mRNA_M-pyrifera_M_contig114061.2931.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114061.2931.1
Unique NamemRNA_M-pyrifera_M_contig114061.2931.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114061.2931.1 vs. uniprot
Match: A0A5A8D5Q9_CAFRO (Non-specific serine/threonine protein kinase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D5Q9_CAFRO)

HSP 1 Score: 199 bits (505), Expect = 2.010e-56
Identity = 99/173 (57.23%), Postives = 127/173 (73.41%), Query Frame = 1
Query:    1 LLRSHVLLLSFLGDDGWPAPRLHEAGLKGSRLSRCYEEVVWAMRRMWVDCKLVHADLSEFNLLWWKDQVWVIDVSQSVEADHPRALEFLRMDAVNVTHFFGRRKGLRVMSARELFEFVRHESLPDQEAEKAFLTKAWEKAKRRD-----PAAPESAEDRIWRQSDFVRTLADV 504
            LLR HVLL+ F+G DGWPAPRL +A L  S+ +  YE+VV AMR MW  C+LVHADLSE+NLLW + +V VIDVSQSVE+DHPRA++FLRMD  NVT++FGRR GLRVM+ RELF+FV H +LPD+ AE A+L   W + + R       +A + AE  ++ Q+   R+LADV
Sbjct:  374 LLRGHVLLMDFIGTDGWPAPRLRDAKLSPSKQASAYEQVVHAMRAMWERCRLVHADLSEYNLLWHEGRVVVIDVSQSVESDHPRAMDFLRMDCANVTYYFGRRCGLRVMTPRELFDFVVHPALPDKAAEDAYLAAVWSEVRSRQGGEVFTSAEDEAEHNVFMQAFIPRSLADV 546          
BLAST of mRNA_M-pyrifera_M_contig114061.2931.1 vs. uniprot
Match: A0A7S1C556_9STRA (Serine/threonine-protein kinase RIO1 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C556_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.040e-46
Identity = 87/170 (51.18%), Postives = 121/170 (71.18%), Query Frame = 1
Query:    1 LLRSHVLLLSFLGDDGWPAPRLHEAGLKGSRLSRCYEEVVWAMRRMWVDCKLVHADLSEFNLLWWKDQVWVIDVSQSVEADHPRALEFLRMDAVNVTHFFGRRKGLRVMSARELFEFVRHESLPDQEAEKAFLTKAWEKAKRR--DPAAPESAEDRIWRQSDFVRTLADV 504
            L+R++VL + F+G DGWPAPRL +A L   ++S  Y +VV  MRRM+   +LVHADLSE+N+LW + +V +IDVSQSVE+DHPRA++FLRMD  NVT FF R+K L  M+ RELF+FV H SLP +EAE+A+L +   +A+ R  +  A +     ++ QS   R+LAD+
Sbjct:  147 LVRANVLAMDFVGRDGWPAPRLKDAALSSGQVSSAYSQVVDLMRRMFQVTRLVHADLSEYNMLWQRGRVIIIDVSQSVESDHPRAMDFLRMDCQNVTDFFARKK-LATMTPRELFDFVTHLSLPTKEAEEAYLAEMSRRARDRPRNATAEDEVSHAVFMQSYIPRSLADI 315          
BLAST of mRNA_M-pyrifera_M_contig114061.2931.1 vs. uniprot
Match: B8BTF6_THAPS (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTF6_THAPS)

