mRNA_M-pyrifera_M_contig113701.2851.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113701.2851.1
Unique NamemRNA_M-pyrifera_M_contig113701.2851.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113701.2851.1 vs. uniprot
Match: A0A2R5GQQ7_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQQ7_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.710e-28
Identity = 66/156 (42.31%), Postives = 86/156 (55.13%), Query Frame = 1
Query:    4 GMNGRVVLALRDDIAPRAVANFRELLSSGK----LIGSPIHRVSAGGWIQGGDIVDGSGAHSEAALPREGSKFVEDESFDLPH-HTGTLSYANNGV-HTNGSQYVLSVRPCPWLQGTRVAFGSVVFGLSFLRYLSNRPTENERPLATVTLANGGDF 453
            G   RVV+ L DDI P    NF  L           GS  HRV  GGW+QGGD+VDGSG HS AA+ + G     DE+F + H   G +S A+ G  HTNGSQ+ +++ P  WL   RVAFG VV+G+     +   P +NERP+    + + G F
Sbjct:  170 GSRHRVVIELYDDICPNTCDNFVLLCQENNDAQGYKGSSFHRVVEGGWVQGGDVVDGSGKHSVAAIDKSGR--FPDETFAIKHDRAGVVSMASEGKPHTNGSQFFVTLAPLKWLDCKRVAFGRVVYGMDAFFAIEGMPRKNERPMGRCEITSCGIF 323          
BLAST of mRNA_M-pyrifera_M_contig113701.2851.1 vs. uniprot
Match: A0A0L0DPU2_THETB (PPIase cyclophilin-type domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DPU2_THETB)

HSP 1 Score: 117 bits (292), Expect = 1.180e-27
Identity = 70/156 (44.87%), Postives = 92/156 (58.97%), Query Frame = 1
Query:    1 DGMNGRVVLALRDDIAPRAVANFRELLSSG----KLIGSPIHRVSAGGWIQGGDIVDGSGAHSEAALPREGSKFVEDESFDLPHH-TGTLSYANNGVHTNGSQYVLSVRPCPWLQGTRVAFGSVVFGLSFLRYLSNRPTENERPLATVTLANGGDF 453
            DG   R+V  L DD+AP++ ANFR L +S       IGS IHRV  GGWIQGGDI  GS     A++   G  F EDE+F L H   G L YAN+G HTN SQ+ ++++P P      VAFG +V G+  +  + N    N+RP+  VT+  GG+F
Sbjct:  428 DGEIVRLVFELYDDVAPKSAANFRSLCASDVDGLSYIGSVIHRVVPGGWIQGGDISPGSPGSGGASV--FGEPF-EDENFALKHDKVGMLGYANDGPHTNASQFYITLQPMPAFDEQYVAFGRLVDGIEAVEAIVNLAAINQRPVRAVTVVAGGEF 580          
BLAST of mRNA_M-pyrifera_M_contig113701.2851.1 vs. uniprot
Match: A0A1V9ZND0_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZND0_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.290e-27
Identity = 58/146 (39.73%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   19 VVLALRDDIAPRAVANFRELLSSGKLIGSPIHRVSAGGWIQGGDIVDGSGAHSEAALPREGSKFVEDESFDLPH-HTGTLSYANNGVHTNGSQYVLSVRPCPWLQGTRVAFGSVVFGLSFLRYLSNRPTENERPLATVTLANGGDF 453
            +VL L  D  P+A  NF +L ++G   G P+HRV  GGWIQ GD+        +      G    EDE+F + H   G LS AN+G HTNG+Q+ +++ P PWL   +VAFG VV G+  ++ +   PT NERP+    +A  G+ 
Sbjct:  151 IVLELYQDACPKACENFTKLCAAG-YAGLPVHRVVEGGWIQSGDVERDGRGDGKGGCVVNGEGVFEDETFCISHDQAGILSMANDGPHTNGAQFFITLAPLPWLDKNKVAFGRVVAGMKTVQAIGRLPTVNERPITPCVIAECGEI 295          
