mRNA_M-pyrifera_M_contig114024.2916.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114024.2916.1
Unique NamemRNA_M-pyrifera_M_contig114024.2916.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114024.2916.1 vs. uniprot
Match: A0A220W7W7_9SPHN (Uncharacterized protein n=2 Tax=Sphingorhabdus sp. SMR4y TaxID=2584094 RepID=A0A220W7W7_9SPHN)

HSP 1 Score: 65.9 bits (159), Expect = 3.330e-13
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 
Query:    1 AMKKGPEVSSQPPLIFSAQAERQGLEAHAAXXXXXXXXXXXAAAASFV 144
            AMKKGPEVSSQPPLIFSAQAERQGLEAHAAXXXXXXXXXXXAAAASFV
Sbjct:   12 AMKKGPEVSSQPPLIFSAQAERQGLEAHAAXXXXXXXXXXXAAAASFV 59
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114024.2916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A220W7W7_9SPHN3.330e-13100.00Uncharacterized protein n=2 Tax=Sphingorhabdus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114024contigM-pyrifera_M_contig114024:2..151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size147
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.0993743-UTR-M-pyrifera_M_contig114024:1..41622815655.0993743-UTR-M-pyrifera_M_contig114024:1..4Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114024 2..4 +
1692277507.0809026-UTR-M-pyrifera_M_contig114024:1..41692277507.0809026-UTR-M-pyrifera_M_contig114024:1..4Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114024 2..4 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.1148355-CDS-M-pyrifera_M_contig114024:4..1511622815655.1148355-CDS-M-pyrifera_M_contig114024:4..151Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114024 5..151 +
1692277507.0968351-CDS-M-pyrifera_M_contig114024:4..1511692277507.0968351-CDS-M-pyrifera_M_contig114024:4..151Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114024 5..151 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114024.2916.1prot_M-pyrifera_M_contig114024.2916.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114024 5..151 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114024.2916.1

>prot_M-pyrifera_M_contig114024.2916.1 ID=prot_M-pyrifera_M_contig114024.2916.1|Name=mRNA_M-pyrifera_M_contig114024.2916.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
MKKGPEVSSQPPLIFSAQAERQGLEAHAAHAAAHAAHVGHAAAASFVV*
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mRNA from alignment at M-pyrifera_M_contig114024:2..151+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114024.2916.1 ID=mRNA_M-pyrifera_M_contig114024.2916.1|Name=mRNA_M-pyrifera_M_contig114024.2916.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig114024:2..151+ (Macrocystis pyrifera P11B4 male)
GCAATGAAAAAGGGGCCGGAAGTTTCCTCCCAGCCCCCCTTGATATTTTC
AGCGCAAGCCGAACGGCAGGGTTTAGAAGCCCATGCCGCCCATGCCGCCG
CCCATGCCGCCCATGTCGGGCATGCCGCCGCCGCCAGCTTTGTCGTCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114024:2..151+

>mRNA_M-pyrifera_M_contig114024.2916.1 ID=mRNA_M-pyrifera_M_contig114024.2916.1|Name=mRNA_M-pyrifera_M_contig114024.2916.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig114024:2..151+ (Macrocystis pyrifera P11B4 male)
ATGAAAAAGGGGCCGGAAGTTTCCTCCCAGCCCCCCTTGATATTTTCAGC
GCAAGCCGAACGGCAGGGTTTAGAAGCCCATGCCGCCCATGCCGCCGCCC
ATGCCGCCCATGTCGGGCATGCCGCCGCCGCCAGCTTTGTCGTCTGAATG
AAAAAGGGGCCGGAAGTTTCCTCCCAGCCCCCCTTGATATTTTCAGCGCA
AGCCGAACGGCAGGGTTTAGAAGCCCATGCCGCCCATGCCGCCGCCCATG
CCGCCCATGTCGGGCATGCCGCCGCCGCCAGCTTTGTCGTCTGA
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