mRNA_M-pyrifera_M_contig113727.2857.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113727.2857.1
Unique NamemRNA_M-pyrifera_M_contig113727.2857.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113727.2857.1 vs. uniprot
Match: A0A2E7KK08_9PLAN (Uncharacterized protein n=12 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KK08_9PLAN)

HSP 1 Score: 202 bits (514), Expect = 1.910e-58
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1
Query:    1 SKPVDFEKEIYPLLKSRCFNCHAGMNPDSGYRLDVHEELLGFSTGETLIVPGDSEQSKLIELVSTQVAETRMPPVDAGAALKKEEIAKLRAWIDQGAKW 297
            SKPV+FEKEIYPLLKSRCFNCHAG NPDSGYRLDVHEELLGFSTGETLIVPGDSEQSKLIELVSTQVAETRMPPVDAGAALKKEEIAKLRAWIDQGAKW
Sbjct:  295 SKPVNFEKEIYPLLKSRCFNCHAGTNPDSGYRLDVHEELLGFSTGETLIVPGDSEQSKLIELVSTQVAETRMPPVDAGAALKKEEIAKLRAWIDQGAKW 393          
BLAST of mRNA_M-pyrifera_M_contig113727.2857.1 vs. uniprot
Match: A0A518I9A8_9PLAN (Planctomycete cytochrome C n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I9A8_9PLAN)

HSP 1 Score: 179 bits (453), Expect = 3.980e-50
Identity = 83/99 (83.84%), Postives = 93/99 (93.94%), Query Frame = 1
Query:    1 SKPVDFEKEIYPLLKSRCFNCHAGMNPDSGYRLDVHEELLGFSTGETLIVPGDSEQSKLIELVSTQVAETRMPPVDAGAALKKEEIAKLRAWIDQGAKW 297
            ++PV FEKEIYPLLK++CF+CHAG NPDSGYRLDV+EELLGFSTGE LIVPG+SEQSKL+ELVSTQVAE RMPPVDAG AL ++EIAKLRAWIDQGAKW
Sbjct:  296 AEPVHFEKEIYPLLKAKCFSCHAGANPDSGYRLDVYEELLGFSTGEELIVPGNSEQSKLVELVSTQVAEERMPPVDAGTALMEQEIAKLRAWIDQGAKW 394          
BLAST of mRNA_M-pyrifera_M_contig113727.2857.1 vs. uniprot
Match: A0A517VBD5_9PLAN (Planctomycete cytochrome C n=7 Tax=Gimesia TaxID=1649453 RepID=A0A517VBD5_9PLAN)

HSP 1 Score: 164 bits (416), Expect = 4.050e-45
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 1
Query:    4 KPVDFEKEIYPLLKSRCFNCHAGMNPDSGYRLDVHEELLGFSTGETLIVPGDSEQSKLIELVSTQVAETRMPPVDAGAALKKEEIAKLRAWIDQGAKW 297
            KPV F+ EI PLLK +CF+CHAG NPDSGYRLDV++ELLGFSTGE LIVPG+S QSKLIELVS+QVAETRMPP D+ +AL K+EIA LRAWIDQGAKW
Sbjct:  298 KPVHFKDEIVPLLKQKCFSCHAGTNPDSGYRLDVYDELLGFSTGEKLIVPGESGQSKLIELVSSQVAETRMPPADSASALSKKEIALLRAWIDQGAKW 395          
BLAST of mRNA_M-pyrifera_M_contig113727.2857.1 vs. uniprot
Match: A0A2E2C1F9_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C1F9_9PLAN)