HSP 1 Score: 154 bits (389), Expect = 2.290e-43
Identity = 72/118 (61.02%), Postives = 91/118 (77.12%), Query Frame = 1
Query:    1 LLRSHVLLLSFLGDDGWPAPRLHEAGLKGSRLSRCYEEVVWAMRRMWVDCKLVHADLSEFNLLWWKDQVWVIDVSQSVEADHPRALEFLRMDAVNVTHFFGRRKGLRVMSARELFEFV 354
            LL+SHVL++ FLG++GWP+PR+ +AGL   RL   Y + V  MRRM+  CKLVH DLSE+NLLW K++V+VIDVSQSVE+DHP AL+FLR DA NV  FF +   L VM+ R+LFEFV
Sbjct:  165 LLKSHVLIMEFLGENGWPSPRIRDAGLSERRLREAYVQTVVIMRRMYQRCKLVHGDLSEYNLLWHKNEVYVIDVSQSVESDHPSALDFLRKDASNVNDFFRKNGNLNVMTTRQLFEFV 282          
BLAST of mRNA_M-pyrifera_M_contig114061.2931.1 vs. uniprot
Match: A0A0L0G3N3_9EUKA (Serine/threonine-protein kinase RIO1 n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G3N3_9EUKA)

HSP 1 Score: 156 bits (395), Expect = 6.650e-42
Identity = 85/169 (50.30%), Postives = 114/169 (67.46%), Query Frame = 1
Query:    1 LLRSHVLLLSFLGDDGWPAPRLHEAGLKGSRLSRCYEEVVWAMRRMWVDCKLVHADLSEFNLLWWKDQVWVIDVSQSVEADHPRALEFLRMDAVNVTHFFGRRKGLRVMSARELFEFVRHESLPDQEAEKAFLTKAWEK-AKRRDPAAPESAEDRIWRQSDFVRTLADV 504
            +LR HVL++ FLG DGW APRL +A +   R    Y + V  MR+M+  CKLVH DLSE+NLL+WK Q++ IDVSQSVE +HPRAL+FLR D  N+T FF ++ G+ VMS RELFEFV   +L D+  ++ +L KA EK A R D  A +   + +++ +   RTL DV
Sbjct:  258 MLRQHVLVMEFLGKDGWAAPRLKDATISADRHRSLYMQCVKDMRKMFHVCKLVHGDLSEYNLLYWKQQLYFIDVSQSVEHEHPRALDFLRKDCSNITAFF-KKNGVDVMSMRELFEFVTDPNLQDEHIDE-YLEKAQEKIAARGDETAEDKVAEAVFQHAYIPRTLDDV 424          
BLAST of mRNA_M-pyrifera_M_contig114061.2931.1 vs. uniprot
Match: A0A4S2N1V2_9PEZI (Serine/threonine-protein kinase RIO1 n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2N1V2_9PEZI)

HSP 1 Score: 154 bits (390), Expect = 2.290e-41
Identity = 81/169 (47.93%), Postives = 113/169 (66.86%), Query Frame = 1
Query:    4 LRSHVLLLSFLGDD-GWPAPRLHEAGLKGSR-LSRCYEEVVWAMRRMWVDCKLVHADLSEFNLLWWKDQVWVIDVSQSVEADHPRALEFLRMDAVNVTHFFGRRKGLRVMSARELFEFVRHESLPDQEAEKAFLTKAWEKAKRRDPAAPESAEDRIWRQSDFVRTLADV 504
            LR HVL++ FLGD  GWPAPRL +AG++G +   RCY E++  M RM+  C+LVHADLSE+N+L+W   +WVIDVSQSVE DHPR  EFLRMD  N+T FF RR+G+  +  + LFEF+   ++ +  AE+  L    E+  + +      A++ ++RQ+   RTL DV
Sbjct:  267 LRLHVLVMGFLGDKKGWPAPRLRDAGIQGEKEWERCYLEMLSIMWRMYSVCRLVHADLSEYNVLYWDGHLWVIDVSQSVELDHPRTFEFLRMDIKNITDFF-RRQGVETIGMKRLFEFLTERAIEEDWAEERIL----EELAKIEKGGETEADEEVFRQTYIPRTLEDV 430          
BLAST of mRNA_M-pyrifera_M_contig114061.2931.1 vs. uniprot
Match: A0A1S3HP94_LINUN (Serine/threonine-protein kinase RIO1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HP94_LINUN)

