mRNA_M-pyrifera_M_contig113972.2896.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113972.2896.1
Unique NamemRNA_M-pyrifera_M_contig113972.2896.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113972.2896.1 vs. uniprot
Match: D8LIA4_ECTSI (Kinesin-associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIA4_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.050e-26
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    1 TKAMPIVMQLVLNFPQKILAKELAALAVNLSLNPRNAQIMASQRGLHHLVDRVTETNDPLLMKV 192
            T AMPIVMQLVLNFPQK+LAKELAALAVNLSLNPRNAQ+MASQRGL HLVDRVTET DPLLMKV
Sbjct:  452 TDAMPIVMQLVLNFPQKMLAKELAALAVNLSLNPRNAQMMASQRGLPHLVDRVTETKDPLLMKV 515
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BLAST of mRNA_M-pyrifera_M_contig113972.2896.1 vs. uniprot
Match: A0A836C6Y4_9STRA (Kinesin-associated protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6Y4_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.640e-21
Identity = 47/63 (74.60%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    4 KAMPIVMQLVLNFPQKILAKELAALAVNLSLNPRNAQIMASQRGLHHLVDRVTETNDPLLMKV 192
            +A+PI+MQL+LNFPQK+LAKELAALA+NLSLN RNA++M +QRGL HL+DRV ET DP LMKV
Sbjct:  441 EAVPILMQLILNFPQKLLAKELAALAINLSLNERNAELMCAQRGLQHLMDRVVETRDPNLMKV 503
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BLAST of mRNA_M-pyrifera_M_contig113972.2896.1 vs. uniprot
Match: A0A8K1C6M2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C6M2_PYTOL)

HSP 1 Score: 85.1 bits (209), Expect = 8.750e-18
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 TKAMPIVMQLVLNFPQKILAKELAALAVNLSLNPRNAQIMASQRGLHHLVDRVTETNDPLLMKV 192
            T+A+PIVMQLV+NFPQ ++AKELAALAVNLSLN RNA++M   RGL  L  RV  T DPLLMKV
Sbjct:  321 TEAIPIVMQLVINFPQNMVAKELAALAVNLSLNARNAEMMCQNRGLEALASRVFRTRDPLLMKV 384
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BLAST of mRNA_M-pyrifera_M_contig113972.2896.1 vs. uniprot
Match: A0A3R7K8P0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K8P0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.630e-17
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 TKAMPIVMQLVLNFPQKILAKELAALAVNLSLNPRNAQIMASQRGLHHLVDRVTETNDPLLMKV 192
            T+A+PIVMQLV+NFPQ I+AKELAALAVNLS N RNA++M   RGL  L  RV  T DPLLMKV
Sbjct:  325 TEALPIVMQLVINFPQNIVAKELAALAVNLSHNARNAELMCQNRGLEALASRVFRTRDPLLMKV 388
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BLAST of mRNA_M-pyrifera_M_contig113972.2896.1 vs. uniprot
Match: H3GWU2_PHYRM (Uncharacterized protein n=21 Tax=Phytophthora TaxID=4783 RepID=H3GWU2_PHYRM)

HSP 1 Score: 83.6 bits (205), Expect = 3.040e-17
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 TKAMPIVMQLVLNFPQKILAKELAALAVNLSLNPRNAQIMASQRGLHHLVDRVTETNDPLLMKV 192
            T+A+PIVMQLV+NFPQ I+AKELAALAVNLS N RNA++M   RGL  L  RV  T DPLLMKV
Sbjct:  324 TEAIPIVMQLVINFPQNIVAKELAALAVNLSHNARNAELMCQNRGLEALATRVFRTRDPLLMKV 387
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BLAST of mRNA_M-pyrifera_M_contig113972.2896.1 vs. uniprot
Match: A0A812QE41_SYMMI (KAP115 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QE41_SYMMI)

HSP 1 Score: 83.2 bits (204), Expect = 4.050e-17
Identity = 39/64 (60.94%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 TKAMPIVMQLVLNFPQKILAKELAALAVNLSLNPRNAQIMASQRGLHHLVDRVTETNDPLLMKV 192
            T  MP++M +++NFPQ  L KELA L+VN+SLN RNA++MAS RGL+HL+DR+  T DPLLMK+
Sbjct:  125 TDGMPLIMGMIINFPQDTLPKELAGLSVNISLNARNAEVMASNRGLNHLMDRMMTTKDPLLMKI 188
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BLAST of mRNA_M-pyrifera_M_contig113972.2896.1 vs. uniprot
Match: D0P369_PHYIT (Kinesin-associated protein, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P369_PHYIT)