HSP 1 Score: 163 bits (412), Expect = 1.400e-44
Identity = 76/98 (77.55%), Postives = 86/98 (87.76%), Query Frame = 1
Query:    4 KPVDFEKEIYPLLKSRCFNCHAGMNPDSGYRLDVHEELLGFSTGETLIVPGDSEQSKLIELVSTQVAETRMPPVDAGAALKKEEIAKLRAWIDQGAKW 297
            KPV F+ EI PLLK  CF+CHAG NPDSGYRLDV++ELLGFSTGE LIVPG+S+QSKLIELVS+Q+AE RMPP D+ AAL K+EIA LRAWIDQGAKW
Sbjct:  298 KPVHFKDEIVPLLKQNCFHCHAGTNPDSGYRLDVYDELLGFSTGEKLIVPGESKQSKLIELVSSQIAEERMPPADSAAALTKKEIALLRAWIDQGAKW 395          
BLAST of mRNA_M-pyrifera_M_contig113727.2857.1 vs. uniprot
Match: A0A517WXG1_9PLAN (Planctomycete cytochrome C n=3 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WXG1_9PLAN)

HSP 1 Score: 159 bits (401), Expect = 4.290e-43
Identity = 74/96 (77.08%), Postives = 84/96 (87.50%), Query Frame = 1
Query:   10 VDFEKEIYPLLKSRCFNCHAGMNPDSGYRLDVHEELLGFSTGETLIVPGDSEQSKLIELVSTQVAETRMPPVDAGAALKKEEIAKLRAWIDQGAKW 297
            VDF KEIYPLLK RCF+CHAG NPDSGYRLDV++ELLGFSTGE LIVPG+S QSKLI+LVS++VAE RMPPVD+   L ++EIA L AWIDQGAKW
Sbjct:  299 VDFRKEIYPLLKQRCFSCHAGTNPDSGYRLDVYDELLGFSTGEELIVPGESAQSKLIQLVSSKVAEERMPPVDSTQPLSEQEIALLSAWIDQGAKW 394          
BLAST of mRNA_M-pyrifera_M_contig113727.2857.1 vs. uniprot
Match: A0A3B1DQC4_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1DQC4_9ZZZZ)

HSP 1 Score: 138 bits (347), Expect = 8.270e-36
Identity = 66/99 (66.67%), Postives = 75/99 (75.76%), Query Frame = 1
Query:    1 SKPVDFEKEIYPLLKSRCFNCHAGMNPDSGYRLDVHEELLGFSTGETLIVPGDSEQSKLIELVSTQVAETRMPPVDAGAALKKEEIAKLRAWIDQGAKW 297
            +K V+F+K++YPLLK RCF CH+G NPDSGYRLDV EEL G S GE LIV G S QS+LIELV+T  AE  MPP D G  L K+EIA LRAWIDQG  W
Sbjct:  276 AKKVNFKKDVYPLLKKRCFECHSGSNPDSGYRLDVLEELYGESNGEPLIVLGKSNQSRLIELVNTSNAEEIMPPTDEGKRLTKKEIALLRAWIDQGVNW 374          
BLAST of mRNA_M-pyrifera_M_contig113727.2857.1 vs. uniprot
Match: A0A1P8WNS6_9PLAN (Planctomycete cytochrome C n=2 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WNS6_9PLAN)

HSP 1 Score: 132 bits (333), Expect = 6.410e-34
Identity = 60/98 (61.22%), Postives = 75/98 (76.53%), Query Frame = 1
Query:    4 KPVDFEKEIYPLLKSRCFNCHAGMNPDSGYRLDVHEELLGFSTGETLIVPGDSEQSKLIELVSTQVAETRMPPVDAGAALKKEEIAKLRAWIDQGAKW 297
            KPVDF++++YP+LKSRCF+CHAG  PDSGYRLDV+ ELLG+STGE L  PG S  S+L+E+V+    E RMPP D    L  ++IA L+AWIDQG KW
Sbjct:  332 KPVDFKRDVYPVLKSRCFDCHAGDKPDSGYRLDVYRELLGYSTGEVLAEPGGSRHSRLLEVVAADSEEDRMPP-DGDDPLTDQQIAMLKAWIDQGMKW 428          
BLAST of mRNA_M-pyrifera_M_contig113727.2857.1 vs. uniprot
Match: F0SIN8_RUBBR (Uncharacterized protein n=2 Tax=Rubinisphaera TaxID=1649490 RepID=F0SIN8_RUBBR)

