mRNA_M-pyrifera_M_contig114050.2927.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A7X6ATF0_9ACTN (DUF4244 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ATF0_9ACTN) HSP 1 Score: 86.7 bits (213), Expect = 7.420e-20 Identity = 46/50 (92.00%), Postives = 49/50 (98.00%), Query Frame = 2
Query: 8 RGDRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRI 157
RGDRGQATAEYALVVLGAAAVAMLLIAWAT+TGK+STLLNK+VDSVA RI
Sbjct: 16 RGDRGQATAEYALVVLGAAAVAMLLIAWATTTGKVSTLLNKMVDSVADRI 65
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A6B1B2A6_9ACTN (DUF4244 domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B2A6_9ACTN) HSP 1 Score: 78.6 bits (192), Expect = 1.400e-16 Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 2
Query: 14 DRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRIT 160
DRGQATAEYALVVLGAA VAM+LIAWATSTGK+S LLNKVV+S+A R++
Sbjct: 27 DRGQATAEYALVVLGAATVAMMLIAWATSTGKVSALLNKVVNSIADRVS 75
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A6B1EAK3_9ACTN (DUF4244 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EAK3_9ACTN) HSP 1 Score: 72.8 bits (177), Expect = 2.970e-14 Identity = 36/52 (69.23%), Postives = 46/52 (88.46%), Query Frame = 2
Query: 2 RGRGDRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRI 157
R GDRGQ TAEYALV++GAAAVA+LL+AWAT +GK++TLL+KVVD+VA +
Sbjct: 29 RRAGDRGQTTAEYALVIVGAAAVALLLLAWATGSGKIATLLDKVVDTVANMV 80
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A6B1B3Y6_9ACTN (Pilus assembly protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B3Y6_9ACTN) HSP 1 Score: 72.0 bits (175), Expect = 4.560e-13 Identity = 57/132 (43.18%), Postives = 72/132 (54.55%), Query Frame = 1
Query: 43 VGGARSSRGCHVAHRVGDEHGEDVDPAQQGGRQRGRTDHVN--RLGRPAPVLCGGAGRSSAGQATVEVAFVLPVIVLLALAVGQVAVVAKARVEVTHAAREGARVAAVGESEAAVRAAVLASGSLSASRVQV 432
GG R +G H + + PAQQGG+ R+ V RLG S GQATVE A +LPV V+ L + Q +ARV +THAAREGARVAAVG S+ V+ AV+ SGSL ++V V
Sbjct: 3 AGGTRRGHSSDDVDCLGHIHRQGIGPAQQGGQLNSRSGFVTGRRLG-------------SRGQATVEFALLLPVAVVALLVIAQXXXXXRARVMLTHAAREGARVAAVGGSDTEVKTAVIDSGSLDPTQVTV 121
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A7V9NTF4_9ACTN (DUF4244 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9NTF4_9ACTN) HSP 1 Score: 67.0 bits (162), Expect = 4.450e-12 Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query: 8 RGDRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRI 157
R DRGQATAEYALV+LGAAAVA+L++ WA TG++ LL+ V DSV G+I
Sbjct: 24 RNDRGQATAEYALVLLGAAAVAVLVVGWAAKTGRVGALLDSVFDSVTGKI 73
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A2D6KJI5_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6KJI5_9ACTN) HSP 1 Score: 69.3 bits (168), Expect = 8.380e-12 Identity = 54/120 (45.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query: 73 HVAHRVGDEHGEDVDPAQQGGRQRGRTDHVNRLGRPAPVLCGGAGRSSAGQATVEVAFVLPVIVLLALAVGQVAVVAKARVEVTHAAREGARVAAVGESEAAVRAAVLASGSLSASRVQV 432
H H++G+ H +D P +QG R V R RP RS GQATVE+A VLPV+V+LAL + QV +V ++ V V H+AREG RVAA G S V AV+ S LS QV
Sbjct: 39 HPRHQLGNRHRQDHQPVRQGSELPDRQGGVRR--RP--------HRSDGGQATVELALVLPVVVVLALGLIQVGLVVRSAVLVQHSAREGVRVAATGGSTREVEDAVIGSSGLSPRDSQV 148
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A7K2DHV7_9ACTN (DUF4244 domain-containing protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2DHV7_9ACTN) HSP 1 Score: 66.2 bits (160), Expect = 9.110e-12 Identity = 32/49 (65.31%), Postives = 44/49 (89.80%), Query Frame = 2
Query: 14 DRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRIT 160
DRGQ TAEYALV++GAAAVA+LL+ WATS+GK++ LL+K+VD+VA ++
Sbjct: 27 DRGQTTAEYALVLVGAAAVALLLLTWATSSGKIAWLLDKMVDTVANMVS 75
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A6I3EYB8_9ACTN (DUF4244 domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6I3EYB8_9ACTN) HSP 1 Score: 65.5 bits (158), Expect = 1.960e-11 Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 2
Query: 2 RGRGDRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRI 157
RGR DRGQ TAEYALV+LGAA +A+LL+ WAT +G + L + V+D V GR+
Sbjct: 26 RGRDDRGQTTAEYALVLLGAAGIAVLLVGWATKSGAIGALFDAVLDGVVGRV 77
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: UPI001F26B6A3 (DUF4244 domain-containing protein n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001F26B6A3) HSP 1 Score: 64.7 bits (156), Expect = 2.330e-11 Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 2
Query: 8 RGDRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRIT 160
R D GQ TAEYALV+LGAAAVA+LL+ WAT T ++ LL+ V+D + GR+T
Sbjct: 7 RSDEGQTTAEYALVLLGAAAVALLLVGWATKTNRVGKLLDFVLDQIVGRVT 57
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Match: A0A354B9H7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A354B9H7_9ACTN) HSP 1 Score: 63.9 bits (154), Expect = 5.230e-11 Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 2
Query: 2 RGRGDRGQATAEYALVVLGAAAVAMLLIAWATSTGKMSTLLNKVVDSVAGRI 157
RG DRGQATAEYALV+LGAAA+A+L+I WA +T + L + V+DSVA R+
Sbjct: 10 RGHRDRGQATAEYALVILGAAALALLVIGWAANTSAVGDLFDAVIDSVARRV 61 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114050.2927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig114050.2927.1 >prot_M-pyrifera_M_contig114050.2927.1 ID=prot_M-pyrifera_M_contig114050.2927.1|Name=mRNA_M-pyrifera_M_contig114050.2927.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp PGARRPRAGDRRVCVGGARSSRGCHVAHRVGDEHGEDVDPAQQGGRQRGRback to top mRNA from alignment at M-pyrifera_M_contig114050:16..447- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig114050.2927.1 ID=mRNA_M-pyrifera_M_contig114050.2927.1|Name=mRNA_M-pyrifera_M_contig114050.2927.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig114050:16..447- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig114050:16..447- >mRNA_M-pyrifera_M_contig114050.2927.1 ID=mRNA_M-pyrifera_M_contig114050.2927.1|Name=mRNA_M-pyrifera_M_contig114050.2927.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig114050:16..447- (Macrocystis pyrifera P11B4 male)back to top |