mRNA_M-pyrifera_M_contig114004.2909.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114004.2909.1
Unique NamemRNA_M-pyrifera_M_contig114004.2909.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114004.2909.1 vs. uniprot
Match: A0A6P4HGU2_DROTK (vacuolar protein sorting-associated protein 13A isoform X1 n=3 Tax=Drosophila takahashii TaxID=29030 RepID=A0A6P4HGU2_DROTK)

HSP 1 Score: 57.0 bits (136), Expect = 2.910e-8
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GSLGKLRLKIPWKNLRSQPAVVSIERVFILVGPTAEAEYSEEQES 135
            G LGKL LKIPWKNL SQP VV+IE ++ LV P    +Y+EE+E+
Sbjct:   60 GYLGKLVLKIPWKNLYSQPVVVNIEDLYALVSPNNNVQYNEEKEA 104
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BLAST of mRNA_M-pyrifera_M_contig114004.2909.1 vs. uniprot
Match: A0A1W4UZM7_DROFC (vacuolar protein sorting-associated protein 13C n=1 Tax=Drosophila ficusphila TaxID=30025 RepID=A0A1W4UZM7_DROFC)

HSP 1 Score: 56.2 bits (134), Expect = 5.440e-8
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GSLGKLRLKIPWKNLRSQPAVVSIERVFILVGPTAEAEYSEEQES 135
            G LGKL LKIPWKNL SQP VV+IE +++LV P    +Y+ E+E+
Sbjct:   60 GYLGKLVLKIPWKNLYSQPVVVNIEDLYVLVSPNNNVQYNAEKEA 104
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BLAST of mRNA_M-pyrifera_M_contig114004.2909.1 vs. uniprot
Match: A0A6J2UL63_DROLE (vacuolar protein sorting-associated protein 13 n=1 Tax=Drosophila lebanonensis TaxID=7225 RepID=A0A6J2UL63_DROLE)

HSP 1 Score: 56.2 bits (134), Expect = 5.440e-8
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 GSLGKLRLKIPWKNLRSQPAVVSIERVFILVGPTAEAEYSEEQES 135
            G LGKL LKIPWKNL SQP +V IE +++LV P    EY+ E+E+
Sbjct:   60 GYLGKLVLKIPWKNLYSQPVIVDIEDLYVLVSPKNNVEYNAEKEA 104
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BLAST of mRNA_M-pyrifera_M_contig114004.2909.1 vs. uniprot
Match: B4H8J1_DROPE (GL20017 n=5 Tax=pseudoobscura subgroup TaxID=32358 RepID=B4H8J1_DROPE)

HSP 1 Score: 55.8 bits (133), Expect = 7.440e-8
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GSLGKLRLKIPWKNLRSQPAVVSIERVFILVGPTAEAEYSEEQES 135
            G LGKL LKIPWKNL SQP +V+IE +++LV P    +Y+ E+E+
Sbjct:   60 GYLGKLVLKIPWKNLYSQPVIVNIEDLYVLVSPNNNVQYNAEKEA 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig114004.2909.1 vs. uniprot
Match: A0A3B0J766_DROGU (Blast:Vacuolar protein sorting-associated protein 13A n=6 Tax=obscura subgroup TaxID=32357 RepID=A0A3B0J766_DROGU)

HSP 1 Score: 55.8 bits (133), Expect = 7.440e-8
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GSLGKLRLKIPWKNLRSQPAVVSIERVFILVGPTAEAEYSEEQES 135
            G LGKL LKIPWKNL SQP VV+IE +++LV P    +Y+ E+E+
Sbjct:   60 GYLGKLVLKIPWKNLYSQPVVVNIEDLYVLVSPNNNVKYNAEKEA 104
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BLAST of mRNA_M-pyrifera_M_contig114004.2909.1 vs. uniprot
Match: VPS13_DROME (Intermembrane lipid transfer protein Vps13 n=11 Tax=melanogaster subgroup TaxID=32351 RepID=VPS13_DROME)

HSP 1 Score: 55.8 bits (133), Expect = 7.440e-8
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GSLGKLRLKIPWKNLRSQPAVVSIERVFILVGPTAEAEYSEEQES 135
            G LGKL LKIPWKNL SQP +V+IE +++LV P    +Y+ E+E+
Sbjct:   60 GYLGKLVLKIPWKNLYSQPVIVNIEDLYVLVSPNNNVQYNAEKEA 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig114004.2909.1 vs. uniprot
Match: UPI0007E6DD7E (vacuolar protein sorting-associated protein 13 n=1 Tax=Drosophila eugracilis TaxID=29029 RepID=UPI0007E6DD7E)

HSP 1 Score: 55.8 bits (133), Expect = 7.440e-8
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GSLGKLRLKIPWKNLRSQPAVVSIERVFILVGPTAEAEYSEEQES 135
            G LGKL LKIPWKNL SQP +V+IE +++LV P    +Y+ E+E+
Sbjct:   60 GYLGKLVLKIPWKNLYSQPVIVNIEDLYVLVSPNNNVQYNAEKEA 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig114004.2909.1 vs. uniprot
Match: A0A6P4FK11_DRORH (LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A n=2 Tax=Drosophila rhopaloa TaxID=1041015 RepID=A0A6P4FK11_DRORH)