HSP 1 Score: 132 bits (332), Expect = 8.740e-34
Identity = 61/99 (61.62%), Postives = 79/99 (79.80%), Query Frame = 1
Query:    1 SKPVDFEKEIYPLLKSRCFNCHAGMNPDSGYRLDVHEELLGFSTGETLIVPGDSEQSKLIELVSTQVAETRMPPVDAGAALKKEEIAKLRAWIDQGAKW 297
            +KPV+F K+I+P+L+ RCF CHA   PDSGYRLDV +ELLG+STGE L+VPG S +SKLI++++T  A  RMPP +    L++EEIAKLRAWIDQG +W
Sbjct:  300 NKPVNFRKDIFPILEERCFGCHAEEFPDSGYRLDVRDELLGYSTGEPLVVPGSSRRSKLIDVLTTSNASERMPPGEP--PLEEEEIAKLRAWIDQGFEW 396          
BLAST of mRNA_M-pyrifera_M_contig113727.2857.1 vs. uniprot
Match: A0A517M0R5_9BACT (Planctomycete cytochrome C n=3 Tax=Rosistilla TaxID=2795779 RepID=A0A517M0R5_9BACT)

HSP 1 Score: 124 bits (310), Expect = 8.120e-31
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 1
Query:    4 KPVDFEKEIYPLLKSRCFNCHAGMNPDSGYRLDVHEELLGFSTGETLIVPGDSEQSKLIELVSTQVAETRMPPVDAGAALKKEEIAKLRAWIDQGAKW 297
            +P+DF  +IYP+L+ RCF+CH+G  PDSGYRLDV  ELLGFSTG    VPG S +S L+E+++T+    RMPP +    L + E+AK+RAWIDQG KW
Sbjct:  297 QPIDFTHDIYPILRDRCFDCHSGDYPDSGYRLDVRNELLGFSTGHVFAVPGQSRKSHLVEVLTTKSDSQRMPPEEE--PLSEIEVAKIRAWIDQGLKW 392          
BLAST of mRNA_M-pyrifera_M_contig113727.2857.1 vs. uniprot
Match: A0A2E0QS82_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0QS82_9BACT)

HSP 1 Score: 121 bits (304), Expect = 5.240e-30
Identity = 54/97 (55.67%), Postives = 70/97 (72.16%), Query Frame = 1
Query:   10 VDFEKEIYPLLKSRCFNCHAGMNPDSGYRLDVHEELLGFSTGETLIVPGDSEQSKLIELVSTQVAETRMPPV-DAGAALKKEEIAKLRAWIDQGAKW 297
            VDF  ++YPLLKSRCF CH+G NPDSG+RLDV  E+LG+STG+ L  PG +  S+L+E ++    E RMPPV D GAAL + E+  L AWI++G  W
Sbjct:  277 VDFSHDVYPLLKSRCFKCHSGTNPDSGHRLDVRNEILGYSTGDPLAEPGKARSSRLLEKITESNPEDRMPPVEDGGAALTEREVGLLAAWIERGMMW 373          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113727.2857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KK08_9PLAN1.910e-5897.98Uncharacterized protein n=12 Tax=Gimesia TaxID=164... [more]
A0A518I9A8_9PLAN3.980e-5083.84Planctomycete cytochrome C n=2 Tax=Gimesia TaxID=1... [more]
A0A517VBD5_9PLAN4.050e-4578.57Planctomycete cytochrome C n=7 Tax=Gimesia TaxID=1... [more]
A0A2E2C1F9_9PLAN1.400e-4477.55Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A517WXG1_9PLAN4.290e-4377.08Planctomycete cytochrome C n=3 Tax=Gimesia aquarii... [more]
A0A3B1DQC4_9ZZZZ8.270e-3666.67Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A1P8WNS6_9PLAN6.410e-3461.22Planctomycete cytochrome C n=2 Tax=Fuerstiella mar... [more]
F0SIN8_RUBBR8.740e-3461.62Uncharacterized protein n=2 Tax=Rubinisphaera TaxI... [more]
A0A517M0R5_9BACT8.120e-3156.12Planctomycete cytochrome C n=3 Tax=Rosistilla TaxI... [more]
A0A2E0QS82_9BACT5.240e-3055.67Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113727contigM-pyrifera_M_contig113727:249..545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score161.4
Seed ortholog evalue2.2e-37
Seed eggNOG ortholog344747.PM8797T_15978
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cytochrome c
EggNOG OGsCOG2010@1,COG2010@2
COG Functional cat.C
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815651.9818025-CDS-M-pyrifera_M_contig113727:248..5451622815651.9818025-CDS-M-pyrifera_M_contig113727:248..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113727 249..545 +
1692277505.7390404-CDS-M-pyrifera_M_contig113727:248..5451692277505.7390404-CDS-M-pyrifera_M_contig113727:248..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113727 249..545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113727.2857.1prot_M-pyrifera_M_contig113727.2857.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113727 249..545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113727.2857.1

