mRNA_M-pyrifera_M_contig113895.2885.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113895.2885.1
Unique NamemRNA_M-pyrifera_M_contig113895.2885.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113895.2885.1 vs. uniprot
Match: A0A5A8D2V7_CAFRO (DUF1619 domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D2V7_CAFRO)

HSP 1 Score: 88.6 bits (218), Expect = 1.410e-17
Identity = 50/128 (39.06%), Postives = 78/128 (60.94%), Query Frame = 1 
Query:    1 SPCTKFSCTCVCDLTAGACDSGCCCDGDCSSDEKAAFSGSEEGCAPSGAAEAHLERCVDLENAAELAEVNAKHRMVVLQRQS-GAQSLLCIAVDNNPVVGTFLDDVDTLPSAVFSRDDISSLPSYASS 381
            SPCT+F CTC CDLTAG+CD+ CC          A+   ++  C P G +   +  CV++  A++LA +N K RM ++   + G + ++C+AVDN+P  G+FL D     +AVFSR D+++ P++  S
Sbjct:   50 SPCTRFDCTCTCDLTAGSCDANCCXXXXXXXXXXASARAADT-CLPEGPSSLAVLTCVEVGEASQLAAINTKARMFLVDAANRGLEGVVCVAVDNSPYAGSFLSDPGLPGAAVFSRTDVAADPTFVES 176
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BLAST of mRNA_M-pyrifera_M_contig113895.2885.1 vs. uniprot
Match: A0A7S3K434_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K434_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.160e-13
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 1 
Query:    7 CTKFSCTCVCDLTAGACDSGCCCDGDCSSDEKAAFSGSEEGCAPSGAAEAHLERCVDLENAAELAEVNAKHRMVVL-QRQSGAQSLLCIAVDNNPVVGTFLDD 312
            CT F CTC+CDLTAGACD  CCCD DC+ DEK  F    + C P G  +  + +C   +   ++ ++NAK  M      +S     LC+  DN+ + G F DD
Sbjct:   68 CTMFECTCICDLTAGACDYNCCCDDDCTQDEKERFENLND-CLPEGPVDDEITKCYTTK---QVDKINAKFPMTAKGTAKSSVDRALCVRYDNSDLRGEFFDD 166
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BLAST of mRNA_M-pyrifera_M_contig113895.2885.1 vs. uniprot
Match: A0A8K1FCV4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCV4_PYTOL)

HSP 1 Score: 57.4 bits (137), Expect = 7.670e-7
Identity = 40/106 (37.74%), Postives = 52/106 (49.06%), Query Frame = 1 
Query:    1 SPCTKFSCTCVCDLTAGACDSGCCCDGDCSSDEKAAFSGSEEGCAPSGAAEAHLERCVDLENAAELAEV-NAKHRMVVLQRQSG---AQSLLCIAVDNNPVVGTFL 306
            S C+ F C C CDLTAGACD  CCCD +C+S+                     L  CVD +  A   E  +A   +  L +      A S+LC+AVDNN VVG ++
Sbjct:   96 SSCSFFECACTCDLTAGACDPFCCCDAECTSEHVETVK--------------RLGLCVDTDPIAPSVEYCSADLTLSALSKSVDPLVAGSVLCVAVDNNEVVGDYI 187
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BLAST of mRNA_M-pyrifera_M_contig113895.2885.1 vs. uniprot
Match: K3WIH0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIH0_GLOUD)

HSP 1 Score: 56.6 bits (135), Expect = 1.780e-6
Identity = 40/101 (39.60%), Postives = 52/101 (51.49%), Query Frame = 1 
Query:    1 SPCTKFSCTCVCDLTAGACDSGCCCDGDCSSDEKAAFSGSEEGCAPSGAAEAHLERCVDLENAAELAEVNAKHRMVVLQRQSGAQSLLCIAVDNNPVVGTF 303
            S CT F C C CDLTAGACD  CCCD +C+S++ A         A S      +E C     A +LA       +  L     A+S+LC+A+DNN V G +
Sbjct:   56 SECTYFECKCACDLTAGACDPFCCCDAECTSEQLALVQSQGLCSADSSTTLPSVEYC-----ATDLAFGKQGSGVDPLI----AESVLCVAIDNNEVAGEY 147
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BLAST of mRNA_M-pyrifera_M_contig113895.2885.1 vs. uniprot
Match: A0A8K1C514_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C514_PYTOL)

