mRNA_M-pyrifera_M_contig113887.2882.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113887.2882.1
Unique NamemRNA_M-pyrifera_M_contig113887.2882.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113887.2882.1 vs. uniprot
Match: A0A5A8E1R8_CAFRO (HECT domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E1R8_CAFRO)

HSP 1 Score: 171 bits (433), Expect = 2.870e-46
Identity = 87/165 (52.73%), Postives = 106/165 (64.24%), Query Frame = 1 
Query:    1 LTFVFPSFTGELVELCPGGSQRRVVRENREEFVALALQSRFHECLPAAIAMRRGLTSVVSARALRLFTWRELEELCCGTPYVDVDVLREHTQYQGGYSESDPVIQRFWKVFATLSNKDRANFIKFAWGRSRLPGARDRWPYAFKITRYTGSPPEKALPLAHTCFF 495
            +T+      G  +EL PGG+   V  E R  +   A ++RF E  PA  A+RRGL SVV ARALRLFTWRELE+  CG P VDV +LR +T Y GGY E  PVI+RFW+VF  +SN DR   ++FAWGRSRLP A D +   FK++R    PP   LPLAH CFF
Sbjct:  784 VTYSVEGLLGSAIELYPGGAAVPVPFEERVAYAEAAAEARFREFAPAVSAIRRGLESVVPARALRLFTWRELEQSACGDPLVDVALLRANTTYSGGYEEGHPVIERFWRVFGAMSNSDRGKIVRFAWGRSRLPRAGD-FRTKFKLSR---GPPPDHLPLAHVCFF 944
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BLAST of mRNA_M-pyrifera_M_contig113887.2882.1 vs. uniprot
Match: A0A5A8CGB6_CAFRO (HECT domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CGB6_CAFRO)

HSP 1 Score: 171 bits (433), Expect = 3.220e-46
Identity = 87/165 (52.73%), Postives = 106/165 (64.24%), Query Frame = 1 
Query:    1 LTFVFPSFTGELVELCPGGSQRRVVRENREEFVALALQSRFHECLPAAIAMRRGLTSVVSARALRLFTWRELEELCCGTPYVDVDVLREHTQYQGGYSESDPVIQRFWKVFATLSNKDRANFIKFAWGRSRLPGARDRWPYAFKITRYTGSPPEKALPLAHTCFF 495
            +T+      G  +EL PGG+   V  E R  +   A ++RF E  PA  A+RRGL SVV ARALRLFTWRELE+  CG P VDV +LR +T Y GGY E  PVI+RFW+VF  +SN DR   ++FAWGRSRLP A D +   FK++R    PP   LPLAH CFF
Sbjct: 1526 VTYSVEGLLGSAIELYPGGAAVPVPFEERVAYAEAAAEARFREFAPAVSAIRRGLESVVPARALRLFTWRELEQSACGDPLVDVALLRANTTYSGGYEEGHPVIERFWRVFGAMSNSDRGKIVRFAWGRSRLPRAGD-FRTKFKLSR---GPPPDHLPLAHVCFF 1686
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BLAST of mRNA_M-pyrifera_M_contig113887.2882.1 vs. uniprot
Match: A0A5A8CBF2_CAFRO (HECT domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CBF2_CAFRO)

HSP 1 Score: 171 bits (433), Expect = 3.230e-46
Identity = 87/165 (52.73%), Postives = 106/165 (64.24%), Query Frame = 1 
Query:    1 LTFVFPSFTGELVELCPGGSQRRVVRENREEFVALALQSRFHECLPAAIAMRRGLTSVVSARALRLFTWRELEELCCGTPYVDVDVLREHTQYQGGYSESDPVIQRFWKVFATLSNKDRANFIKFAWGRSRLPGARDRWPYAFKITRYTGSPPEKALPLAHTCFF 495
            +T+      G  +EL PGG+   V  E R  +   A ++RF E  PA  A+RRGL SVV ARALRLFTWRELE+  CG P VDV +LR +T Y GGY E  PVI+RFW+VF  +SN DR   ++FAWGRSRLP A D +   FK++R    PP   LPLAH CFF
Sbjct: 1597 VTYSVEGLLGSAIELYPGGAAVPVPFEERVAYAEAAAEARFREFAPAVSAIRRGLESVVPARALRLFTWRELEQSACGDPLVDVALLRANTTYSGGYEEGHPVIERFWRVFGAMSNSDRGKIVRFAWGRSRLPRAGD-FRTKFKLSR---GPPPDHLPLAHVCFF 1757
