mRNA_M-pyrifera_M_contig114008.2910.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114008.2910.1
Unique NamemRNA_M-pyrifera_M_contig114008.2910.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig114008.2910.1 vs. uniprot
Match: A0A2C9JDB7_BIOGL (DNA repair protein RAD51 homolog n=7 Tax=Gastropoda TaxID=6448 RepID=A0A2C9JDB7_BIOGL)

HSP 1 Score: 208 bits (530), Expect = 2.270e-64
Identity = 96/140 (68.57%), Postives = 122/140 (87.14%), Query Frame = 1 
Query:    7 QEVGGPMPVAQLELNGISAGDVKKLSEGGFNTVEAVAYATKKMLVSVRGLSEAKVEKILAAASKLIPMGFQTATDVHRQRQDVIYLSTGSTELDKILHGGMETGSITELYGEFRTGKTQLCHTLCVTCQLPLDQGGAEGK 426
            +E  GPMP+A+LE NGISAGD+KKL E GF+TVE+VA+A KKML+S++G+SE K +KI+A A+KL+PMGF TAT+ H++R ++I L+TGS ELDK+L GG+ETGSITE++GEFRTGKTQLCHTL VTCQLP+D GG EGK
Sbjct:   21 EETFGPMPLAKLEGNGISAGDIKKLEEAGFHTVESVAFAPKKMLLSIKGISEVKADKIVAEAAKLVPMGFTTATEFHQKRSEIIQLTTGSKELDKLLQGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDMGGGEGK 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig114008.2910.1 vs. uniprot
Match: Q1WBR2_PHYPO (Rad51 (Fragment) n=1 Tax=Physarum polycephalum TaxID=5791 RepID=Q1WBR2_PHYPO)

HSP 1 Score: 201 bits (511), Expect = 2.170e-63
Identity = 92/142 (64.79%), Postives = 122/142 (85.92%), Query Frame = 1 
Query:    1 DVQEVGGPMPVAQLELNGISAGDVKKLSEGGFNTVEAVAYATKKMLVSVRGLSEAKVEKILAAASKLIPMGFQTATDVHRQRQDVIYLSTGSTELDKILHGGMETGSITELYGEFRTGKTQLCHTLCVTCQLPLDQGGAEGK 426
            + +E  GP+P+A+LE +GISA D+KKL E GF+TVE+VAYATKK L +V+G+SEAK +K++ +A+KL+PMGF TAT++H  R+++I ++TGSTEL+K+L GG+ETGSITE++GEFRTGKTQLCHTLCVTCQLPL   G EGK
Sbjct:    7 EAEEESGPIPIAKLEGSGISAADIKKLMESGFHTVESVAYATKKSLSAVKGISEAKADKLVESAAKLVPMGFITATEMHENRKEIIQITTGSTELNKLLDGGIETGSITEIFGEFRTGKTQLCHTLCVTCQLPLADNGGEGK 148
[Close]
BLAST of mRNA_M-pyrifera_M_contig114008.2910.1 vs. uniprot
Match: A0A3P9MWD1_POERE (RAD51 recombinase n=3 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3P9MWD1_POERE)

HSP 1 Score: 201 bits (511), Expect = 4.230e-63
Identity = 92/140 (65.71%), Postives = 120/140 (85.71%), Query Frame = 1 
Query:    7 QEVGGPMPVAQLELNGISAGDVKKLSEGGFNTVEAVAYATKKMLVSVRGLSEAKVEKILAAASKLIPMGFQTATDVHRQRQDVIYLSTGSTELDKILHGGMETGSITELYGEFRTGKTQLCHTLCVTCQLPLDQGGAEGK 426
            +E  GP P+++LE  GISA D+KKL + GF+T+EAVAYA KK L++++G+SEAK +K+LA A+KL+PMGF TAT+ H++R ++I +STGS ELDK+L GG+ETGSITE++GEFRTGKTQLCHTL VTCQLP+DQGG EGK
Sbjct:   16 EENXGPQPLSRLEHCGISASDIKKLEDAGFHTIEAVAYAPKKELLNIKGISEAKADKVLAEAAKLVPMGFTTATEFHQRRAEIIQISTGSKELDKLLQGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGK 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig114008.2910.1 vs. uniprot
Match: A0A7S4ML14_9EUKA (DNA repair protein RAD51 homolog n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4ML14_9EUKA)