HSP 1 Score: 82.8 bits (203), Expect = 5.680e-17
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 TKAMPIVMQLVLNFPQKILAKELAALAVNLSLNPRNAQIMASQRGLHHLVDRVTETNDPLLMKV 192
            T+A+PIVMQLV+NFPQ I+AKELAAL+VNLS N RNA++M   RGL  L  RV  T DPLLMKV
Sbjct:  322 TEAVPIVMQLVINFPQNIVAKELAALSVNLSHNARNAELMCQNRGLEALASRVFRTRDPLLMKV 385
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BLAST of mRNA_M-pyrifera_M_contig113972.2896.1 vs. uniprot
Match: A0A662WWI7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WWI7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.410e-17
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 TKAMPIVMQLVLNFPQKILAKELAALAVNLSLNPRNAQIMASQRGLHHLVDRVTETNDPLLMKV 192
            T+A+PI+MQLV+NFPQ ++AKELAALAVNLS N RNA++M   RGL  L  RV  T DPLLMKV
Sbjct:  113 TEAIPIIMQLVINFPQNLVAKELAALAVNLSHNARNAELMCQNRGLEALATRVFRTRDPLLMKV 176
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BLAST of mRNA_M-pyrifera_M_contig113972.2896.1 vs. uniprot
Match: A0A2D4C5X8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5X8_PYTIN)

HSP 1 Score: 82.4 bits (202), Expect = 7.740e-17
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    1 TKAMPIVMQLVLNFPQKILAKELAALAVNLSLNPRNAQIMASQRGLHHLVDRVTETNDPLLMKV 192
            T A+PIVMQLV+NFPQ  +AKELAALAVNLS N RNA++M + RGL  L  RV  T DPLLMKV
Sbjct:  283 TDAIPIVMQLVINFPQNTVAKELAALAVNLSHNARNAELMCANRGLEALASRVVRTRDPLLMKV 346
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BLAST of mRNA_M-pyrifera_M_contig113972.2896.1 vs. uniprot
Match: A0A662WVG6_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVG6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.750e-17
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 TKAMPIVMQLVLNFPQKILAKELAALAVNLSLNPRNAQIMASQRGLHHLVDRVTETNDPLLMKV 192
            T+A+PI+MQLV+NFPQ ++AKELAALAVNLS N RNA++M   RGL  L  RV  T DPLLMKV
Sbjct:  319 TEAIPIIMQLVINFPQNLVAKELAALAVNLSHNARNAELMCQNRGLEALATRVFRTRDPLLMKV 382
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113972.2896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIA4_ECTSI1.050e-2692.19Kinesin-associated protein n=1 Tax=Ectocarpus sili... [more]
A0A836C6Y4_9STRA3.640e-2174.60Kinesin-associated protein n=1 Tax=Tribonema minus... [more]
A0A8K1C6M2_PYTOL8.750e-1870.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7K8P0_9STRA1.630e-1770.31Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3GWU2_PHYRM3.040e-1770.31Uncharacterized protein n=21 Tax=Phytophthora TaxI... [more]
A0A812QE41_SYMMI4.050e-1760.94KAP115 protein n=1 Tax=Symbiodinium microadriaticu... [more]
D0P369_PHYIT5.680e-1768.75Kinesin-associated protein, putative n=1 Tax=Phyto... [more]
A0A662WWI7_9STRA6.410e-1767.19Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A2D4C5X8_PYTIN7.740e-1768.75Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A662WVG6_9STRA7.750e-1767.19Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113972contigM-pyrifera_M_contig113972:133..327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog2880.D8LIA4
Preferred nameKIFAP3
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000228,GO:0000793,GO:0000794,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003008,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005783,GO:0005794,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005871,GO:0005875,GO:0005886,GO:0005929,GO:0005930,GO:0006810,GO:0006890,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007163,GO:0007165,GO:0007600,GO:0007605,GO:0007606,GO:0007608,GO:0008088,GO:0008089,GO:0008092,GO:0008104,GO:0008150,GO:0008285,GO:0009987,GO:0010638,GO:0010639,GO:0010941,GO:0010970,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016939,GO:0017111,GO:0019882,GO:0019884,GO:0019886,GO:0019894,GO:0022407,GO:0022409,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030155,GO:0030705,GO:0030951,GO:0030952,GO:0030993,GO:0031344,GO:0031345,GO:0031346,GO:0031503,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032838,GO:0032991,GO:0033036,GO:0033043,GO:0035720,GO:0035735,GO:0035869,GO:0036064,GO:0042073,GO:0042127,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044459,GO:0044463,GO:0044464,GO:0044782,GO:0045724,GO:0045785,GO:0046586,GO:0046587,GO:0046907,GO:0047496,GO:0048002,GO:0048193,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0060271,GO:0060491,GO:0060548,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0071944,GO:0072383,GO:0072384,GO:0072386,GO:0097014,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0098590,GO:0098930,GO:0099111,GO:0099518,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120033,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902018,GO:1902115,GO:1902116,GO:1902117,GO:1902855,GO:1902856,GO:1902857,GO:1905515,GO:1990075
EggNOG free text desc.positive regulation of calcium-dependent cell-cell adhesion
EggNOG OGsKOG1222@1,KOG1222@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size186
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815653.9058168-UTR-M-pyrifera_M_contig113972:132..1411622815653.9058168-UTR-M-pyrifera_M_contig113972:132..141Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113972 133..141 +
1692277506.557474-UTR-M-pyrifera_M_contig113972:132..1411692277506.557474-UTR-M-pyrifera_M_contig113972:132..141Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113972 133..141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815653.9194102-CDS-M-pyrifera_M_contig113972:141..3271622815653.9194102-CDS-M-pyrifera_M_contig113972:141..327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113972 142..327 +
1692277506.5703967-CDS-M-pyrifera_M_contig113972:141..3271692277506.5703967-CDS-M-pyrifera_M_contig113972:141..327Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113972 142..327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113972.2896.1prot_M-pyrifera_M_contig113972.2896.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113972 142..327 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113972.2896.1