BLAST of mRNA_M-pyrifera_M_contig113701.2851.1 vs. uniprot
Match: W4G944_9STRA (Peptidyl-prolyl cis-trans isomerase n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G944_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.390e-27
Identity = 62/150 (41.33%), Postives = 81/150 (54.00%), Query Frame = 1
Query:   16 RVVLALRDDIAPRAVANFRELL---SSGKLIGSPIHRVSAGGWIQGGDIVDGSGAHSEAALPREGSKFVEDESFDLPHHT-GTLSYANNGVHTNGSQYVLSVRPCPWLQGTRVAFGSVVFGLSFLRYLSNRPTENERPLATVTLANGGDF 453
            RV+L L DDI P+A  NF  L    +     G PIHR+  GGWIQGGD+  G                 EDE+F + H   G LS ANNG HTNG+Q+ +++ P PWL  ++VAFG VV G+  +  +   PT  ERP  T ++A  G  
Sbjct:  151 RVILELFDDICPKACENFAALCRPETQSGYAGLPIHRIVPGGWIQGGDVATGGRGDGVGGSMLHEDGVFEDEAFSVSHDKPGILSMANNGPHTNGAQFFITLAPLPWLDKSKVAFGRVVSGMKTIDAIGKLPTLFERPTLTCSIAACGQL 300          
BLAST of mRNA_M-pyrifera_M_contig113701.2851.1 vs. uniprot
Match: A0A7S2V0W8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0W8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.970e-27
Identity = 63/151 (41.72%), Postives = 86/151 (56.95%), Query Frame = 1
Query:   16 RVVLALRDDIAPRAVANFRELLSSGKLI----GSPIHRVSAGGWIQGGDIVDGSGAHSEAALPREGSKFVEDESFDLPHHT-GTLSYANNGVHTNGSQYVLSVRPCPWLQGTRVAFGSVVFGLSFLRYLSNRPTENERPLATVTLANGGDF 453
            RV   L  DI P+   NFR L    + +    GSP HRV  GGW+QGGDI+ GSG   +  +   G  F  DE+F +  +T G L+ AN G HTNGSQ+ +++ P PWL    VAFG V  G+  +R ++N  TEN+RP    T+ + G+ 
Sbjct:  154 RVEFQLFSDICPKTCENFRVLCEGNRQMLQYKGSPFHRVVKGGWVQGGDIISGSG---DGGISIYGETFP-DETFAVEFNTEGILAMANAGPHTNGSQFFITLGPLPWLNNRAVAFGRVARGMEIIRGMNNMETENQRPKMDCTVVDCGEI 300          
BLAST of mRNA_M-pyrifera_M_contig113701.2851.1 vs. uniprot
Match: A0A7S1WY57_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WY57_ALECA)

HSP 1 Score: 112 bits (280), Expect = 4.120e-27
Identity = 61/136 (44.85%), Postives = 80/136 (58.82%), Query Frame = 1
Query:   25 LALRDDIAPRAVANFRELLSSGKLIGSPIHRVSAGGWIQGGDIVDGSGAHSEAALPREGSKFVEDESFDLPH-HTGTLSYANNGVHTNGSQYVLSVRPCPWLQGTRVAFGSVVFGLSFLRYLSNRPTENERPLATV 429
            L L D+  P    NF +LL+     G P+HRV AG W+Q GD+VDGSG HSEAA    G  ++  ESF + H   G L  AN+G  TNGSQ+ +++R  P+L G  V FG V+ G+  +  +S   T NERPL  V
Sbjct:  165 LELFDEECPVLSRNFLDLLALPSFKGHPVHRVKAGSWVQAGDLVDGSGLHSEAA----GGGYLRHESFSIKHDRPGLLGMANHGKDTNGSQFYITLREMPFLDGRSVVFGRVISGMRTILKVSRMKTRNERPLEDV 296          
BLAST of mRNA_M-pyrifera_M_contig113701.2851.1 vs. uniprot
Match: A0A024ULJ8_9STRA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024ULJ8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 8.200e-27
