mRNA_M-pyrifera_M_contig113986.2899.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113986.2899.1
Unique NamemRNA_M-pyrifera_M_contig113986.2899.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113986.2899.1 vs. uniprot
Match: A0A397J0Q0_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J0Q0_9GLOM)

HSP 1 Score: 68.6 bits (166), Expect = 2.440e-11
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:    4 ALNFGSWETVLAKDRQAADCHGHAHVWLVRDDLELLLERFPERFAPVMTGRLRLPVDYVTVNCDNLETKRLLAAETKMVASGL 252
            A+NFG WE+  AKDR A DCHGH H+ L  D    L+ +  E +   M G++  P  Y  ++C+ LET RLL+ E   V S +
Sbjct:  264 AMNFGKWESEEAKDRSAVDCHGHLHLHLKLD----LVRKMEEEYK-AMRGKIEDPFQYGLLDCEQLETSRLLSFEMSNVRSDI 341
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BLAST of mRNA_M-pyrifera_M_contig113986.2899.1 vs. uniprot
Match: A0A8H3L9Y1_9GLOM (Uncharacterized protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3L9Y1_9GLOM)

HSP 1 Score: 64.7 bits (156), Expect = 4.370e-10
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    4 ALNFGSWETVLAKDRQAADCHGHAHVWLVRDDLELLLERFPERFAPVMTGRLRLPVDYVTVNCDNLETKRLLAAETKMVASGL 252
            A+NFG+WE+ LAKD+ A DCHGH H+ L  D    ++ +   ++  +  G++  P  Y  ++C  LET RL++ E   + +G+
Sbjct:  223 AMNFGTWESELAKDKNAVDCHGHLHLCLKLD----VVRKMEYKYLGIR-GKVNDPYHYGLLDCKELETSRLISPEISEIKAGI 300
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BLAST of mRNA_M-pyrifera_M_contig113986.2899.1 vs. uniprot
Match: A0A8H3L7F7_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3L7F7_9GLOM)

HSP 1 Score: 52.0 bits (123), Expect = 1.710e-5
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 1 
Query:    4 ALNFGSWETVLAKDRQAADCHGHAHVWL---VRDDLELLLERFPERFAPVMTGRLRLPVDYVTVNCDNLETKRLLAAE 228
            ++NFGSWE+  AKD+ A  CH H H+ L   V  ++E   +     + P + G++  P  +   +C  LET RL + E
Sbjct:  253 SINFGSWESETAKDKNALKCHAHFHIHLSKVVVHNMEQKKDINNHYYYPAIHGKINDPFQHRMKDCVELETLRLSSLE 330
[Close]
BLAST of mRNA_M-pyrifera_M_contig113986.2899.1 vs. uniprot
Match: A0A2Z6RN53_9GLOM (Uncharacterized protein n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RN53_9GLOM)

HSP 1 Score: 52.0 bits (123), Expect = 1.800e-5
Identity = 27/78 (34.62%), Postives = 42/78 (53.85%), Query Frame = 1 
Query:    4 ALNFGSWETVLAKDRQAADCHGHAHVWL---VRDDLELLLERFPERFAPVMTGRLRLPVDYVTVNCDNLETKRLLAAE 228
            ++NFGSWE+  AKD+ A  CH H H+ L   V  ++E   +     + P + G++  P  +   +C  LET RL + E
Sbjct:  433 SINFGSWESETAKDKNALKCHAHFHIHLSKVVVHNMEQKKDINNHYYYPAIHGKINDPFQHRMKDCVELETLRLSSLE 510
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113986.2899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A397J0Q0_9GLOM2.440e-1142.17Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A8H3L9Y1_9GLOM4.370e-1036.14Uncharacterized protein n=2 Tax=Rhizophagus clarus... [more]
A0A8H3L7F7_9GLOM1.710e-534.62Uncharacterized protein n=1 Tax=Rhizophagus clarus... [more]
A0A2Z6RN53_9GLOM1.800e-534.62Uncharacterized protein n=1 Tax=Rhizophagus clarus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113986contigM-pyrifera_M_contig113986:151..573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.0438106-CDS-M-pyrifera_M_contig113986:150..2811622815654.0438106-CDS-M-pyrifera_M_contig113986:150..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113986 151..281 +
1692277506.606331-CDS-M-pyrifera_M_contig113986:150..2811692277506.606331-CDS-M-pyrifera_M_contig113986:150..281Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113986 151..281 +
1622815654.0541813-CDS-M-pyrifera_M_contig113986:389..5731622815654.0541813-CDS-M-pyrifera_M_contig113986:389..573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113986 390..573 +
1692277506.6152472-CDS-M-pyrifera_M_contig113986:389..5731692277506.6152472-CDS-M-pyrifera_M_contig113986:389..573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113986 390..573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113986.2899.1prot_M-pyrifera_M_contig113986.2899.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113986 151..573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113986.2899.1