HSP 1 Score: 204 bits (520), Expect = 6.020e-63
Identity = 97/140 (69.29%), Postives = 121/140 (86.43%), Query Frame = 1 
Query:    7 QEVGGPMPVAQLELNGISAGDVKKLSEGGFNTVEAVAYATKKMLVSVRGLSEAKVEKILAAASKLIPMGFQTATDVHRQRQDVIYLSTGSTELDKILHGGMETGSITELYGEFRTGKTQLCHTLCVTCQLPLDQGGAEGK 426
            +E  GP+PV +LE +GI+A D KKL E GF+TVE+VAY+T K L SV+G++EAK EK+L AASKL+PMGFQTAT+ H+ R ++I+L+TGSTELDKIL GG+ETGSITE++GEFRTGK+QL H LCVTCQLP+DQGGAEGK
Sbjct:   14 EEECGPLPVQRLEAHGITATDTKKLMEAGFHTVESVAYSTLKSLTSVKGITEAKAEKLLTAASKLVPMGFQTATECHQARSEIIHLTTGSTELDKILMGGIETGSITEIFGEFRTGKSQLAHMLCVTCQLPVDQGGAEGK 153
[Close]
BLAST of mRNA_M-pyrifera_M_contig114008.2910.1 vs. uniprot
Match: A0A2K6M7Q9_RHIBE (RECA_2 domain-containing protein n=10 Tax=Boreoeutheria TaxID=1437010 RepID=A0A2K6M7Q9_RHIBE)

HSP 1 Score: 201 bits (510), Expect = 6.390e-63
Identity = 92/140 (65.71%), Postives = 120/140 (85.71%), Query Frame = 1 
Query:    7 QEVGGPMPVAQLELNGISAGDVKKLSEGGFNTVEAVAYATKKMLVSVRGLSEAKVEKILAAASKLIPMGFQTATDVHRQRQDVIYLSTGSTELDKILHGGMETGSITELYGEFRTGKTQLCHTLCVTCQLPLDQGGAEGK 426
            +E  GP P+++LE  GI+A DVKKL E GF+TVEAVAYA KK L++++G+SEAK +KILA A+KL+PMGF TAT+ H++R ++I ++TGS ELDK+L GG+ETGSITE++GEFRTGKTQ+CHTL VTCQLP+D+GG EGK
Sbjct:   17 EESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGK 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig114008.2910.1 vs. uniprot
Match: UPI0007ACCEC4 (DNA repair protein RAD51 homolog A-like n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=UPI0007ACCEC4)

HSP 1 Score: 200 bits (508), Expect = 9.690e-63
Identity = 92/140 (65.71%), Postives = 119/140 (85.00%), Query Frame = 1 
Query:    7 QEVGGPMPVAQLELNGISAGDVKKLSEGGFNTVEAVAYATKKMLVSVRGLSEAKVEKILAAASKLIPMGFQTATDVHRQRQDVIYLSTGSTELDKILHGGMETGSITELYGEFRTGKTQLCHTLCVTCQLPLDQGGAEGK 426
            +E  GP P+++LE  GIS+ D+KKL +GGF+TVEAVAYA KK L+ ++G+SEAK +KIL  A+K++PMGF TAT+ H++R ++I +STGS ELDK+L GG+ETGSITE++GEFRTGKTQLCHTL VTCQLP+DQGG EGK
Sbjct:   18 EEHFGPQPISRLEQCGISSSDIKKLEDGGFHTVEAVAYAPKKELLHIKGVSEAKADKILTEAAKMVPMGFTTATEFHQRRAEIIQISTGSKELDKLLQGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGK 157
[Close]
BLAST of mRNA_M-pyrifera_M_contig114008.2910.1 vs. uniprot
Match: A0A482VJ29_9CUCU (DNA repair protein RAD51 homolog n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VJ29_9CUCU)

