mRNA_M-pyrifera_M_contig114050.2927.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114050.2927.1
Unique NamemRNA_M-pyrifera_M_contig114050.2927.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A7X6ATF0_9ACTN (DUF4244 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ATF0_9ACTN)

HSP 1 Score: 86.7 bits (213), Expect = 7.420e-20
Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 2
Query:    8 RGDRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRI 157
            RGDRGQATAEYALVVLGAAAVAMLLIAWAT+TGK+STLLNK+VDSVA RI
Sbjct:   16 RGDRGQATAEYALVVLGAAAVAMLLIAWATTTGKVSTLLNKMVDSVADRI 65          
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A6B1B2A6_9ACTN (DUF4244 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B2A6_9ACTN)

HSP 1 Score: 78.6 bits (192), Expect = 1.400e-16
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 2
Query:   14 DRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRIT 160
            DRGQATAEYALVVLGAA VAM+LIAWATSTGK+S LLNKVV+S+A R++
Sbjct:   27 DRGQATAEYALVVLGAATVAMMLIAWATSTGKVSALLNKVVNSIADRVS 75          
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A6B1EAK3_9ACTN (DUF4244 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EAK3_9ACTN)

HSP 1 Score: 72.8 bits (177), Expect = 2.970e-14
Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 2
Query:    2 RGRGDRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRI 157
            R  GDRGQ TAEYALV++GAAAVA+LL+AWAT +GK++TLL+KVVD+VA  +
Sbjct:   29 RRAGDRGQTTAEYALVIVGAAAVALLLLAWATGSGKIATLLDKVVDTVANMV 80          
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A6B1B3Y6_9ACTN (Pilus assembly protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B3Y6_9ACTN)

HSP 1 Score: 72.0 bits (175), Expect = 4.560e-13
Identity = 57/132 (43.18%), Postives = 72/132 (54.55%), Query Frame = 1
Query:   43 VGGARSSRGCHVAHRVGDEHGEDVDPAQQGGRQRGRTDHVN--RLGRPAPVLCGGAGRSSAGQATVEVAFVLPVIVLLALAVGQVAVVAKARVEVTHAAREGARVAAVGESEAAVRAAVLASGSLSASRVQV 432
             GG R          +G  H + + PAQQGG+   R+  V   RLG             S GQATVE A +LPV V+  L + Q     +ARV +THAAREGARVAAVG S+  V+ AV+ SGSL  ++V V
Sbjct:    3 AGGTRRGHSSDDVDCLGHIHRQGIGPAQQGGQLNSRSGFVTGRRLG-------------SRGQATVEFALLLPVAVVALLVIAQXXXXXRARVMLTHAAREGARVAAVGGSDTEVKTAVIDSGSLDPTQVTV 121          
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A7V9NTF4_9ACTN (DUF4244 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9NTF4_9ACTN)

HSP 1 Score: 67.0 bits (162), Expect = 4.450e-12
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:    8 RGDRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRI 157
            R DRGQATAEYALV+LGAAAVA+L++ WA  TG++  LL+ V DSV G+I
Sbjct:   24 RNDRGQATAEYALVLLGAAAVAVLVVGWAAKTGRVGALLDSVFDSVTGKI 73          
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A2D6KJI5_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6KJI5_9ACTN)

HSP 1 Score: 69.3 bits (168), Expect = 8.380e-12
Identity = 54/120 (45.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   73 HVAHRVGDEHGEDVDPAQQGGRQRGRTDHVNRLGRPAPVLCGGAGRSSAGQATVEVAFVLPVIVLLALAVGQVAVVAKARVEVTHAAREGARVAAVGESEAAVRAAVLASGSLSASRVQV 432
            H  H++G+ H +D  P +QG     R   V R  RP         RS  GQATVE+A VLPV+V+LAL + QV +V ++ V V H+AREG RVAA G S   V  AV+ S  LS    QV
Sbjct:   39 HPRHQLGNRHRQDHQPVRQGSELPDRQGGVRR--RP--------HRSDGGQATVELALVLPVVVVLALGLIQVGLVVRSAVLVQHSAREGVRVAATGGSTREVEDAVIGSSGLSPRDSQV 148          
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A7K2DHV7_9ACTN (DUF4244 domain-containing protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2DHV7_9ACTN)