Identity = 63/152 (41.45%), Postives = 86/152 (56.58%), Query Frame = 1
Query:   16 RVVLALRDDIAPRAVANFRELL---SSGKLIGSPIHRVSAGGWIQGGDIVDGSGAHSE--AALPREGSKFVEDESFDLPHH-TGTLSYANNGVHTNGSQYVLSVRPCPWLQGTRVAFGSVVFGLSFLRYLSNRPTENERPLATVTLANGGDF 453
            RV++ L DD+ P+A  NF  L    +     G PIHR+  GGWIQGGD+V G        +AL  EG    EDE+F + H   G LS ANNG HTNG+Q+ +++ P PWL  ++V FG VV G+  +  +    T  ERP+ T ++A  G  
Sbjct:  155 RVIVELFDDVCPKACENFAALCRPETQHGYAGLPIHRIVPGGWIQGGDVVTGGRGDGVGGSALNEEG--VFEDEAFSVSHDKAGILSMANNGPHTNGAQFFITLAPLPWLDKSKVVFGRVVSGMKTIEAIGKLETVYERPVLTCSIAACGQL 304          
BLAST of mRNA_M-pyrifera_M_contig113701.2851.1 vs. uniprot
Match: A0A485LEX3_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LEX3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.680e-26
Identity = 61/151 (40.40%), Postives = 86/151 (56.95%), Query Frame = 1
Query:   16 RVVLALRDDIAPRAVANFRELL---SSGKLIGSPIHRVSAGGWIQGGDI-VDGSGAHSEAALPREGSKFVEDESFDLPHH-TGTLSYANNGVHTNGSQYVLSVRPCPWLQGTRVAFGSVVFGLSFLRYLSNRPTENERPLATVTLANGGDF 453
            RV++ L  D+ P+A  NF  L    +     G PIHR+  GGWIQGGD+   G G  +  ++  E   F EDE+F + H   G LS AN+G HTNG+Q+ +++ P PWL  T+VAFG VV G+  +  ++   T  ERP  T ++A  G  
Sbjct:  146 RVIVELYQDVCPKACENFATLCRPETQNGYAGLPIHRIVPGGWIQGGDVETGGRGDGARGSVLHEDGVF-EDEAFSISHDKAGILSMANDGPHTNGAQFFITLAPLPWLDKTKVAFGRVVSGMKTIEAIAKLKTVYERPAVTCSIAACGQL 295          
BLAST of mRNA_M-pyrifera_M_contig113701.2851.1 vs. uniprot
Match: A0A7S3MD06_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MD06_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.050e-25
Identity = 63/155 (40.65%), Postives = 90/155 (58.06%), Query Frame = 1
Query:   13 GRVVLALRDDIAPRAVANFREL---LSSGKLI----GSPIHRVSAGGWIQGGDIVDGSGAHSEAALPREGSKFVEDESFDLPHHT---GTLSYANNGVHTNGSQYVLSVRPCPWLQGTRVAFGSVVFGLSFLRYLSNRPTENERPLATVTLANGG 447
            G + + L +++ P+AV NF +L   + SG       G PIHR+   GWIQ GD+VDGSGAHS AAL + G   V DESF L       G + +AN G H++GSQ+ +++ PC W+    V  G V+ G   LR L+   T N+RP+  +T+ + G
Sbjct:  104 GVMQIELFNELCPQAVENFTKLCMGMGSGANAVHYKGCPIHRLVKDGWIQCGDMVDGSGAHSTAALDQTG--VVPDESFTLDFGFIPGGVVGFANEGAHSSGSQFFITMGPCEWMNHNFVGVGRVLQGFHVLRALNQLATTNQRPIKNITILSCG 256          
BLAST of mRNA_M-pyrifera_M_contig113701.2851.1 vs. uniprot
Match: A0A024TP67_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TP67_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.410e-25
Identity = 55/145 (37.93%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   16 RVVLALRDDIAPRAVANFRELLSSGKLIGSPIHRVSAGGWIQGGDIVDGSGAHSEAALPREGSKFVEDESFDLPH-HTGTLSYANNGVHTNGSQYVLSVRPCPWLQGTRVAFGSVVFGLSFLRYLSNRPTENERPLATVTLANGG 447