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BLAST of mRNA_M-pyrifera_M_contig113887.2882.1 vs. uniprot
Match: A0A6A4FIH1_9STRA (HECT domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FIH1_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.130e-43
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 1 
Query:    1 LTFVFPSFTGELVELCPGGSQRRVVRENREEFVALALQSRFHECLPAAIAMRRGLTSVVSARALRLFTWRELEELCCGTPYVDVDVLREHTQYQGGYSESDPVIQRFWKVFATLSNKDRANFIKFAWGRSRLPGARDRWPYAFKITRYTGSPPEKALPLAHTCFFTI 501
            L F   S TGE +EL PGG    V   NR E+  LA ++R  EC     AM RG  ++   R L L TW+ELE L CG+P +D+D+ + HT+Y G YSE DP +Q FW+V    S++ RA+F++FAWGRSRLP  R +WP  FK+++  G    ++LP+AHTCFF++
Sbjct: 1012 LRFTASSCTGEEIELVPGGRHLTVEFHNRLEYCRLAERARLEECSAQVAAMARGFATLFPRRVLTLLTWQELETLTCGSPKIDLDLWQRHTRYDG-YSEDDPTVQLFWEVLGEFSDEQRADFVRFAWGRSRLP--RGKWPQPFKLSKKGGRDATRSLPVAHTCFFSV 1175
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BLAST of mRNA_M-pyrifera_M_contig113887.2882.1 vs. uniprot
Match: A0A6G0PDT4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0PDT4_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.190e-43
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 1 
Query:    1 LTFVFPSFTGELVELCPGGSQRRVVRENREEFVALALQSRFHECLPAAIAMRRGLTSVVSARALRLFTWRELEELCCGTPYVDVDVLREHTQYQGGYSESDPVIQRFWKVFATLSNKDRANFIKFAWGRSRLPGARDRWPYAFKITRYTGSPPEKALPLAHTCFFTI 501
            L F   S TGE +EL PGG    V   NR E+  LA ++R  EC     AM RG  ++   R L L TW+ELE L CG+P +D+D+ + HT+Y G YSE DP +Q FW+V    S++ RA+F++FAWGRSRLP  R +WP  FK+++  G    ++LP+AHTCFF++
Sbjct: 3251 LRFTASSCTGEEIELVPGGRHLTVEFHNRLEYYRLAERARLEECSAQVAAMARGFATLFPRRVLTLLTWQELETLTCGSPKIDLDLWQRHTRYDG-YSEDDPTVQLFWEVLGEFSDEQRADFVRFAWGRSRLP--RGKWPQPFKLSKKGGRDATRSLPVAHTCFFSV 3414
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BLAST of mRNA_M-pyrifera_M_contig113887.2882.1 vs. uniprot
Match: A0A6G0LKD7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0LKD7_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.200e-43
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 1 
Query:    1 LTFVFPSFTGELVELCPGGSQRRVVRENREEFVALALQSRFHECLPAAIAMRRGLTSVVSARALRLFTWRELEELCCGTPYVDVDVLREHTQYQGGYSESDPVIQRFWKVFATLSNKDRANFIKFAWGRSRLPGARDRWPYAFKITRYTGSPPEKALPLAHTCFFTI 501
            L F   S TGE +EL PGG    V   NR E+  LA ++R  EC     AM RG  ++   R L L TW+ELE L CG+P +D+D+ + HT+Y G YSE DP +Q FW+V    S++ RA+F++FAWGRSRLP  R +WP  FK+++  G    ++LP+AHTCFF++
Sbjct: 4263 LRFTASSCTGEEIELVPGGRHLTVEFHNRLEYYRLAERARLEECSAQVAAMARGFATLFPRRVLTLLTWQELETLTCGSPKIDLDLWQRHTRYDG-YSEDDPTVQLFWEVLGEFSDEQRADFVRFAWGRSRLP--RGKWPQPFKLSKKGGRDATRSLPVAHTCFFSV 4426