HSP 1 Score: 154 bits (390), Expect = 2.790e-41
Identity = 83/171 (48.54%), Postives = 118/171 (69.01%), Query Frame = 1
Query:    1 LLRSHVLLLSFLGDDGWPAPRLHEAGLKGSRLSRCYEEVVWAMRRMWVDCKLVHADLSEFNLLWWKDQVWVIDVSQSVEADHPRALEFLRMDAVNVTHFFGRRKGLRVMSARELFEFVRHESLPDQEAEKAFLTKAWEKAKRR---DPAAPESAEDRIWRQSDFVRTLADV 504
            LLRSHVL++SF+GD+GWPAPRL +A +  S+    Y + +  +R ++ +C+LVHADLSEFN+L+ K QV+VIDVSQSVE DHP ALEFLR D  NVT FF RRKG+  M+ +ELF+FV   ++  +  ++ +L +A E +  R   D    E  E+ +++++   RTL DV
Sbjct:  257 LLRSHVLVMSFIGDNGWPAPRLKDADISESKARELYLQSIQLIRTLYQECRLVHADLSEFNMLYHKGQVYVIDVSQSVEHDHPHALEFLRKDCNNVTEFF-RRKGVCTMTLKELFDFVTDITICKENIDQ-YLERAMEVSANRTVEDVTEQEKVEEEVFKRAFIPRTLDDV 425          
BLAST of mRNA_M-pyrifera_M_contig114061.2931.1 vs. uniprot
Match: A0A2P8Z397_BLAGE (Non-specific serine/threonine protein kinase n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8Z397_BLAGE)

HSP 1 Score: 150 bits (380), Expect = 3.690e-41
Identity = 78/171 (45.61%), Postives = 114/171 (66.67%), Query Frame = 1
Query:    1 LLRSHVLLLSFLGDDGWPAPRLHEAGLKGSRLSRCYEEVVWAMRRMWVDCKLVHADLSEFNLLWWKDQVWVIDVSQSVEADHPRALEFLRMDAVNVTHFFGRRKGLRVMSARELFEFVRHESLPDQEAEKAFLTKAWEKAKRR---DPAAPESAEDRIWRQSDFVRTLADV 504
            LLR HVLL+ F+G +GWPAP+L +  L  SR  + Y + +  M R++ DCKLVHADLSEFN L+   Q+++IDV+QSVE DHP ALEFLR D  NV+ FF R+KG+  M+ +ELF+F+   S+ +   + A+L K  E+A  R   +  A E  E+ +++++   +TL +V
Sbjct:  134 LLRGHVLLMEFIGKEGWPAPKLKDVELSESRARQLYHDFIIFMWRLYNDCKLVHADLSEFNTLYHSGQLYIIDVAQSVEHDHPHALEFLRTDCTNVSEFF-RKKGVATMTVKELFDFITDRSITESNRD-AYLDKMSERAAARTFEEMTAQEQIEEEVFKKAYIPKTLTEV 302          
BLAST of mRNA_M-pyrifera_M_contig114061.2931.1 vs. uniprot
Match: A0A7S4P0I0_9EUKA (Non-specific serine/threonine protein kinase (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4P0I0_9EUKA)

