mRNA_M-pyrifera_M_contig114092.2935.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114092.2935.1
Unique NamemRNA_M-pyrifera_M_contig114092.2935.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114092.2935.1 vs. uniprot
Match: A0A6H5L4M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 4.860e-20
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:   37 PSCDEDECPHTNSSGFRGRVCDPSCADGIPYGTNGCGAREGRHGPNCRVCYNDVDRAVANDDPANRSIMCDTLLPVE 267
            P C    C +T+  G +GRVCD +C+    YGT GCGA++G +G +CRVCYN+VDRA+  D P NR+IMC T++PV+
Sbjct:  419 PGCSS-RCTYTSKDGTKGRVCDSNCSTPNVYGTKGCGAKQGIYGADCRVCYNNVDRALKQDSPDNRAIMCSTMMPVD 494
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BLAST of mRNA_M-pyrifera_M_contig114092.2935.1 vs. uniprot
Match: D7FI39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI39_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.110e-18
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:   37 PSCDEDECPHTNSSGFRGRVCDPSCADGIPYGTNGCGAREGRHGPNCRVCYNDVDRAVANDDPANRSIMCDTLLPVE 267
            P C    C +T+  G +GRVCD +C+    YGT GC A++G +G +CRVCYN+VDRA+  D P NR+IMC T+ PV+
Sbjct:  563 PGCSS-RCTYTSKDGTKGRVCDSNCSSPNVYGTKGCNAKQGIYGADCRVCYNNVDRALKQDSPDNRAIMCSTVKPVD 638
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BLAST of mRNA_M-pyrifera_M_contig114092.2935.1 vs. uniprot
Match: A0A6H5JGJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ2_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.640e-12
Identity = 35/77 (45.45%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:   37 PSCDEDECPHTNSSGFRGRVCDPSCADGIPYGTNGCGAREGRHGPNCRVCYNDVDRAVANDDPANRSIMCDTLLPVE 267
            PS   D C +T++ G  G            YG  GC   +G++G NCR C+NDVD A+  D   NRSIMCDTLLPV+
Sbjct:  316 PSDCNDSCEYTSNDGTTGXXXXXXXXXXXXYGFFGCDTNDGQYGGNCRYCFNDVDSALEFDAQDNRSIMCDTLLPVD 392
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114092.2935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4M7_9PHAE4.860e-2051.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI39_ECTSI1.110e-1850.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGJ2_9PHAE4.640e-1245.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114092contigM-pyrifera_M_contig114092:19..537 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue8.4e-20
Seed eggNOG ortholog2880.D8LTU7
Hectar predicted targeting categoryother localisation
EggNOG OGs2EPZM@1,2ST37@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.1889822-CDS-M-pyrifera_M_contig114092:18..2601622815656.1889822-CDS-M-pyrifera_M_contig114092:18..260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114092 19..260 +
1692277507.4212844-CDS-M-pyrifera_M_contig114092:18..2601692277507.4212844-CDS-M-pyrifera_M_contig114092:18..260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114092 19..260 +
1622815656.2006915-CDS-M-pyrifera_M_contig114092:509..5371622815656.2006915-CDS-M-pyrifera_M_contig114092:509..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114092 510..537 +
1692277507.4320834-CDS-M-pyrifera_M_contig114092:509..5371692277507.4320834-CDS-M-pyrifera_M_contig114092:509..537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114092 510..537 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114092.2935.1prot_M-pyrifera_M_contig114092.2935.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114092 19..537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114092.2935.1

>prot_M-pyrifera_M_contig114092.2935.1 ID=prot_M-pyrifera_M_contig114092.2935.1|Name=mRNA_M-pyrifera_M_contig114092.2935.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
CDTLLPVETVEPPSCDEDECPHTNSSGFRGRVCDPSCADGIPYGTNGCGA
REGRHGPNCRVCYNDVDRAVANDDPANRSIMCDTLLPVET
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mRNA from alignment at M-pyrifera_M_contig114092:19..537+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114092.2935.1 ID=mRNA_M-pyrifera_M_contig114092.2935.1|Name=mRNA_M-pyrifera_M_contig114092.2935.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=519bp|location=Sequence derived from alignment at M-pyrifera_M_contig114092:19..537+ (Macrocystis pyrifera P11B4 male)
TGTGATACGTTGTTGCCGGTCGAGACTGTCGAGCCACCCAGCTGTGATGA
GGACGAATGCCCACACACCAACAGCAGCGGCTTCAGGGGGCGAGTGTGCG
ACCCTTCGTGCGCCGACGGAATTCCGTACGGCACCAATGGTTGTGGTGCC
AGGGAAGGGCGACACGGACCAAACTGTCGTGTTTGTTACAACGACGTGGA
CAGAGCCGTGGCCAACGATGACCCCGCCAATCGTTCGATCATGTGAGTCG
AGGATTGTTACGTACCATACTGCGTGCACCAATCATTGTGTTTCATGTGT
GCACACTGTACTACGCAAGTTCAACCCTTCTCGTTTAGGTTATTGCAGAC
ACTAAGGCATACCCTATTTGTTGTATCAGCGATCAAACGTTTAATGCTGC
AAGGTCTGAGGATGACACGATCTATCCCATGGCCTTACATCTCCATGTGT
TACCAAGTTGAACGTGTTCACTTCGCTCAACCTCTGTAAAGGTGTGATAC
GTTGTTGCCGGTCGAGACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114092:19..537+

>mRNA_M-pyrifera_M_contig114092.2935.1 ID=mRNA_M-pyrifera_M_contig114092.2935.1|Name=mRNA_M-pyrifera_M_contig114092.2935.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig114092:19..537+ (Macrocystis pyrifera P11B4 male)
TGTGATACGTTGTTGCCGGTCGAGACTGTCGAGCCACCCAGCTGTGATGA
GGACGAATGCCCACACACCAACAGCAGCGGCTTCAGGGGGCGAGTGTGCG
ACCCTTCGTGCGCCGACGGAATTCCGTACGGCACCAATGGTTGTGGTGCC
AGGGAAGGGCGACACGGACCAAACTGTCGTGTTTGTTACAACGACGTGGA
CAGAGCCGTGGCCAACGATGACCCCGCCAATCGTTCGATCATTGTGATAC
GTTGTTGCCGGTCGAGACTGTCGAGCCACCCAGCTGTGATGAGGACGAAT
GCCCACACACCAACAGCAGCGGCTTCAGGGGGCGAGTGTGCGACCCTTCG
TGCGCCGACGGAATTCCGTACGGCACCAATGGTTGTGGTGCCAGGGAAGG
GCGACACGGACCAAACTGTCGTGTTTGTTACAACGACGTGGACAGAGCCG
TGGCCAACGATGACCCCGCCAATCGTTCGATCATGTGTGATACGTTGTTG
CCGGTCGAGACTGTGTGATACGTTGTTGCCGGTCGAGACT
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