[Close]
BLAST of mRNA_M-pyrifera_M_contig113887.2882.1 vs. uniprot
Match: A0A6A3ZVF6_9STRA (Uncharacterized protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3ZVF6_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.200e-43
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 1 
Query:    1 LTFVFPSFTGELVELCPGGSQRRVVRENREEFVALALQSRFHECLPAAIAMRRGLTSVVSARALRLFTWRELEELCCGTPYVDVDVLREHTQYQGGYSESDPVIQRFWKVFATLSNKDRANFIKFAWGRSRLPGARDRWPYAFKITRYTGSPPEKALPLAHTCFFTI 501
            L F   S TGE +EL PGG    V   NR E+  LA ++R  EC     AM RG  ++   R L L TW+ELE L CG+P +D+D+ + HT+Y G YSE DP +Q FW+V    S++ RA+F++FAWGRSRLP  R +WP  FK+++  G    ++LP+AHTCFF++
Sbjct: 4619 LRFTASSCTGEEIELVPGGRHLTVEFHNRLEYYRLAERARLEECSAQVAAMARGFATLFPRRVLTLLTWQELETLTCGSPKIDLDLWQRHTRYDG-YSEDDPTVQLFWEVLGEFSDEQRADFVRFAWGRSRLP--RGKWPQPFKLSKKGGRDATRSLPVAHTCFFSV 4782
[Close]
BLAST of mRNA_M-pyrifera_M_contig113887.2882.1 vs. uniprot
Match: A0A484EBI2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EBI2_BRELC)

HSP 1 Score: 162 bits (410), Expect = 4.160e-43
Identity = 77/167 (46.11%), Postives = 110/167 (65.87%), Query Frame = 1 
Query:    1 LTFVFPSFTGELVELCPGGSQRRVVRENREEFVALALQSRFHECLPAAIAMRRGLTSVVSARALRLFTWRELEELCCGTPYVDVDVLREHTQYQGGYSESDPVIQRFWKVFATLSNKDRANFIKFAWGRSRLPGARDRWPYAFKITRYTGSPPEKALPLAHTCFFTI 501
            L +   S TGE +EL PGG  R+V   NR E+  LA ++R  EC     AM RG  ++   R L L TW+ELE L CG+P +D+D+ + HT+Y G Y+E D  +Q FW+V   LS++ RA+F++FAWGRSRLP  R +WP  FK+++ +G    ++LP+AHTCFF++
Sbjct: 4846 LRYTASSCTGEEIELVPGGITRKVDFLNRLEYCRLAERARLEECSAQVAAMARGFATLFPRRVLTLLTWQELEILACGSPKIDLDLWKSHTRYDG-YAEEDVTVQLFWEVLGELSDEQRADFVRFAWGRSRLP--RGKWPQPFKLSKKSGRDATRSLPVAHTCFFSV 5009
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BLAST of mRNA_M-pyrifera_M_contig113887.2882.1 vs. uniprot
Match: G5A2G8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A2G8_PHYSP)

HSP 1 Score: 160 bits (406), Expect = 1.440e-42
Identity = 77/167 (46.11%), Postives = 107/167 (64.07%), Query Frame = 1 
Query:    1 LTFVFPSFTGELVELCPGGSQRRVVRENREEFVALALQSRFHECLPAAIAMRRGLTSVVSARALRLFTWRELEELCCGTPYVDVDVLREHTQYQGGYSESDPVIQRFWKVFATLSNKDRANFIKFAWGRSRLPGARDRWPYAFKITRYTGSPPEKALPLAHTCFFTI 501
            L F   S TGE +EL PGG    V   NR E+  LA ++R  EC     AM RG  ++   R L L TW+ELE L CG+P +D+D+ + HT+Y G Y+E DP +Q FW+  A  S++ RA+F++FAWGRSRLP  R +WP  FK+++  G    ++LP+AHTCFF++
Sbjct: 5644 LRFTASSCTGEEIELVPGGRHLTVGFYNRLEYCRLAERARLEECSAQVAAMARGFATLFPRRVLTLLTWQELEILTCGSPKIDLDLWQRHTRYDG-YAEDDPTVQLFWEALAEFSDEQRADFVRFAWGRSRLP--RGKWPQPFKLSKKGGRDATRSLPVAHTCFFSV 5807
[Close]
BLAST of mRNA_M-pyrifera_M_contig113887.2882.1 vs. uniprot