HSP 1 Score: 66.2 bits (160), Expect = 9.110e-12
Identity = 32/49 (65.31%), Postives = 44/49 (89.80%), Query Frame = 2
Query:   14 DRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRIT 160
            DRGQ TAEYALV++GAAAVA+LL+ WATS+GK++ LL+K+VD+VA  ++
Sbjct:   27 DRGQTTAEYALVLVGAAAVALLLLTWATSSGKIAWLLDKMVDTVANMVS 75          
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A6I3EYB8_9ACTN (DUF4244 domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6I3EYB8_9ACTN)

HSP 1 Score: 65.5 bits (158), Expect = 1.960e-11
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 2
Query:    2 RGRGDRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRI 157
            RGR DRGQ TAEYALV+LGAA +A+LL+ WAT +G +  L + V+D V GR+
Sbjct:   26 RGRDDRGQTTAEYALVLLGAAGIAVLLVGWATKSGAIGALFDAVLDGVVGRV 77          
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: UPI001F26B6A3 (DUF4244 domain-containing protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001F26B6A3)

HSP 1 Score: 64.7 bits (156), Expect = 2.330e-11
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 2
Query:    8 RGDRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRIT 160
            R D GQ TAEYALV+LGAAAVA+LL+ WAT T ++  LL+ V+D + GR+T
Sbjct:    7 RSDEGQTTAEYALVLLGAAAVALLLVGWATKTNRVGKLLDFVLDQIVGRVT 57          
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A354B9H7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A354B9H7_9ACTN)

HSP 1 Score: 63.9 bits (154), Expect = 5.230e-11
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 2
Query:    2 RGRGDRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRI 157
            RG  DRGQATAEYALV+LGAAA+A+L+I WA +T  +  L + V+DSVA R+
Sbjct:   10 RGHRDRGQATAEYALVILGAAALALLVIGWAANTSAVGDLFDAVIDSVARRV 61          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X6ATF0_9ACTN7.420e-2092.00DUF4244 domain-containing protein n=1 Tax=Actinomy... [more]
A0A6B1B2A6_9ACTN1.400e-1681.63DUF4244 domain-containing protein n=1 Tax=Acidimic... [more]
A0A6B1EAK3_9ACTN2.970e-1469.23DUF4244 domain-containing protein n=2 Tax=Acidimic... [more]
A0A6B1B3Y6_9ACTN4.560e-1343.18Pilus assembly protein n=1 Tax=Acidimicrobiaceae b... [more]
A0A7V9NTF4_9ACTN4.450e-1266.00DUF4244 domain-containing protein n=1 Tax=Actinomy... [more]
A0A2D6KJI5_9ACTN8.380e-1245.00Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7K2DHV7_9ACTN9.110e-1265.31DUF4244 domain-containing protein n=5 Tax=Acidimic... [more]
A0A6I3EYB8_9ACTN1.960e-1159.62DUF4244 domain-containing protein n=2 Tax=root Tax... [more]
UPI001F26B6A32.330e-1160.78DUF4244 domain-containing protein n=1 Tax=Rhabdoth... [more]
A0A354B9H7_9ACTN5.230e-1161.54Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114050contigM-pyrifera_M_contig114050:16..447 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size434
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.7647767-CDS-M-pyrifera_M_contig114050:15..4471622815655.7647767-CDS-M-pyrifera_M_contig114050:15..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114050 16..447 -
1692277507.2535586-CDS-M-pyrifera_M_contig114050:15..4471692277507.2535586-CDS-M-pyrifera_M_contig114050:15..447Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114050 16..447 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114050.2927.1prot_M-pyrifera_M_contig114050.2927.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114050 16..447 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114050.2927.1