            +VV+ L  DI P+  +NF EL+ SGK   +P H V    ++ GGDI  G+G   +  +   G+++ +DE+F L +   G +  AN+GV+TNGSQ+ ++ +P P L G  VAFG VV GL  +R + N  +   +PL  V + + G
Sbjct:   70 KVVIELASDIVPKTASNFLELVKSGKYKNTPFHLVQKNNYVSGGDITHGNG---QGGMTASGARYFDDENFALRYTEPGVVGMANSGVNTNGSQFFITSKPMPHLNGRNVAFGKVVDGLDVVRKIENVYSVKGKPLTEVVVVDCG 211          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113701.2851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R5GQQ7_9STRA4.710e-2842.31Peptidyl-prolyl cis-trans isomerase n=1 Tax=Hondae... [more]
A0A0L0DPU2_THETB1.180e-2744.87PPIase cyclophilin-type domain-containing protein ... [more]
A0A1V9ZND0_9STRA1.290e-2739.73Peptidyl-prolyl cis-trans isomerase n=1 Tax=Achlya... [more]
W4G944_9STRA1.390e-2741.33Peptidyl-prolyl cis-trans isomerase n=6 Tax=Aphano... [more]
A0A7S2V0W8_9STRA2.970e-2741.72Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1WY57_ALECA4.120e-2744.85Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A024ULJ8_9STRA8.200e-2741.45PPIase cyclophilin-type domain-containing protein ... [more]
A0A485LEX3_9STRA2.680e-2640.40Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aphano... [more]
A0A7S3MD06_9STRA1.050e-2540.65Peptidyl-prolyl cis-trans isomerase n=1 Tax=Spumel... [more]
A0A024TP67_9STRA1.410e-2537.93Peptidyl-prolyl cis-trans isomerase n=2 Tax=Aphano... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113701contigM-pyrifera_M_contig113701:56..508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue5.4e-24
Seed eggNOG ortholog529818.AMSG_12283T0
KEGG koko:K12739
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Exons1
Model size453
Cds size447
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815651.6378608-CDS-M-pyrifera_M_contig113701:55..5021622815651.6378608-CDS-M-pyrifera_M_contig113701:55..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113701 56..502 -
1692277505.6194751-CDS-M-pyrifera_M_contig113701:55..5021692277505.6194751-CDS-M-pyrifera_M_contig113701:55..502Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113701 56..502 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815651.658218-UTR-M-pyrifera_M_contig113701:502..5081622815651.658218-UTR-M-pyrifera_M_contig113701:502..508Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113701 503..508 -
1692277505.6339674-UTR-M-pyrifera_M_contig113701:502..5081692277505.6339674-UTR-M-pyrifera_M_contig113701:502..508Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113701 503..508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113701.2851.1prot_M-pyrifera_M_contig113701.2851.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113701 56..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113701.2851.1