HSP 1 Score: 55.8 bits (133), Expect = 7.440e-8
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GSLGKLRLKIPWKNLRSQPAVVSIERVFILVGPTAEAEYSEEQES 135
            G LGKL LKIPWKNL SQP +V+IE +++LV P    +Y+ E+E+
Sbjct:   60 GYLGKLVLKIPWKNLYSQPVIVNIEDLYVLVSPNNNVQYNAEKEA 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig114004.2909.1 vs. uniprot
Match: B4HR39_DROSE (GM20964 n=1 Tax=Drosophila sechellia TaxID=7238 RepID=B4HR39_DROSE)

HSP 1 Score: 55.8 bits (133), Expect = 7.450e-8
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:    1 GSLGKLRLKIPWKNLRSQPAVVSIERVFILVGPTAEAEYSEEQES 135
            G LGKL LKIPWKNL SQP +V+IE +++LV P    +Y+ E+E+
Sbjct:   60 GYLGKLVLKIPWKNLYSQPVIVNIEDLYVLVSPNNNVQYNAEKEA 104
[Close]
BLAST of mRNA_M-pyrifera_M_contig114004.2909.1 vs. uniprot
Match: UPI001F4F4E35 (vacuolar protein sorting-associated protein 13-like n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F4F4E35)

HSP 1 Score: 55.5 bits (132), Expect = 1.020e-7
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 GSLGKLRLKIPWKNLRSQPAVVSIERVFILVGPTAEAEYSEEQE 132
            G LGKL LKIPW+NL S P + SIER+F+LV P  E +Y  E+E
Sbjct:   60 GHLGKLVLKIPWRNLYSAPVIASIERLFLLVVPNQEIKYDAEKE 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114004.2909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P4HGU2_DROTK2.910e-860.00vacuolar protein sorting-associated protein 13A is... [more]
A0A1W4UZM7_DROFC5.440e-857.78vacuolar protein sorting-associated protein 13C n=... [more]
A0A6J2UL63_DROLE5.440e-857.78vacuolar protein sorting-associated protein 13 n=1... [more]
B4H8J1_DROPE7.440e-855.56GL20017 n=5 Tax=pseudoobscura subgroup TaxID=32358... [more]
A0A3B0J766_DROGU7.440e-857.78Blast:Vacuolar protein sorting-associated protein ... [more]
VPS13_DROME7.440e-855.56Intermembrane lipid transfer protein Vps13 n=11 Ta... [more]
UPI0007E6DD7E7.440e-855.56vacuolar protein sorting-associated protein 13 n=1... [more]
A0A6P4FK11_DRORH7.440e-855.56LOW QUALITY PROTEIN: vacuolar protein sorting-asso... [more]
B4HR39_DROSE7.450e-855.56GM20964 n=1 Tax=Drosophila sechellia TaxID=7238 Re... [more]
UPI001F4F4E351.020e-759.09vacuolar protein sorting-associated protein 13-lik... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114004contigM-pyrifera_M_contig114004:440..574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.7725859-CDS-M-pyrifera_M_contig114004:439..5741622815654.7725859-CDS-M-pyrifera_M_contig114004:439..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114004 440..574 +
1692277506.9880743-CDS-M-pyrifera_M_contig114004:439..5741692277506.9880743-CDS-M-pyrifera_M_contig114004:439..574Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114004 440..574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114004.2909.1prot_M-pyrifera_M_contig114004.2909.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114004 440..574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114004.2909.1

>prot_M-pyrifera_M_contig114004.2909.1 ID=prot_M-pyrifera_M_contig114004.2909.1|Name=mRNA_M-pyrifera_M_contig114004.2909.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=45bp
GSLGKLRLKIPWKNLRSQPAVVSIERVFILVGPTAEAEYSEEQES
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mRNA from alignment at M-pyrifera_M_contig114004:440..574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114004.2909.1 ID=mRNA_M-pyrifera_M_contig114004.2909.1|Name=mRNA_M-pyrifera_M_contig114004.2909.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=135bp|location=Sequence derived from alignment at M-pyrifera_M_contig114004:440..574+ (Macrocystis pyrifera P11B4 male)
GGATCCTTGGGAAAGCTACGGCTGAAGATTCCATGGAAGAACCTCCGCTC
ACAGCCGGCGGTGGTGAGCATCGAGCGGGTGTTCATCCTCGTGGGCCCCA
CGGCAGAGGCAGAGTACAGCGAAGAGCAAGAGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114004:440..574+

>mRNA_M-pyrifera_M_contig114004.2909.1 ID=mRNA_M-pyrifera_M_contig114004.2909.1|Name=mRNA_M-pyrifera_M_contig114004.2909.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig114004:440..574+ (Macrocystis pyrifera P11B4 male)
GGATCCTTGGGAAAGCTACGGCTGAAGATTCCATGGAAGAACCTCCGCTC
ACAGCCGGCGGTGGTGAGCATCGAGCGGGTGTTCATCCTCGTGGGCCCCA
CGGCAGAGGCAGAGTACAGCGAAGAGCAAGAGAGCGGATCCTTGGGAAAG
CTACGGCTGAAGATTCCATGGAAGAACCTCCGCTCACAGCCGGCGGTGGT
GAGCATCGAGCGGGTGTTCATCCTCGTGGGCCCCACGGCAGAGGCAGAGT
ACAGCGAAGAGCAAGAGAGC
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