HSP 1 Score: 56.2 bits (134), Expect = 2.530e-6
Identity = 40/106 (37.74%), Postives = 52/106 (49.06%), Query Frame = 1 
Query:    1 SPCTKFSCTCVCDLTAGACDSGCCCDGDCSSDEKAAFSGSEEGCAPSGAAEAHLERCVDLENAAELAEV-NAKHRMVVLQRQSG---AQSLLCIAVDNNPVVGTFL 306
            S C+ F C C CDLTAGACD  CCCD +C+S+                     L  CVD +  A   E  +A   +  L +      A S+LC+AVDNN VVG ++
Sbjct:   60 SSCSFFECACTCDLTAGACDPFCCCDPECTSEHVETVK--------------RLGLCVDTDPIAPSIEYCSADLTLSALSKSVDPLVAGSVLCVAVDNNEVVGDYI 151
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BLAST of mRNA_M-pyrifera_M_contig113895.2885.1 vs. uniprot
Match: A0A482T146_9ARCH (DUF1619 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T146_9ARCH)

HSP 1 Score: 49.3 bits (116), Expect = 3.220e-5
Identity = 21/31 (67.74%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:    7 CTKFSCTCVCDLTAGACDSGCCCDGDCSSDE 99
            C  F CTC+CDL AG CD GCCCD DCS+D+
Sbjct:   34 CDLFKCTCICDLRAGFCDFGCCCDPDCSADQ 64
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113895.2885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5A8D2V7_CAFRO1.410e-1739.06DUF1619 domain-containing protein n=3 Tax=Cafeteri... [more]
A0A7S3K434_9STRA5.160e-1340.78Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8K1FCV4_PYTOL7.670e-737.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WIH0_GLOUD1.780e-639.60Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1C514_PYTOL2.530e-637.74Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A482T146_9ARCH3.220e-567.74DUF1619 domain-containing protein n=1 Tax=archaeon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113895contigM-pyrifera_M_contig113895:5..460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue8.6e-09
Seed eggNOG ortholog42099.EPrPV00000016984
Preferred nameTCTN1
KEGG koko:K19382,ko:K19400
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0001701,GO:0001838,GO:0001841,GO:0002009,GO:0003002,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005929,GO:0006996,GO:0007275,GO:0007389,GO:0007399,GO:0007409,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008589,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009953,GO:0009966,GO:0009987,GO:0010646,GO:0016020,GO:0016043,GO:0016331,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021523,GO:0021532,GO:0021537,GO:0021904,GO:0021915,GO:0021953,GO:0021954,GO:0021955,GO:0021956,GO:0022008,GO:0022406,GO:0022607,GO:0023051,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030900,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035148,GO:0035239,GO:0035295,GO:0035869,GO:0036038,GO:0042995,GO:0043009,GO:0043226,GO:0044085,GO:0044421,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044463,GO:0044464,GO:0044782,GO:0048468,GO:0048513,GO:0048583,GO:0048598,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050794,GO:0051179,GO:0051640,GO:0051641,GO:0060271,GO:0060322,GO:0060429,GO:0060562,GO:0061512,GO:0061564,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072175,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0120039,GO:0140056,GO:1904491
EggNOG free text desc.Tectonic. Source PGD
EggNOG OGs1MG6U@121069,2CN93@1,2QUK6@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815653.346933-CDS-M-pyrifera_M_contig113895:4..4601622815653.346933-CDS-M-pyrifera_M_contig113895:4..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113895 5..460 -
1692277506.3241072-CDS-M-pyrifera_M_contig113895:4..4601692277506.3241072-CDS-M-pyrifera_M_contig113895:4..460Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113895 5..460 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113895.2885.1prot_M-pyrifera_M_contig113895.2885.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113895 5..460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113895.2885.1