>prot_M-pyrifera_M_contig113701.2851.1 ID=prot_M-pyrifera_M_contig113701.2851.1|Name=mRNA_M-pyrifera_M_contig113701.2851.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
MNGRVVLALRDDIAPRAVANFRELLSSGKLIGSPIHRVSAGGWIQGGDIV
DGSGAHSEAALPREGSKFVEDESFDLPHHTGTLSYANNGVHTNGSQYVLS
VRPCPWLQGTRVAFGSVVFGLSFLRYLSNRPTENERPLATVTLANGGDF
back to top

mRNA from alignment at M-pyrifera_M_contig113701:56..508-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113701.2851.1 ID=mRNA_M-pyrifera_M_contig113701.2851.1|Name=mRNA_M-pyrifera_M_contig113701.2851.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig113701:56..508- (Macrocystis pyrifera P11B4 male)
GATGGAATGAATGGCCGCGTGGTTTTGGCGCTCCGAGATGATATTGCTCC TCGTGCAGTTGCCAACTTTCGTGAACTGCTCTCAAGTGGCAAGTTGATTG GTAGCCCGATCCATCGTGTATCTGCAGGCGGCTGGATTCAAGGTGGAGAC ATTGTAGATGGGAGCGGCGCTCATTCAGAAGCTGCATTGCCACGGGAAGG GAGTAAATTTGTGGAAGATGAGTCATTTGACTTGCCACACCACACCGGAA CCCTCAGCTATGCAAACAATGGTGTTCATACCAACGGATCTCAATATGTG CTTTCGGTTCGCCCTTGTCCATGGTTGCAAGGCACCCGTGTTGCCTTTGG TAGCGTCGTCTTTGGACTTTCTTTCCTTCGATACCTCTCAAACCGTCCAA CCGAAAATGAGAGACCATTAGCCACCGTCACCCTCGCCAATGGAGGGGAT TTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig113701:56..508-

>mRNA_M-pyrifera_M_contig113701.2851.1 ID=mRNA_M-pyrifera_M_contig113701.2851.1|Name=mRNA_M-pyrifera_M_contig113701.2851.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig113701:56..508- (Macrocystis pyrifera P11B4 male)
ATGAATGGCCGCGTGGTTTTGGCGCTCCGAGATGATATTGCTCCTCGTGC
AGTTGCCAACTTTCGTGAACTGCTCTCAAGTGGCAAGTTGATTGGTAGCC
CGATCCATCGTGTATCTGCAGGCGGCTGGATTCAAGGTGGAGACATTGTA
GATGGGAGCGGCGCTCATTCAGAAGCTGCATTGCCACGGGAAGGGAGTAA
ATTTGTGGAAGATGAGTCATTTGACTTGCCACACCACACCGGAACCCTCA
GCTATGCAAACAATGGTGTTCATACCAACGGATCTCAATATGTGCTTTCG
GTTCGCCCTTGTCCATGGTTGCAAGGCACCCGTGTTGCCTTTGGTAGCGT
CGTCTTTGGACTTTCTTTCCTTCGATACCTCTCAAACCGTCCAACCGAAA
ATGAGAGACCATTAGCCACCGTCACCCTCGCCAATGGAGGGGATTTTATG
AATGGCCGCGTGGTTTTGGCGCTCCGAGATGATATTGCTCCTCGTGCAGT
TGCCAACTTTCGTGAACTGCTCTCAAGTGGCAAGTTGATTGGTAGCCCGA
TCCATCGTGTATCTGCAGGCGGCTGGATTCAAGGTGGAGACATTGTAGAT
GGGAGCGGCGCTCATTCAGAAGCTGCATTGCCACGGGAAGGGAGTAAATT
TGTGGAAGATGAGTCATTTGACTTGCCACACCACACCGGAACCCTCAGCT
ATGCAAACAATGGTGTTCATACCAACGGATCTCAATATGTGCTTTCGGTT
CGCCCTTGTCCATGGTTGCAAGGCACCCGTGTTGCCTTTGGTAGCGTCGT
CTTTGGACTTTCTTTCCTTCGATACCTCTCAAACCGTCCAACCGAAAATG
AGAGACCATTAGCCACCGTCACCCTCGCCAATGGAGGGGATTTT
back to top