HSP 1 Score: 204 bits (518), Expect = 1.280e-62
Identity = 97/142 (68.31%), Postives = 121/142 (85.21%), Query Frame = 1 
Query:    1 DVQEVGGPMPVAQLELNGISAGDVKKLSEGGFNTVEAVAYATKKMLVSVRGLSEAKVEKILAAASKLIPMGFQTATDVHRQRQDVIYLSTGSTELDKILHGGMETGSITELYGEFRTGKTQLCHTLCVTCQLPLDQGGAEGK 426
            DV E G P PV++LE NG++AGD+KKL E GF+TVE+VA+  KK L S++GLSEAKVEKILA A+KL+PMGF TATD H++R ++I L+TGS ELDK+L GG+ETGSITE++GEFRTGKTQ+CHTL VTCQLP++ GG EGK
Sbjct:   15 DVDECG-PQPVSKLEGNGVTAGDIKKLEEAGFHTVESVAFTPKKCLASLKGLSEAKVEKILAEAAKLVPMGFTTATDFHQKRSEIIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQICHTLAVTCQLPIESGGGEGK 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig114008.2910.1 vs. uniprot
Match: A0A8D1AIL7_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1AIL7_PIG)

HSP 1 Score: 199 bits (506), Expect = 2.280e-62
Identity = 91/140 (65.00%), Postives = 119/140 (85.00%), Query Frame = 1 
Query:    7 QEVGGPMPVAQLELNGISAGDVKKLSEGGFNTVEAVAYATKKMLVSVRGLSEAKVEKILAAASKLIPMGFQTATDVHRQRQDVIYLSTGSTELDKILHGGMETGSITELYGEFRTGKTQLCHTLCVTCQLPLDQGGAEGK 426
            +E  GP P+++LE  GI+A DVKKL E GF+TVEAVAYA KK L++++G+SEAK +KIL  A+KL+PMGF TAT+ H++R ++I ++TGS ELDK+L GG+ETGSITE++GEFRTGKTQ+CHTL VTCQLP+D+GG EGK
Sbjct:   17 EESFGPQPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILTEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGK 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig114008.2910.1 vs. uniprot
Match: A0A7L4N058_9AVES (RAD51 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7L4N058_9AVES)

HSP 1 Score: 197 bits (502), Expect = 2.580e-62
Identity = 93/140 (66.43%), Postives = 119/140 (85.00%), Query Frame = 1 
Query:    7 QEVGGPMPVAQLELNGISAGDVKKLSEGGFNTVEAVAYATKKMLVSVRGLSEAKVEKILAAASKLIPMGFQTATDVHRQRQDVIYLSTGSTELDKILHGGMETGSITELYGEFRTGKTQLCHTLCVTCQLPLDQGGAEGK 426
            +E  GP  +++LE  GI+A DVKKL E GF+TVEAVAYA KK L++++G+SEAK +KILA A+KL+PMGF TAT+ H++R ++I ++TGS ELDK+L GG+ETGSITEL+GEFRTGKTQLCHTL VTCQLP+D+GG EGK
Sbjct:   17 EESFGPQLISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELLNIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGK 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig114008.2910.1 vs. uniprot
Match: F7IGA0_CALJA (RAD51 recombinase n=32 Tax=Amniota TaxID=32524 RepID=F7IGA0_CALJA)