Match: A0A8J5MCV0_9STRA (HECT domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MCV0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 4.790e-42
Identity = 76/167 (45.51%), Postives = 107/167 (64.07%), Query Frame = 1 
Query:    1 LTFVFPSFTGELVELCPGGSQRRVVRENREEFVALALQSRFHECLPAAIAMRRGLTSVVSARALRLFTWRELEELCCGTPYVDVDVLREHTQYQGGYSESDPVIQRFWKVFATLSNKDRANFIKFAWGRSRLPGARDRWPYAFKITRYTGSPPEKALPLAHTCFFTI 501
            L F   S TGE +EL PGG Q  V   NR E+  LA ++R  EC     AM RG  ++   R L L TW+ELE L CG+P +D+++ + HT+Y G Y+E D  +Q FW+  A  S++ RA+F++FAWGRSRLP  R +WP  FK+++  G    ++LP+AHTCFF++
Sbjct: 1709 LRFTASSCTGEEIELAPGGRQLTVEFHNRLEYCRLAERARLEECSAQVAAMARGFATLFPRRVLTLLTWQELEILACGSPKIDLELWQRHTRYDG-YAEDDLTVQLFWEALAEFSDEQRADFVRFAWGRSRLP--RGKWPQPFKLSKKGGRDATRSLPVAHTCFFSV 1872
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113887.2882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E1R8_CAFRO2.870e-4652.73HECT domain-containing protein n=1 Tax=Cafeteria r... [more]
A0A5A8CGB6_CAFRO3.220e-4652.73HECT domain-containing protein n=1 Tax=Cafeteria r... [more]
A0A5A8CBF2_CAFRO3.230e-4652.73HECT domain-containing protein n=3 Tax=Cafeteria r... [more]
A0A6A4FIH1_9STRA1.130e-4346.71HECT domain-containing protein n=2 Tax=Phytophthor... [more]
A0A6G0PDT4_9STRA1.190e-4346.71Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6G0LKD7_9STRA1.200e-4346.71Uncharacterized protein n=3 Tax=Phytophthora fraga... [more]
A0A6A3ZVF6_9STRA1.200e-4346.71Uncharacterized protein n=3 Tax=Phytophthora fraga... [more]
A0A484EBI2_BRELC4.160e-4346.11Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
G5A2G8_PHYSP1.440e-4246.11Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A8J5MCV0_9STRA4.790e-4245.51HECT domain-containing protein n=1 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113887contigM-pyrifera_M_contig113887:2..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue3.7e-37
Seed eggNOG ortholog67593.Physo156922
KEGG koko:K10595
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain Homologous to E6-AP Carboxyl Terminus with
EggNOG OGs3QF0G@4776,COG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko03400,ko04121
Exons1
Model size501
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815653.1978068-CDS-M-pyrifera_M_contig113887:1..5021622815653.1978068-CDS-M-pyrifera_M_contig113887:1..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113887 2..502 -
1692277506.258255-CDS-M-pyrifera_M_contig113887:1..5021692277506.258255-CDS-M-pyrifera_M_contig113887:1..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113887 2..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113887.2882.1prot_M-pyrifera_M_contig113887.2882.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113887 2..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113887.2882.1