>prot_M-pyrifera_M_contig113986.2899.1 ID=prot_M-pyrifera_M_contig113986.2899.1|Name=mRNA_M-pyrifera_M_contig113986.2899.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
IALNFGSWETVLAKDRQAADCHGHAHVWLVRDDLELLLERFPERFAPVMT
GRLRLPVDYVTVNCDNLETKRLLAAETKMVASGLAQLSSKVDGVTSLLQE
VLSRL
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mRNA from alignment at M-pyrifera_M_contig113986:151..573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113986.2899.1 ID=mRNA_M-pyrifera_M_contig113986.2899.1|Name=mRNA_M-pyrifera_M_contig113986.2899.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig113986:151..573+ (Macrocystis pyrifera P11B4 male)
ATTGCTCTCAACTTTGGATCGTGGGAGACTGTGCTCGCGAAGGACCGCCA
GGCTGCAGACTGCCACGGCCACGCCCACGTTTGGCTGGTCCGTGACGACC
TGGAACTGCTCCTCGAGAGGTTTCCCGAACGGTGAGGAGCTCCTGACTTC
GCCCCTCTGTTCCTGCTTCTCTCTGGTTCTCCCGCTGTATTTTCTTCTCG
ACACAACTCCCTGTAAGTGCTCGTTGCTGACGTTTGCAGCTTTGCGCCAG
TTATGACTGGCAGGCTACGCCTCCCTGTGGACTATGTTACTGTAAACTGC
GACAACTTGGAAACGAAGCGACTCCTTGCGGCTGAGACCAAAATGGTTGC
CAGCGGCCTCGCGCAGCTGTCATCCAAGGTAGATGGCGTCACGAGCCTCC
TCCAAGAGGTGCTGAGTCGTCTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113986:151..573+

>mRNA_M-pyrifera_M_contig113986.2899.1 ID=mRNA_M-pyrifera_M_contig113986.2899.1|Name=mRNA_M-pyrifera_M_contig113986.2899.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig113986:151..573+ (Macrocystis pyrifera P11B4 male)
ATTGCTCTCAACTTTGGATCGTGGGAGACTGTGCTCGCGAAGGACCGCCA
GGCTGCAGACTGCCACGGCCACGCCCACGTTTGGCTGGTCCGTGACGACC
TGGAACTGCTCCTCGAGAGGTTTCCCGAACGATTGCTCTCAACTTTGGAT
CGTGGGAGACTGTGCTCGCGAAGGACCGCCAGGCTGCAGACTGCCACGGC
CACGCCCACGTTTGGCTGGTCCGTGACGACCTGGAACTGCTCCTCGAGAG
GTTTCCCGAACGCTTTGCGCCAGTTATGACTGGCAGGCTACGCCTCCCTG
TGGACTATGTTACTGTAAACTGCGACAACTTGGAAACGAAGCGACTCCTT
GCGGCTGAGACCAAAATGGTTGCCAGCGGCCTCGCGCAGCTGTCATCCAA
GGTAGATGGCGTCACGAGCCTCCTCCAAGAGGTGCTGAGTCGTCTACTTT
GCGCCAGTTATGACTGGCAGGCTACGCCTCCCTGTGGACTATGTTACTGT
AAACTGCGACAACTTGGAAACGAAGCGACTCCTTGCGGCTGAGACCAAAA
TGGTTGCCAGCGGCCTCGCGCAGCTGTCATCCAAGGTAGATGGCGTCACG
AGCCTCCTCCAAGAGGTGCTGAGTCGTCTA
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