>prot_M-pyrifera_M_contig113972.2896.1 ID=prot_M-pyrifera_M_contig113972.2896.1|Name=mRNA_M-pyrifera_M_contig113972.2896.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
MPIVMQLVLNFPQKILAKELAALAVNLSLNPRNAQIMASQRGLHHLVDRV
TETNDPLLMKVF
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mRNA from alignment at M-pyrifera_M_contig113972:133..327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113972.2896.1 ID=mRNA_M-pyrifera_M_contig113972.2896.1|Name=mRNA_M-pyrifera_M_contig113972.2896.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig113972:133..327+ (Macrocystis pyrifera P11B4 male)
ACCAAGGCCATGCCGATCGTGATGCAGCTCGTGCTCAACTTCCCCCAGAA
GATTCTCGCCAAGGAGCTCGCCGCGCTGGCGGTGAACCTCAGCCTCAACC
CGAGAAACGCTCAGATCATGGCGTCCCAACGGGGCCTGCACCACCTCGTC
GACAGGGTCACCGAGACCAACGACCCTCTTCTCATGAAGGTGTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113972:133..327+

>mRNA_M-pyrifera_M_contig113972.2896.1 ID=mRNA_M-pyrifera_M_contig113972.2896.1|Name=mRNA_M-pyrifera_M_contig113972.2896.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig113972:133..327+ (Macrocystis pyrifera P11B4 male)
ATGCCGATCGTGATGCAGCTCGTGCTCAACTTCCCCCAGAAGATTCTCGC
CAAGGAGCTCGCCGCGCTGGCGGTGAACCTCAGCCTCAACCCGAGAAACG
CTCAGATCATGGCGTCCCAACGGGGCCTGCACCACCTCGTCGACAGGGTC
ACCGAGACCAACGACCCTCTTCTCATGAAGGTGTTTATGCCGATCGTGAT
GCAGCTCGTGCTCAACTTCCCCCAGAAGATTCTCGCCAAGGAGCTCGCCG
CGCTGGCGGTGAACCTCAGCCTCAACCCGAGAAACGCTCAGATCATGGCG
TCCCAACGGGGCCTGCACCACCTCGTCGACAGGGTCACCGAGACCAACGA
CCCTCTTCTCATGAAGGTGTTT
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