mRNA_M-pyrifera_M_contig113842.2869.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113842.2869.1
Unique NamemRNA_M-pyrifera_M_contig113842.2869.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113842.2869.1 vs. uniprot
Match: A0A8J8WMU9_9EURO (Uncharacterized protein n=1 Tax=Penicillium sp. RFL-2021a TaxID=2839758 RepID=A0A8J8WMU9_9EURO)

HSP 1 Score: 55.5 bits (132), Expect = 2.110e-7
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    7 DCLQELLKKAATISVLQRRKTINATNHFGASPLHWAAVWDSVDCMRLLIEAGANVHAKQHNNQTALHSAAKA 222
            + L  LL+K + +   QR   +N +NH G +PLHWAA+   ++C++ L+EAGA+V  K      A+  A +A
Sbjct:   84 EILNALLQKLSPLDAAQRTAFVNHSNHSGNTPLHWAALNTHLECVKALVEAGADVALKNDAGHDAMFLAERA 155          
BLAST of mRNA_M-pyrifera_M_contig113842.2869.1 vs. uniprot
Match: S8A178_PENO1 (Uncharacterized protein n=1 Tax=Penicillium oxalicum (strain 114-2 / CGMCC 5302) TaxID=933388 RepID=S8A178_PENO1)

HSP 1 Score: 54.7 bits (130), Expect = 4.060e-7
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    7 DCLQELLKKAATISVLQRRKTINATNHFGASPLHWAAVWDSVDCMRLLIEAGANVHAKQHNNQTALHSAAKA 222
            + L  LL+K +++   QR   +N  NH G +PLHWAA+   ++C++ L+EAGA+V  K      A+  A +A
Sbjct:   84 EILTTLLQKLSSLDTAQRTAFVNHPNHSGNTPLHWAALNTHLECVKALVEAGADVAIKNDAGHDAVFLAERA 155          
BLAST of mRNA_M-pyrifera_M_contig113842.2869.1 vs. uniprot
Match: A0A0F7TYA7_PENBI (Uncharacterized protein n=3 Tax=Penicillium TaxID=5073 RepID=A0A0F7TYA7_PENBI)

HSP 1 Score: 53.1 bits (126), Expect = 1.470e-6
Identity = 27/72 (37.50%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    7 DCLQELLKKAATISVLQRRKTINATNHFGASPLHWAAVWDSVDCMRLLIEAGANVHAKQHNNQTALHSAAKA 222
            + L  LL+K +++   QR   +N  NH G +PLHWAA+   ++C++ L+EAGA+V  K      A+  A +A
Sbjct:   84 EILNTLLQKLSSLDADQRTAFVNHRNHSGNTPLHWAALNTHLECVKGLVEAGADVAIKNDAGHDAMFLAERA 155          
BLAST of mRNA_M-pyrifera_M_contig113842.2869.1 vs. uniprot
Match: A0A1L9WUH5_ASPA1 (Uncharacterized protein n=7 Tax=Aspergillus TaxID=5052 RepID=A0A1L9WUH5_ASPA1)

HSP 1 Score: 52.8 bits (125), Expect = 1.930e-6
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:    1 HVDCLQELLKKAATISVLQRRKTINATNHFGASPLHWAAVWDSVDCMRLLIEAGANVHAK 180
            +++ L  LL   AT     RR+ +N  NH G +PLHWAA+   +DC++ L+EAGA+   K
Sbjct:   74 NIEILTYLLTLLATEEESTRRRIVNHRNHSGNTPLHWAALNTHLDCVKALVEAGADSSVK 133          
BLAST of mRNA_M-pyrifera_M_contig113842.2869.1 vs. uniprot
Match: A0A2G6QMV3_9SPIR (Uncharacterized protein n=1 Tax=Treponema sp. TaxID=166 RepID=A0A2G6QMV3_9SPIR)

HSP 1 Score: 52.4 bits (124), Expect = 4.320e-6
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   52 LQRRKTINATNHFGASPLHWAAVWDSVDCMRLLIEAGANVHAKQHNNQTALHSAAKA 222
            L  +KTINA +  G +PLH AA W S D +  +++ G  ++AK  NN+ AL SA KA
Sbjct:  523 LLNKKTINAKDGNGNTPLHLAAEWKSADMITYILDNGGKINAKNENNENALFSAVKA 579          
BLAST of mRNA_M-pyrifera_M_contig113842.2869.1 vs. uniprot
Match: T1EI80_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EI80_HELRO)