HSP 1 Score: 147 bits (370), Expect = 3.770e-41
Identity = 80/173 (46.24%), Postives = 111/173 (64.16%), Query Frame = 1
Query:    4 LRSHVLLLSFLGDDGWPAPRLHEAGLKGSRLSRCYEEVVWAMRRMWVDCKLVHADLSEFNLLWWKDQVWVIDVSQSVEADHPRALEFLRMDAVNVTHFFGRRKGLRVMSARELFEFVRHESLPDQEAEKAFLTKAWEKAKRRDPA------APESAEDRIWRQSDFVRTLADV 504
            L+ HVL +SF+G +GWPAPRL +A L  ++ +  Y E +  MR M+  C+LVHAD SE+N+L++K  +WVIDVSQSVE DHP AL FLR D  N+  FF RR G+ VM+ R LF+FV   SL D++ ++ +L K  EK    D        A E  +D +++Q+   RTL +V
Sbjct:   47 LKQHVLGMSFIGREGWPAPRLKDAVLTENKYAEMYRECIIIMRTMYHKCRLVHADFSEYNILYYKGHLWVIDVSQSVEHDHPNALVFLRKDCKNIGDFF-RRNGVMVMTTRMLFDFVTDLSLKDEDVDE-YLEKIQEKLSTEDDEKTTEEKAEEEVKDLVFQQAHIPRTLNEV 217          
BLAST of mRNA_M-pyrifera_M_contig114061.2931.1 vs. uniprot
Match: A0A7S1GJ35_CYCTE (Non-specific serine/threonine protein kinase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJ35_CYCTE)

HSP 1 Score: 151 bits (381), Expect = 5.020e-41
Identity = 70/118 (59.32%), Postives = 90/118 (76.27%), Query Frame = 1
Query:    1 LLRSHVLLLSFLGDDGWPAPRLHEAGLKGSRLSRCYEEVVWAMRRMWVDCKLVHADLSEFNLLWWKDQVWVIDVSQSVEADHPRALEFLRMDAVNVTHFFGRRKGLRVMSARELFEFV 354
            LL+SHVL++ FLG+ GWP+PRL +AGL   R+   Y + V  MRRM+  C+LVH DLSE+N+LW  ++V+VIDVSQSVE+DHP AL+FLR DA NV  FF +  GL VM+ R+LFEFV
Sbjct:   65 LLKSHVLIMEFLGNHGWPSPRLKDAGLSERRMREAYVQAVVIMRRMFQRCRLVHGDLSEYNMLWHNNEVYVIDVSQSVESDHPSALDFLRKDAANVNDFFRKSGGLNVMTTRQLFEFV 182          
BLAST of mRNA_M-pyrifera_M_contig114061.2931.1 vs. uniprot
Match: A0A6L5D237_9INSE (Non-specific serine/threonine protein kinase n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5D237_9INSE)