>prot_M-pyrifera_M_contig113727.2857.1 ID=prot_M-pyrifera_M_contig113727.2857.1|Name=mRNA_M-pyrifera_M_contig113727.2857.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
SKPVDFEKEIYPLLKSRCFNCHAGMNPDSGYRLDVHEELLGFSTGETLIV
PGDSEQSKLIELVSTQVAETRMPPVDAGAALKKEEIAKLRAWIDQGAKW
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mRNA from alignment at M-pyrifera_M_contig113727:249..545+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113727.2857.1 ID=mRNA_M-pyrifera_M_contig113727.2857.1|Name=mRNA_M-pyrifera_M_contig113727.2857.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig113727:249..545+ (Macrocystis pyrifera P11B4 male)
TCGAAGCCGGTGGATTTTGAAAAAGAGATCTACCCGCTGCTCAAGTCGCG GTGTTTCAACTGTCATGCGGGAATGAATCCGGATTCCGGGTATCGGCTGG ATGTGCATGAGGAACTGCTGGGCTTCAGTACGGGAGAGACGCTGATTGTG CCGGGGGACAGCGAACAGAGCAAGCTGATCGAACTGGTCTCCACACAGGT GGCGGAAACGCGGATGCCTCCCGTCGATGCGGGCGCGGCTTTGAAGAAAG AAGAGATTGCGAAGCTGCGGGCGTGGATCGACCAGGGGGCGAAGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113727:249..545+

>mRNA_M-pyrifera_M_contig113727.2857.1 ID=mRNA_M-pyrifera_M_contig113727.2857.1|Name=mRNA_M-pyrifera_M_contig113727.2857.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig113727:249..545+ (Macrocystis pyrifera P11B4 male)
TCGAAGCCGGTGGATTTTGAAAAAGAGATCTACCCGCTGCTCAAGTCGCG
GTGTTTCAACTGTCATGCGGGAATGAATCCGGATTCCGGGTATCGGCTGG
ATGTGCATGAGGAACTGCTGGGCTTCAGTACGGGAGAGACGCTGATTGTG
CCGGGGGACAGCGAACAGAGCAAGCTGATCGAACTGGTCTCCACACAGGT
GGCGGAAACGCGGATGCCTCCCGTCGATGCGGGCGCGGCTTTGAAGAAAG
AAGAGATTGCGAAGCTGCGGGCGTGGATCGACCAGGGGGCGAAGTGGTCG
AAGCCGGTGGATTTTGAAAAAGAGATCTACCCGCTGCTCAAGTCGCGGTG
TTTCAACTGTCATGCGGGAATGAATCCGGATTCCGGGTATCGGCTGGATG
TGCATGAGGAACTGCTGGGCTTCAGTACGGGAGAGACGCTGATTGTGCCG
GGGGACAGCGAACAGAGCAAGCTGATCGAACTGGTCTCCACACAGGTGGC
GGAAACGCGGATGCCTCCCGTCGATGCGGGCGCGGCTTTGAAGAAAGAAG
AGATTGCGAAGCTGCGGGCGTGGATCGACCAGGGGGCGAAGTGG
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