mRNA_M-pyrifera_M_contig11362.2842.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11362.2842.1
Unique NamemRNA_M-pyrifera_M_contig11362.2842.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11362.2842.1 vs. uniprot
Match: A0A6H5JQ34_9PHAE (Pterin-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ34_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.650e-16
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 LTGESDPGRRDWGTVGACCSAAERGAKIVRVHNVRGVAQALAVSDAIQGK 150
            LT ESDP +RDWGTVGACCSAAERG K+VRVHNV+G  QALAV+DAI+ +
Sbjct:  362 LTSESDPVQRDWGTVGACCSAAERGVKLVRVHNVKGAVQALAVADAIRNE 411
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BLAST of mRNA_M-pyrifera_M_contig11362.2842.1 vs. uniprot
Match: D8LRL2_ECTSI (Pterin-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL2_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.640e-16
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 LTGESDPGRRDWGTVGACCSAAERGAKIVRVHNVRGVAQALAVSDAIQGK 150
            LT ESDP +RDWGTVGACCSAAERGAK+VRVHNV+G   ALAVSDAI+ +
Sbjct:  530 LTSESDPIQRDWGTVGACCSAAERGAKLVRVHNVKGAVLALAVSDAIRNE 579
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BLAST of mRNA_M-pyrifera_M_contig11362.2842.1 vs. uniprot
Match: A0A835YYJ5_9STRA (Dihydropteroate synthase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYJ5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.560e-9
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   28 RDWGTVGACCSAAERGAKIVRVHNVRGVAQALAVSDAIQ 144
            RDWGT GA C+AAERGA+IVRVH+VRGV  AL V DA++
Sbjct:  498 RDWGTAGAACAAAERGARIVRVHHVRGVKHALRVVDAVR 536
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BLAST of mRNA_M-pyrifera_M_contig11362.2842.1 vs. uniprot
Match: UPI001F47BE4B (dihydropteroate synthase n=1 Tax=Acidiphilium iwatense TaxID=768198 RepID=UPI001F47BE4B)

HSP 1 Score: 50.4 bits (119), Expect = 7.010e-6
Identity = 26/43 (60.47%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:    1 LTGESDPGRRDWGTVGACCSAAERGAKIVRVHNVRGVAQALAV 129
            L GE+DP RRD G++ A   AA RGA I+RVH+V G AQAL V
Sbjct:  232 LAGEADPARRDAGSIAAALFAANRGAAILRVHDVAGTAQALLV 274
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BLAST of mRNA_M-pyrifera_M_contig11362.2842.1 vs. uniprot
Match: A0A1Y4DHN6_9ACTN (2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase n=4 Tax=Atopobiaceae TaxID=1643824 RepID=A0A1Y4DHN6_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 1.400e-5
Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 LTGESDPGRRDWGTVGACCSAAERGAKIVRVHNVRGVAQAL 123
            L GE+DP  RD  T G C SA E GA+I+RVHNV  VAQA+
Sbjct:  260 LGGEADPAARDAATAGVCISAIENGARILRVHNVAEVAQAV 300
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BLAST of mRNA_M-pyrifera_M_contig11362.2842.1 vs. uniprot
Match: J3P4R9_GAET3 (Folic acid synthesis protein n=1 Tax=Gaeumannomyces tritici (strain R3-111a-1) TaxID=644352 RepID=J3P4R9_GAET3)

HSP 1 Score: 49.3 bits (116), Expect = 1.910e-5
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 LTGESDPGRRDWGTVGACCSAAERGAKIVRVHNVRGVAQALAVSDAI 141
            +TG  +P  R WGT  A  +A   GA IVRVH+VR +AQ +A+SDAI
Sbjct:  432 VTGVREPAARTWGTAAAVAAAVHGGADIVRVHDVREMAQVVAMSDAI 478
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BLAST of mRNA_M-pyrifera_M_contig11362.2842.1 vs. uniprot
Match: A0A6L6HJ65_9GAMM (Dihydropteroate synthase n=1 Tax=Erwinia sp. CPCC 100877 TaxID=2665162 RepID=A0A6L6HJ65_9GAMM)

HSP 1 Score: 48.9 bits (115), Expect = 2.400e-5
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 LTGESDPGRRDWGTVGACCSAAERGAKIVRVHNVRGVAQALAV 129
            LT ESDP  RD+G+V A   AA+RG +IVRVHNV+G+  AL V
Sbjct:  217 LTNESDPLARDFGSVTASLYAADRGVEIVRVHNVKGMKDALKV 259
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BLAST of mRNA_M-pyrifera_M_contig11362.2842.1 vs. uniprot
Match: A0A4P7N866_MAGOR (Pterin-binding domain-containing protein n=6 Tax=Pyricularia TaxID=48558 RepID=A0A4P7N866_MAGOR)