HSP 1 Score: 201 bits (511), Expect = 2.740e-62
Identity = 93/140 (66.43%), Postives = 120/140 (85.71%), Query Frame = 1 
Query:    7 QEVGGPMPVAQLELNGISAGDVKKLSEGGFNTVEAVAYATKKMLVSVRGLSEAKVEKILAAASKLIPMGFQTATDVHRQRQDVIYLSTGSTELDKILHGGMETGSITELYGEFRTGKTQLCHTLCVTCQLPLDQGGAEGK 426
            +E  GP PV++LE  GI+A DVKKL E GF+TVEAVAYA KK L++++G+SEAK +KILA A+KL+PMGF TAT+ H++R ++I ++TGS ELDK+L GG+ETGSITE++GEFRTGKTQ+CHTL VTCQLP+D+GG EGK
Sbjct:   17 EESFGPQPVSRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRRSEIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGK 156
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114008.2910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2C9JDB7_BIOGL2.270e-6468.57DNA repair protein RAD51 homolog n=7 Tax=Gastropod... [more]
Q1WBR2_PHYPO2.170e-6364.79Rad51 (Fragment) n=1 Tax=Physarum polycephalum Tax... [more]
A0A3P9MWD1_POERE4.230e-6365.71RAD51 recombinase n=3 Tax=Percomorphaceae TaxID=14... [more]
A0A7S4ML14_9EUKA6.020e-6369.29DNA repair protein RAD51 homolog n=1 Tax=Vannella ... [more]
A0A2K6M7Q9_RHIBE6.390e-6365.71RECA_2 domain-containing protein n=10 Tax=Boreoeut... [more]
UPI0007ACCEC49.690e-6365.71DNA repair protein RAD51 homolog A-like n=1 Tax=Si... [more]
A0A482VJ29_9CUCU1.280e-6268.31DNA repair protein RAD51 homolog n=1 Tax=Asbolus v... [more]
A0A8D1AIL7_PIG2.280e-6265.00Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]
A0A7L4N058_9AVES2.580e-6266.43RAD51 protein (Fragment) n=3 Tax=Neognathae TaxID=... [more]
F7IGA0_CALJA2.740e-6266.43RAD51 recombinase n=32 Tax=Amniota TaxID=32524 Rep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114008contigM-pyrifera_M_contig114008:3..428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score200.3
Seed ortholog evalue5.7e-49
Seed eggNOG ortholog6500.XP_005095899.1
Preferred nameRAD51
KEGG koko:K04482
KEGG Pathwayko03440,ko03460,ko05200,ko05212,map03440,map03460,map05200,map05212
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000150,GO:0000166,GO:0000217,GO:0000228,GO:0000280,GO:0000400,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000730,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000795,GO:0000800,GO:0001709,GO:0001932,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006268,GO:0006281,GO:0006282,GO:0006302,GO:0006310,GO:0006312,GO:0006323,GO:0006403,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007143,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007294,GO:0007389,GO:0008022,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008298,GO:0008630,GO:0009058,GO:0009059,GO:0009314,GO:0009410,GO:0009628,GO:0009653,GO:0009719,GO:0009790,GO:0009792,GO:0009798,GO:0009893,GO:0009948,GO:0009949,GO:0009950,GO:0009951,GO:0009952,GO:0009953,GO:0009987,GO:0009994,GO:0010032,GO:0010033,GO:0010035,GO:0010212,GO:0010243,GO:0010564,GO:0010569,GO:0010604,GO:0010833,GO:0010941,GO:0010948,GO:0012501,GO:0014070,GO:0014074,GO:0016043,GO:0016462,GO:0016604,GO:0016605,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017151,GO:0019219,GO:0019220,GO:0019222,GO:0019899,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030154,GO:0030261,GO:0030554,GO:0030706,GO:0030716,GO:0030717,GO:0031000,GO:0031297,GO:0031323,GO:0031325,GO:0031399,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0035556,GO:0035639,GO:0035690,GO:0035825,GO:0035861,GO:0036094,GO:0036270,GO:0036297,GO:0042148,GO:0042221,GO:0042325,GO:0042493,GO:0042592,GO:0042623,GO:0042771,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043073,GO:0043142,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043279,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0045003,GO:0045005,GO:0045165,GO:0045786,GO:0045935,GO:0046483,GO:0048285,GO:0048468,GO:0048471,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051105,GO:0051106,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051259,GO:0051260,GO:0051276,GO:0051321,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0060548,GO:0061982,GO:0061988,GO:0065001,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070182,GO:0070192,GO:0070316,GO:0070317,GO:0070727,GO:0070887,GO:0071103,GO:0071214,GO:0071241,GO:0071310,GO:0071312,GO:0071407,GO:0071417,GO:0071478,GO:0071479,GO:0071495,GO:0071704,GO:0071824,GO:0071840,GO:0072331,GO:0072332,GO:0072710,GO:0072711,GO:0072757,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0090735,GO:0097159,GO:0097190,GO:0097193,GO:0097305,GO:0097306,GO:0097327,GO:0097329,GO:0097367,GO:0098687,GO:0099086,GO:0104004,GO:0140013,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1901563,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903046,GO:1990414,GO:2000779,GO:2001020
EggNOG free text desc.Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange
EggNOG OGs38CS4@33154,3BA4U@33208,3CU4D@33213,COG0468@1,KOG1433@2759
Ec32 ortholog descriptionMeiotic recombination protein DMC1/LIM15 homolog
Ec32 orthologEc-24_003430.1
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400,ko04121,ko04131
Exons1
Model size426
Cds size402
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.8258564-CDS-M-pyrifera_M_contig114008:2..4041622815654.8258564-CDS-M-pyrifera_M_contig114008:2..404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114008 3..404 -
1692277506.9992409-CDS-M-pyrifera_M_contig114008:2..4041692277506.9992409-CDS-M-pyrifera_M_contig114008:2..404Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114008 3..404 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.8747394-UTR-M-pyrifera_M_contig114008:404..4281622815654.8747394-UTR-M-pyrifera_M_contig114008:404..428Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114008 405..428 -
1692277507.011924-UTR-M-pyrifera_M_contig114008:404..4281692277507.011924-UTR-M-pyrifera_M_contig114008:404..428Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114008 405..428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114008.2910.1prot_M-pyrifera_M_contig114008.2910.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114008 3..404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114008.2910.1

