAACGCTT
TCGAGCGACACGCTCGCGCGGGTCCGAGCCGTCGTGCAGCGGAGCAGGCT
GTTATCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114142:159..515-

>mRNA_M-pyrifera_M_contig114142.2943.1 ID=mRNA_M-pyrifera_M_contig114142.2943.1|Name=mRNA_M-pyrifera_M_contig114142.2943.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig114142:159..515- (Macrocystis pyrifera P11B4 male)
CCGGGCGACGTGGCAAGATTGTACATCCCCGTTTTGTCCGGCCGCCCGAA
GGACAAATATTGTGTAATTGCCAGTACCGCACCGAGAGTCATTCTTTTAC
TTATCAGCTCCGAAGTAAGCCAGTTAAAGCGCCAACAGCCTGATCAATGG
CATAGCCAAGTCGTGATCGACAAAGCCTCGCATCCGTTTCTCAAACGAGA
TTCGTACATTGATTGCGGCGATCTGTTTGGTTACCCACCGGGACCCGGCG
GACTCGCGAACGATATGAACAACGACCCGAGCAGGATGCTTGGAACGCTT
TCGAGCGACACGCTCGCGCGGGTCCGAGCCGTCGTGCAGCGGAGCAGGCT
GTTATCGCCGGGCGACGTGGCAAGATTGTACATCCCCGTTTTGTCCGGCC
GCCCGAAGGACAAATATTGTGTAATTGCCAGTACCGCACCGAGAGTCATT
CTTTTACTTATCAGCTCCGAAGTAAGCCAGTTAAAGCGCCAACAGCCTGA
TCAATGGCATAGCCAAGTCGTGATCGACAAAGCCTCGCATCCGTTTCTCA
AACGAGATTCGTACATTGATTGCGGCGATCTGTTTGGTTACCCACCGGGA
CCCGGCGGACTCGCGAACGATATGAACAACGACCCGAGCAGGATGCTTGG
AACGCTTTCGAGCGACACGCTCGCGCGGGTCCGAGCCGTCGTGCAGCGGA
GCAGGCTGTTATCG
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