HSP 1 Score: 48.5 bits (114), Expect = 9.460e-6
Identity = 21/67 (31.34%), Postives = 40/67 (59.70%), Query Frame = 1
Query:    1 HVDCLQELLKKAATISVLQRRKTINATNHFGASPLHWAAVWDSVDCMRLLIEAGANVHAKQHNNQTA 201
            H  C++   +    I +L +   +N+ N  G + LH++A+W  +DC+++L+  GA+V+ K  N +TA
Sbjct:    6 HCACIEG--QAGFAIELLDKGVNVNSANENGYTALHYSAMWSQLDCLKVLLNKGADVNLKTLNEETA 70          
BLAST of mRNA_M-pyrifera_M_contig113842.2869.1 vs. uniprot
Match: A0A7I7WGN9_9MYCO (Uncharacterized protein n=1 Tax=Mycobacterium branderi TaxID=43348 RepID=A0A7I7WGN9_9MYCO)

HSP 1 Score: 50.1 bits (118), Expect = 1.100e-5
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   28 KKAATISVLQRRKTINATNHFGASPLHWAAVWDSVDCMRLLIEAGANVHAKQHNNQTALH 207
            K A T  +L     +NA +  G +PLH AA+ DSVD +R+L+EAGA  +A  +  +TAL+
Sbjct:   48 KIADTTKLLNEGADVNAADFEGLTPLHAAAIRDSVDVVRILLEAGAGPNAADNRGETALY 107          
BLAST of mRNA_M-pyrifera_M_contig113842.2869.1 vs. uniprot
Match: A0A1V6TC25_9EURO (Uncharacterized protein n=1 Tax=Penicillium steckii TaxID=303698 RepID=A0A1V6TC25_9EURO)

HSP 1 Score: 50.4 bits (119), Expect = 1.480e-5
Identity = 27/74 (36.49%), Postives = 43/74 (58.11%), Query Frame = 1
Query:    1 HVDCLQELLKKAATISVLQRRKTINATNHFGASPLHWAAVWDSVDCMRLLIEAGANVHAKQHNNQTALHSAAKA 222
            +++ L  LL+K +     QR   IN TN+ G + LHWAA+   ++C++ L+EAGA+V  K      A+  A +A
Sbjct:   82 NIEILNFLLQKLSAGDAAQRTTFINHTNYSGNTSLHWAALNTHLECVKALVEAGADVAIKNDAGHDAVFLAERA 155          
BLAST of mRNA_M-pyrifera_M_contig113842.2869.1 vs. uniprot
Match: A0A8H3FXA1_9LECA (Uncharacterized protein n=1 Tax=Imshaugia aleurites TaxID=172621 RepID=A0A8H3FXA1_9LECA)

HSP 1 Score: 50.1 bits (118), Expect = 2.820e-5
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   58 RRKTINATNHFGASPLHWAAVWDSVDCMRLLIEAGANVHAKQHNNQTALHSA 213
            +R  IN  N +  +PLH AA W SV+C+RLL+EAGA+ + +Q + Q  LH A
Sbjct:  584 QRLNINQANRWAETPLHVAA-WGSVECVRLLLEAGADRNVRQEDQQVPLHCA 634          
BLAST of mRNA_M-pyrifera_M_contig113842.2869.1 vs. uniprot
Match: A0A8H6CP09_9LECA (Uncharacterized protein n=3 Tax=Letharia TaxID=112415 RepID=A0A8H6CP09_9LECA)