>prot_M-pyrifera_M_contig113887.2882.1 ID=prot_M-pyrifera_M_contig113887.2882.1|Name=mRNA_M-pyrifera_M_contig113887.2882.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
LTFVFPSFTGELVELCPGGSQRRVVRENREEFVALALQSRFHECLPAAIA
MRRGLTSVVSARALRLFTWRELEELCCGTPYVDVDVLREHTQYQGGYSES
DPVIQRFWKVFATLSNKDRANFIKFAWGRSRLPGARDRWPYAFKITRYTG
SPPEKALPLAHTCFFTI
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mRNA from alignment at M-pyrifera_M_contig113887:2..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113887.2882.1 ID=mRNA_M-pyrifera_M_contig113887.2882.1|Name=mRNA_M-pyrifera_M_contig113887.2882.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig113887:2..502- (Macrocystis pyrifera P11B4 male)
TTGACATTTGTCTTCCCATCATTTACCGGGGAACTTGTCGAGTTGTGCCC
TGGAGGTTCACAACGACGTGTCGTACGCGAGAACCGTGAAGAATTTGTCG
CTTTGGCATTGCAATCGCGTTTCCATGAATGTCTCCCGGCTGCAATCGCG
ATGCGTCGAGGTTTGACAAGTGTCGTATCTGCGAGAGCATTGCGATTGTT
TACTTGGCGAGAATTGGAGGAGTTGTGCTGTGGCACACCCTATGTTGATG
TTGATGTCCTCCGTGAGCACACACAATACCAAGGTGGATACTCGGAGAGT
GATCCAGTGATTCAAAGGTTTTGGAAAGTGTTTGCAACTTTGTCGAACAA
AGACAGAGCCAATTTCATCAAATTTGCTTGGGGTCGTTCTCGTCTCCCTG
GTGCACGTGATCGTTGGCCATATGCCTTCAAGATCACCCGCTACACAGGC
TCTCCACCCGAAAAAGCCCTGCCACTCGCACACACATGCTTCTTTACAAT
T
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113887:2..502-

>mRNA_M-pyrifera_M_contig113887.2882.1 ID=mRNA_M-pyrifera_M_contig113887.2882.1|Name=mRNA_M-pyrifera_M_contig113887.2882.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig113887:2..502- (Macrocystis pyrifera P11B4 male)
TTGACATTTGTCTTCCCATCATTTACCGGGGAACTTGTCGAGTTGTGCCC
TGGAGGTTCACAACGACGTGTCGTACGCGAGAACCGTGAAGAATTTGTCG
CTTTGGCATTGCAATCGCGTTTCCATGAATGTCTCCCGGCTGCAATCGCG
ATGCGTCGAGGTTTGACAAGTGTCGTATCTGCGAGAGCATTGCGATTGTT
TACTTGGCGAGAATTGGAGGAGTTGTGCTGTGGCACACCCTATGTTGATG
TTGATGTCCTCCGTGAGCACACACAATACCAAGGTGGATACTCGGAGAGT
GATCCAGTGATTCAAAGGTTTTGGAAAGTGTTTGCAACTTTGTCGAACAA
AGACAGAGCCAATTTCATCAAATTTGCTTGGGGTCGTTCTCGTCTCCCTG
GTGCACGTGATCGTTGGCCATATGCCTTCAAGATCACCCGCTACACAGGC
TCTCCACCCGAAAAAGCCCTGCCACTCGCACACACATGCTTCTTTACAAT
TTTGACATTTGTCTTCCCATCATTTACCGGGGAACTTGTCGAGTTGTGCC
CTGGAGGTTCACAACGACGTGTCGTACGCGAGAACCGTGAAGAATTTGTC
GCTTTGGCATTGCAATCGCGTTTCCATGAATGTCTCCCGGCTGCAATCGC
GATGCGTCGAGGTTTGACAAGTGTCGTATCTGCGAGAGCATTGCGATTGT
TTACTTGGCGAGAATTGGAGGAGTTGTGCTGTGGCACACCCTATGTTGAT
GTTGATGTCCTCCGTGAGCACACACAATACCAAGGTGGATACTCGGAGAG
TGATCCAGTGATTCAAAGGTTTTGGAAAGTGTTTGCAACTTTGTCGAACA
AAGACAGAGCCAATTTCATCAAATTTGCTTGGGGTCGTTCTCGTCTCCCT
GGTGCACGTGATCGTTGGCCATATGCCTTCAAGATCACCCGCTACACAGG
CTCTCCACCCGAAAAAGCCCTGCCACTCGCACACACATGCTTCTTTACAA
TT
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