>prot_M-pyrifera_M_contig113895.2885.1 ID=prot_M-pyrifera_M_contig113895.2885.1|Name=mRNA_M-pyrifera_M_contig113895.2885.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=152bp
SPCTKFSCTCVCDLTAGACDSGCCCDGDCSSDEKAAFSGSEEGCAPSGAA
EAHLERCVDLENAAELAEVNAKHRMVVLQRQSGAQSLLCIAVDNNPVVGT
FLDDVDTLPSAVFSRDDISSLPSYASSSSSASSSTSDRYSAGDVVLGAFS
TD
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mRNA from alignment at M-pyrifera_M_contig113895:5..460-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113895.2885.1 ID=mRNA_M-pyrifera_M_contig113895.2885.1|Name=mRNA_M-pyrifera_M_contig113895.2885.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=456bp|location=Sequence derived from alignment at M-pyrifera_M_contig113895:5..460- (Macrocystis pyrifera P11B4 male)
AGTCCGTGTACCAAGTTTTCTTGCACGTGCGTGTGTGACCTCACGGCTGG
GGCGTGCGATTCCGGGTGTTGTTGCGACGGGGACTGCAGTTCCGACGAGA
AGGCGGCGTTTTCGGGCAGCGAGGAGGGCTGCGCGCCCTCGGGGGCAGCA
GAGGCGCATCTGGAGCGGTGTGTGGATTTGGAGAACGCGGCAGAACTGGC
CGAAGTAAACGCGAAGCACCGAATGGTGGTCTTGCAGCGCCAATCAGGAG
CCCAGAGCCTGCTCTGCATCGCCGTGGACAACAACCCCGTGGTGGGAACG
TTTCTGGACGACGTGGATACGCTGCCATCCGCAGTATTTTCGCGTGACGA
TATCTCCTCGCTCCCTTCCTACGCTTCCTCCTCCTCCTCCGCCTCCTCCT
CCACGTCAGACCGCTACAGCGCGGGCGACGTGGTGTTGGGGGCGTTTTCC
ACGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113895:5..460-

>mRNA_M-pyrifera_M_contig113895.2885.1 ID=mRNA_M-pyrifera_M_contig113895.2885.1|Name=mRNA_M-pyrifera_M_contig113895.2885.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=912bp|location=Sequence derived from alignment at M-pyrifera_M_contig113895:5..460- (Macrocystis pyrifera P11B4 male)
AGTCCGTGTACCAAGTTTTCTTGCACGTGCGTGTGTGACCTCACGGCTGG
GGCGTGCGATTCCGGGTGTTGTTGCGACGGGGACTGCAGTTCCGACGAGA
AGGCGGCGTTTTCGGGCAGCGAGGAGGGCTGCGCGCCCTCGGGGGCAGCA
GAGGCGCATCTGGAGCGGTGTGTGGATTTGGAGAACGCGGCAGAACTGGC
CGAAGTAAACGCGAAGCACCGAATGGTGGTCTTGCAGCGCCAATCAGGAG
CCCAGAGCCTGCTCTGCATCGCCGTGGACAACAACCCCGTGGTGGGAACG
TTTCTGGACGACGTGGATACGCTGCCATCCGCAGTATTTTCGCGTGACGA
TATCTCCTCGCTCCCTTCCTACGCTTCCTCCTCCTCCTCCGCCTCCTCCT
CCACGTCAGACCGCTACAGCGCGGGCGACGTGGTGTTGGGGGCGTTTTCC
ACGGACAGTCCGTGTACCAAGTTTTCTTGCACGTGCGTGTGTGACCTCAC
GGCTGGGGCGTGCGATTCCGGGTGTTGTTGCGACGGGGACTGCAGTTCCG
ACGAGAAGGCGGCGTTTTCGGGCAGCGAGGAGGGCTGCGCGCCCTCGGGG
GCAGCAGAGGCGCATCTGGAGCGGTGTGTGGATTTGGAGAACGCGGCAGA
ACTGGCCGAAGTAAACGCGAAGCACCGAATGGTGGTCTTGCAGCGCCAAT
CAGGAGCCCAGAGCCTGCTCTGCATCGCCGTGGACAACAACCCCGTGGTG
GGAACGTTTCTGGACGACGTGGATACGCTGCCATCCGCAGTATTTTCGCG
TGACGATATCTCCTCGCTCCCTTCCTACGCTTCCTCCTCCTCCTCCGCCT
CCTCCTCCACGTCAGACCGCTACAGCGCGGGCGACGTGGTGTTGGGGGCG
TTTTCCACGGAC
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