HSP 1 Score: 50.1 bits (118), Expect = 2.820e-5
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   58 RRKTINATNHFGASPLHWAAVWDSVDCMRLLIEAGANVHAKQHNNQTALHSA 213
            +R  IN  N +  +PLH AA W SV+C+RLL+EAGA+ + +Q + Q  LH A
Sbjct:  587 QRLNINQANRWAETPLHVAA-WGSVECVRLLLEAGADRNVRQEDQQVPLHCA 637          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113842.2869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A8J8WMU9_9EURO2.110e-737.50Uncharacterized protein n=1 Tax=Penicillium sp. RF... [more]
S8A178_PENO14.060e-737.50Uncharacterized protein n=1 Tax=Penicillium oxalic... [more]
A0A0F7TYA7_PENBI1.470e-637.50Uncharacterized protein n=3 Tax=Penicillium TaxID=... [more]
A0A1L9WUH5_ASPA11.930e-641.67Uncharacterized protein n=7 Tax=Aspergillus TaxID=... [more]
A0A2G6QMV3_9SPIR4.320e-645.61Uncharacterized protein n=1 Tax=Treponema sp. TaxI... [more]
T1EI80_HELRO9.460e-631.34Uncharacterized protein n=1 Tax=Helobdella robusta... [more]
A0A7I7WGN9_9MYCO1.100e-543.33Uncharacterized protein n=1 Tax=Mycobacterium bran... [more]
A0A1V6TC25_9EURO1.480e-536.49Uncharacterized protein n=1 Tax=Penicillium stecki... [more]
A0A8H3FXA1_9LECA2.820e-548.08Uncharacterized protein n=1 Tax=Imshaugia aleurite... [more]
A0A8H6CP09_9LECA2.820e-548.08Uncharacterized protein n=3 Tax=Letharia TaxID=112... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113842contigM-pyrifera_M_contig113842:46..267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815652.6340444-CDS-M-pyrifera_M_contig113842:45..2671622815652.6340444-CDS-M-pyrifera_M_contig113842:45..267Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113842 46..267 +
1692277506.0276117-CDS-M-pyrifera_M_contig113842:45..2671692277506.0276117-CDS-M-pyrifera_M_contig113842:45..267Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113842 46..267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113842.2869.1prot_M-pyrifera_M_contig113842.2869.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113842 46..267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113842.2869.1

>prot_M-pyrifera_M_contig113842.2869.1 ID=prot_M-pyrifera_M_contig113842.2869.1|Name=mRNA_M-pyrifera_M_contig113842.2869.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
HVDCLQELLKKAATISVLQRRKTINATNHFGASPLHWAAVWDSVDCMRLL
IEAGANVHAKQHNNQTALHSAAKA
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mRNA from alignment at M-pyrifera_M_contig113842:46..267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113842.2869.1 ID=mRNA_M-pyrifera_M_contig113842.2869.1|Name=mRNA_M-pyrifera_M_contig113842.2869.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig113842:46..267+ (Macrocystis pyrifera P11B4 male)
CACGTGGACTGCCTCCAAGAGCTGCTCAAGAAGGCGGCGACGATCTCGGT GCTGCAGCGGCGGAAGACCATCAACGCCACGAACCACTTCGGAGCCTCGC CCCTCCACTGGGCAGCCGTCTGGGACTCGGTCGACTGCATGCGCCTCCTC ATCGAGGCAGGCGCCAACGTGCACGCCAAGCAGCACAACAACCAGACCGC CCTCCACTCCGCCGCCAAGGCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113842:46..267+

>mRNA_M-pyrifera_M_contig113842.2869.1 ID=mRNA_M-pyrifera_M_contig113842.2869.1|Name=mRNA_M-pyrifera_M_contig113842.2869.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig113842:46..267+ (Macrocystis pyrifera P11B4 male)
CACGTGGACTGCCTCCAAGAGCTGCTCAAGAAGGCGGCGACGATCTCGGT
GCTGCAGCGGCGGAAGACCATCAACGCCACGAACCACTTCGGAGCCTCGC
CCCTCCACTGGGCAGCCGTCTGGGACTCGGTCGACTGCATGCGCCTCCTC
ATCGAGGCAGGCGCCAACGTGCACGCCAAGCAGCACAACAACCAGACCGC
CCTCCACTCCGCCGCCAAGGCTCACGTGGACTGCCTCCAAGAGCTGCTCA
AGAAGGCGGCGACGATCTCGGTGCTGCAGCGGCGGAAGACCATCAACGCC
ACGAACCACTTCGGAGCCTCGCCCCTCCACTGGGCAGCCGTCTGGGACTC
GGTCGACTGCATGCGCCTCCTCATCGAGGCAGGCGCCAACGTGCACGCCA
AGCAGCACAACAACCAGACCGCCCTCCACTCCGCCGCCAAGGCT
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