>prot_M-pyrifera_M_contig114008.2910.1 ID=prot_M-pyrifera_M_contig114008.2910.1|Name=mRNA_M-pyrifera_M_contig114008.2910.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MPVAQLELNGISAGDVKKLSEGGFNTVEAVAYATKKMLVSVRGLSEAKVE
KILAAASKLIPMGFQTATDVHRQRQDVIYLSTGSTELDKILHGGMETGSI
TELYGEFRTGKTQLCHTLCVTCQLPLDQGGAEGK
back to top

mRNA from alignment at M-pyrifera_M_contig114008:3..428-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114008.2910.1 ID=mRNA_M-pyrifera_M_contig114008.2910.1|Name=mRNA_M-pyrifera_M_contig114008.2910.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig114008:3..428- (Macrocystis pyrifera P11B4 male)
GATGTGCAGGAGGTTGGAGGGCCGATGCCGGTGGCGCAGCTGGAGCTGAA
CGGCATCAGCGCTGGAGATGTGAAGAAGCTGAGTGAGGGAGGGTTCAACA
CGGTGGAGGCGGTGGCATACGCAACGAAGAAGATGCTGGTGTCCGTGCGC
GGGCTGAGCGAAGCGAAAGTGGAGAAGATTCTCGCTGCTGCCTCCAAGCT
CATCCCAATGGGCTTTCAGACTGCGACGGATGTGCATCGGCAGCGTCAAG
ACGTCATCTACCTGTCCACCGGCTCCACTGAGCTGGACAAGATTCTGCAC
GGAGGCATGGAGACCGGCAGCATCACTGAGCTGTACGGCGAGTTCCGCAC
TGGCAAGACGCAGCTGTGCCACACGCTCTGCGTCACGTGCCAGCTGCCGT
TGGACCAGGGCGGCGCGGAGGGCAAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig114008:3..428-

>mRNA_M-pyrifera_M_contig114008.2910.1 ID=mRNA_M-pyrifera_M_contig114008.2910.1|Name=mRNA_M-pyrifera_M_contig114008.2910.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig114008:3..428- (Macrocystis pyrifera P11B4 male)
ATGCCGGTGGCGCAGCTGGAGCTGAACGGCATCAGCGCTGGAGATGTGAA
GAAGCTGAGTGAGGGAGGGTTCAACACGGTGGAGGCGGTGGCATACGCAA
CGAAGAAGATGCTGGTGTCCGTGCGCGGGCTGAGCGAAGCGAAAGTGGAG
AAGATTCTCGCTGCTGCCTCCAAGCTCATCCCAATGGGCTTTCAGACTGC
GACGGATGTGCATCGGCAGCGTCAAGACGTCATCTACCTGTCCACCGGCT
CCACTGAGCTGGACAAGATTCTGCACGGAGGCATGGAGACCGGCAGCATC
ACTGAGCTGTACGGCGAGTTCCGCACTGGCAAGACGCAGCTGTGCCACAC
GCTCTGCGTCACGTGCCAGCTGCCGTTGGACCAGGGCGGCGCGGAGGGCA
AGATGCCGGTGGCGCAGCTGGAGCTGAACGGCATCAGCGCTGGAGATGTG
AAGAAGCTGAGTGAGGGAGGGTTCAACACGGTGGAGGCGGTGGCATACGC
AACGAAGAAGATGCTGGTGTCCGTGCGCGGGCTGAGCGAAGCGAAAGTGG
AGAAGATTCTCGCTGCTGCCTCCAAGCTCATCCCAATGGGCTTTCAGACT
GCGACGGATGTGCATCGGCAGCGTCAAGACGTCATCTACCTGTCCACCGG
CTCCACTGAGCTGGACAAGATTCTGCACGGAGGCATGGAGACCGGCAGCA
TCACTGAGCTGTACGGCGAGTTCCGCACTGGCAAGACGCAGCTGTGCCAC
ACGCTCTGCGTCACGTGCCAGCTGCCGTTGGACCAGGGCGGCGCGGAGGG
CAAG
back to top