HSP 1 Score: 148 bits (373), Expect = 1.000e-40
Identity = 81/168 (48.21%), Postives = 109/168 (64.88%), Query Frame = 1
Query:    1 LLRSHVLLLSFLGDDGWPAPRLHEAGLKGSRLSRCYEEVVWAMRRMWVDCKLVHADLSEFNLLWWKDQVWVIDVSQSVEADHPRALEFLRMDAVNVTHFFGRRKGLRVMSARELFEFVRHESLPDQEAEKAFLTKAWEKAKRRDPAAPESAEDRIWRQSDFVRTLADV 504
            LLRSHVLL+ FLG DGWPAP+L +  + GS+    Y E V  + R++ +C+LVHADLSEFN+L+    V+VIDVSQSVE DHP ALEFLR D  N+T +F RR+G+  MS R LFEFV   S+  +  ++     A  K     P   E +E+ +++ S   RTL++V
Sbjct:  139 LLRSHVLLMEFLGTDGWPAPKLKDVEVAGSKACELYRESVEMIWRLYHECRLVHADLSEFNMLYHDGHVYVIDVSQSVEHDHPHALEFLRKDCTNITDYF-RRRGVATMSVRTLFEFVVDPSVTKENVQECLDALA--KQAEESPVQDEVSEE-VFKNSFIPRTLSEV 302          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114061.2931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8D5Q9_CAFRO2.010e-5657.23Non-specific serine/threonine protein kinase n=4 T... [more]
A0A7S1C556_9STRA1.040e-4651.18Serine/threonine-protein kinase RIO1 (Fragment) n=... [more]
B8BTF6_THAPS2.290e-4361.02Non-specific serine/threonine protein kinase (Frag... [more]
A0A0L0G3N3_9EUKA6.650e-4250.30Serine/threonine-protein kinase RIO1 n=1 Tax=Sphae... [more]
A0A4S2N1V2_9PEZI2.290e-4147.93Serine/threonine-protein kinase RIO1 n=1 Tax=Ascod... [more]
A0A1S3HP94_LINUN2.790e-4148.54Serine/threonine-protein kinase RIO1 n=1 Tax=Lingu... [more]
A0A2P8Z397_BLAGE3.690e-4145.61Non-specific serine/threonine protein kinase n=1 T... [more]
A0A7S4P0I0_9EUKA3.770e-4146.24Non-specific serine/threonine protein kinase (Frag... [more]
A0A7S1GJ35_CYCTE5.020e-4159.32Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6L5D237_9INSE1.000e-4048.21Non-specific serine/threonine protein kinase n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114061contigM-pyrifera_M_contig114061:65..568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score159.8
Seed ortholog evalue1.1e-36
Seed eggNOG ortholog72019.SARC_04047T0
Preferred nameRIOK1
KEGG koko:K07178
KEGG Pathwayko03008,map03008
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000228,GO:0000462,GO:0000785,GO:0000790,GO:0001932,GO:0001933,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0007088,GO:0007096,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007399,GO:0007548,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008406,GO:0009791,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0014013,GO:0014015,GO:0016070,GO:0016072,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022613,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030490,GO:0030684,GO:0030688,GO:0030874,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0036093,GO:0036211,GO:0040026,GO:0040028,GO:0042127,GO:0042254,GO:0042274,GO:0042325,GO:0042326,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043409,GO:0043412,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0045137,GO:0045595,GO:0045597,GO:0045935,GO:0045936,GO:0046483,GO:0046578,GO:0046579,GO:0046777,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051056,GO:0051057,GO:0051094,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051704,GO:0051726,GO:0051783,GO:0051960,GO:0051962,GO:0060251,GO:0060252,GO:0060255,GO:0060284,GO:0061062,GO:0061063,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0140096,GO:1901360,GO:1901564,GO:1901987,GO:1901990,GO:1902494,GO:1902531,GO:1902532,GO:1902533,GO:1990234,GO:1990904,GO:2000026,GO:2000232,GO:2000234
EggNOG free text desc.positive regulation of rRNA processing
EggNOG OGs38F6V@33154,COG1718@1,KOG2270@2759
EC2.7.11.1
COG Functional cat.DT
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Exons1
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.9449403-CDS-M-pyrifera_M_contig114061:64..5681622815655.9449403-CDS-M-pyrifera_M_contig114061:64..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114061 65..568 -
1692277507.302042-CDS-M-pyrifera_M_contig114061:64..5681692277507.302042-CDS-M-pyrifera_M_contig114061:64..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114061 65..568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114061.2931.1prot_M-pyrifera_M_contig114061.2931.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114061 65..568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114061.2931.1

>prot_M-pyrifera_M_contig114061.2931.1 ID=prot_M-pyrifera_M_contig114061.2931.1|Name=mRNA_M-pyrifera_M_contig114061.2931.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=168bp
LLRSHVLLLSFLGDDGWPAPRLHEAGLKGSRLSRCYEEVVWAMRRMWVDC
KLVHADLSEFNLLWWKDQVWVIDVSQSVEADHPRALEFLRMDAVNVTHFF
GRRKGLRVMSARELFEFVRHESLPDQEAEKAFLTKAWEKAKRRDPAAPES
AEDRIWRQSDFVRTLADV
back to top