>prot_M-pyrifera_M_contig114050.2927.1 ID=prot_M-pyrifera_M_contig114050.2927.1|Name=mRNA_M-pyrifera_M_contig114050.2927.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
PGARRPRAGDRRVCVGGARSSRGCHVAHRVGDEHGEDVDPAQQGGRQRGR
TDHVNRLGRPAPVLCGGAGRSSAGQATVEVAFVLPVIVLLALAVGQVAVV
AKARVEVTHAAREGARVAAVGESEAAVRAAVLASGSLSASRVQV
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mRNA from alignment at M-pyrifera_M_contig114050:16..447-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114050.2927.1 ID=mRNA_M-pyrifera_M_contig114050.2927.1|Name=mRNA_M-pyrifera_M_contig114050.2927.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig114050:16..447- (Macrocystis pyrifera P11B4 male)
CCGGGGGCGCGGCGACCGAGGGCAGGCGACCGCCGAGTATGCGTTGGTGG TGCTCGGAGCAGCCGCGGTTGCCATGTTGCTCATCGCGTGGGCGACGAGC ACGGGGAAGATGTCGACCCTGCTCAACAAGGTGGTCGACAGCGTGGCCGG ACGGATCACGTGAATCGCCTTGGTCGGCCCGCTCCCGTGCTGTGTGGGGG AGCGGGCCGGTCATCGGCCGGTCAGGCAACGGTTGAGGTCGCCTTCGTTC TGCCGGTGATCGTGTTGTTGGCCTTGGCGGTCGGTCAGGTCGCGGTAGTG GCCAAGGCGCGGGTCGAGGTCACCCACGCGGCGCGCGAGGGAGCCCGAGT CGCCGCAGTAGGGGAGAGCGAGGCGGCGGTGCGTGCCGCCGTGTTGGCCA GTGGCTCGCTGTCAGCGTCGCGGGTGCAGGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114050:16..447-

>mRNA_M-pyrifera_M_contig114050.2927.1 ID=mRNA_M-pyrifera_M_contig114050.2927.1|Name=mRNA_M-pyrifera_M_contig114050.2927.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig114050:16..447- (Macrocystis pyrifera P11B4 male)
CCGGGGGCGCGGCGACCGAGGGCAGGCGACCGCCGAGTATGCGTTGGTGG
TGCTCGGAGCAGCCGCGGTTGCCATGTTGCTCATCGCGTGGGCGACGAGC
ACGGGGAAGATGTCGACCCTGCTCAACAAGGTGGTCGACAGCGTGGCCGG
ACGGATCACGTGAATCGCCTTGGTCGGCCCGCTCCCGTGCTGTGTGGGGG
AGCGGGCCGGTCATCGGCCGGTCAGGCAACGGTTGAGGTCGCCTTCGTTC
TGCCGGTGATCGTGTTGTTGGCCTTGGCGGTCGGTCAGGTCGCGGTAGTG
GCCAAGGCGCGGGTCGAGGTCACCCACGCGGCGCGCGAGGGAGCCCGAGT
CGCCGCAGTAGGGGAGAGCGAGGCGGCGGTGCGTGCCGCCGTGTTGGCCA
GTGGCTCGCTGTCAGCGTCGCGGGTGCAGGTCCCGGGGGCGCGGCGACCG
AGGGCAGGCGACCGCCGAGTATGCGTTGGTGGTGCTCGGAGCAGCCGCGG
TTGCCATGTTGCTCATCGCGTGGGCGACGAGCACGGGGAAGATGTCGACC
CTGCTCAACAAGGTGGTCGACAGCGTGGCCGGACGGATCACGTGAATCGC
CTTGGTCGGCCCGCTCCCGTGCTGTGTGGGGGAGCGGGCCGGTCATCGGC
CGGTCAGGCAACGGTTGAGGTCGCCTTCGTTCTGCCGGTGATCGTGTTGT
TGGCCTTGGCGGTCGGTCAGGTCGCGGTAGTGGCCAAGGCGCGGGTCGAG
GTCACCCACGCGGCGCGCGAGGGAGCCCGAGTCGCCGCAGTAGGGGAGAG
CGAGGCGGCGGTGCGTGCCGCCGTGTTGGCCAGTGGCTCGCTGTCAGCGT
CGCGGGTGCAGGTC
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