mRNA from alignment at M-pyrifera_M_contig114061:65..568-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114061.2931.1 ID=mRNA_M-pyrifera_M_contig114061.2931.1|Name=mRNA_M-pyrifera_M_contig114061.2931.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig114061:65..568- (Macrocystis pyrifera P11B4 male)
TTGCTTCGGAGCCACGTGCTGTTGCTGTCTTTTCTCGGGGATGACGGCTG GCCTGCGCCGCGGCTACACGAGGCTGGGCTGAAGGGGAGTCGGCTGAGTC GCTGCTACGAGGAAGTGGTGTGGGCGATGCGGCGCATGTGGGTGGACTGC AAGCTGGTGCATGCGGACCTGAGCGAGTTCAACCTGCTGTGGTGGAAGGA CCAGGTGTGGGTGATCGACGTGTCCCAGTCAGTGGAGGCAGACCATCCTC GCGCGCTCGAGTTCCTGCGAATGGACGCCGTCAACGTCACCCACTTCTTT GGACGCAGGAAAGGGCTGCGCGTCATGAGCGCCAGGGAGCTCTTCGAGTT TGTCAGACACGAATCCCTCCCAGACCAGGAGGCAGAAAAGGCATTCCTCA CAAAAGCATGGGAAAAGGCAAAGCGAAGGGACCCGGCCGCCCCAGAGTCC GCTGAAGACCGCATCTGGAGACAGTCAGACTTTGTCAGAACACTTGCAGA TGTG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig114061:65..568-

>mRNA_M-pyrifera_M_contig114061.2931.1 ID=mRNA_M-pyrifera_M_contig114061.2931.1|Name=mRNA_M-pyrifera_M_contig114061.2931.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1008bp|location=Sequence derived from alignment at M-pyrifera_M_contig114061:65..568- (Macrocystis pyrifera P11B4 male)
TTGCTTCGGAGCCACGTGCTGTTGCTGTCTTTTCTCGGGGATGACGGCTG
GCCTGCGCCGCGGCTACACGAGGCTGGGCTGAAGGGGAGTCGGCTGAGTC
GCTGCTACGAGGAAGTGGTGTGGGCGATGCGGCGCATGTGGGTGGACTGC
AAGCTGGTGCATGCGGACCTGAGCGAGTTCAACCTGCTGTGGTGGAAGGA
CCAGGTGTGGGTGATCGACGTGTCCCAGTCAGTGGAGGCAGACCATCCTC
GCGCGCTCGAGTTCCTGCGAATGGACGCCGTCAACGTCACCCACTTCTTT
GGACGCAGGAAAGGGCTGCGCGTCATGAGCGCCAGGGAGCTCTTCGAGTT
TGTCAGACACGAATCCCTCCCAGACCAGGAGGCAGAAAAGGCATTCCTCA
CAAAAGCATGGGAAAAGGCAAAGCGAAGGGACCCGGCCGCCCCAGAGTCC
GCTGAAGACCGCATCTGGAGACAGTCAGACTTTGTCAGAACACTTGCAGA
TGTGTTGCTTCGGAGCCACGTGCTGTTGCTGTCTTTTCTCGGGGATGACG
GCTGGCCTGCGCCGCGGCTACACGAGGCTGGGCTGAAGGGGAGTCGGCTG
AGTCGCTGCTACGAGGAAGTGGTGTGGGCGATGCGGCGCATGTGGGTGGA
CTGCAAGCTGGTGCATGCGGACCTGAGCGAGTTCAACCTGCTGTGGTGGA
AGGACCAGGTGTGGGTGATCGACGTGTCCCAGTCAGTGGAGGCAGACCAT
CCTCGCGCGCTCGAGTTCCTGCGAATGGACGCCGTCAACGTCACCCACTT
CTTTGGACGCAGGAAAGGGCTGCGCGTCATGAGCGCCAGGGAGCTCTTCG
AGTTTGTCAGACACGAATCCCTCCCAGACCAGGAGGCAGAAAAGGCATTC
CTCACAAAAGCATGGGAAAAGGCAAAGCGAAGGGACCCGGCCGCCCCAGA
GTCCGCTGAAGACCGCATCTGGAGACAGTCAGACTTTGTCAGAACACTTG
CAGATGTG
back to top