HSP 1 Score: 48.9 bits (115), Expect = 2.620e-5
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 LTGESDPGRRDWGTVGACCSAAERGAKIVRVHNVRGVAQALAVSDAI 141
            +TG   P  R WGT  A  +A + GA +VRVH+VR +AQ +A+SDAI
Sbjct:  520 ITGVKKPANRVWGTAAAVAAAVQGGADVVRVHDVREMAQVVAMSDAI 566
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BLAST of mRNA_M-pyrifera_M_contig11362.2842.1 vs. uniprot
Match: A0A7V4X8S6_9BACT (Dihydropteroate synthase n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7V4X8S6_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 4.880e-5
Identity = 24/44 (54.55%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   10 ESDPGRRDWGTVGACCSAAERGAKIVRVHNVRGVAQALAVSDAI 141
            +++PG+R +GT+GA   AA+ GAKI+RVH+V+ V QAL V DA+
Sbjct:  353 KAEPGQRLFGTIGASILAAKNGAKIIRVHDVKEVKQALKVFDAL 396
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11362.2842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JQ34_9PHAE1.650e-1676.00Pterin-binding domain-containing protein n=1 Tax=E... [more]
D8LRL2_ECTSI2.640e-1678.00Pterin-binding domain-containing protein n=1 Tax=E... [more]
A0A835YYJ5_9STRA5.560e-971.79Dihydropteroate synthase-like protein n=1 Tax=Trib... [more]
UPI001F47BE4B7.010e-660.47dihydropteroate synthase n=1 Tax=Acidiphilium iwat... [more]
A0A1Y4DHN6_9ACTN1.400e-560.982-amino-4-hydroxy-6-hydroxymethyldihydropteridine ... [more]
J3P4R9_GAET31.910e-553.19Folic acid synthesis protein n=1 Tax=Gaeumannomyce... [more]
A0A6L6HJ65_9GAMM2.400e-560.47Dihydropteroate synthase n=1 Tax=Erwinia sp. CPCC ... [more]
A0A4P7N866_MAGOR2.620e-551.06Pterin-binding domain-containing protein n=6 Tax=P... [more]
A0A7V4X8S6_9BACT4.880e-554.55Dihydropteroate synthase n=1 Tax=Nitrospirae bacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11362contigM-pyrifera_M_contig11362:9323..9472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue2.5e-13
Seed eggNOG ortholog2880.D8LRL2
Preferred nameFOL1
KEGG rclassRC00002,RC00017,RC00121,RC00721,RC00842,RC00943
KEGG koko:K13939,ko:K13941
KEGG ReactionR03066,R03067,R03503,R03504
KEGG Pathwayko00790,ko01100,map00790,map01100
KEGG ModuleM00126,M00840
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0003848,GO:0004150,GO:0004156,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006082,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009396,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016772,GO:0016778,GO:0016829,GO:0016830,GO:0016832,GO:0018130,GO:0019438,GO:0019752,GO:0031967,GO:0031975,GO:0034641,GO:0042398,GO:0042558,GO:0042559,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0046653,GO:0046654,GO:0051186,GO:0051188,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity
EggNOG OGsCOG0294@1,KOG2544@2759
EC2.5.1.15,2.7.6.3,4.1.2.25
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815651.1489706-CDS-M-pyrifera_M_contig11362:9322..94721622815651.1489706-CDS-M-pyrifera_M_contig11362:9322..9472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11362 9323..9472 -
1692277505.3826416-CDS-M-pyrifera_M_contig11362:9322..94721692277505.3826416-CDS-M-pyrifera_M_contig11362:9322..9472Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11362 9323..9472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11362.2842.1prot_M-pyrifera_M_contig11362.2842.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11362 9323..9472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11362.2842.1

>prot_M-pyrifera_M_contig11362.2842.1 ID=prot_M-pyrifera_M_contig11362.2842.1|Name=mRNA_M-pyrifera_M_contig11362.2842.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
LTGESDPGRRDWGTVGACCSAAERGAKIVRVHNVRGVAQALAVSDAIQGK
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mRNA from alignment at M-pyrifera_M_contig11362:9323..9472-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11362.2842.1 ID=mRNA_M-pyrifera_M_contig11362.2842.1|Name=mRNA_M-pyrifera_M_contig11362.2842.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=150bp|location=Sequence derived from alignment at M-pyrifera_M_contig11362:9323..9472- (Macrocystis pyrifera P11B4 male)
TTGACAGGCGAATCGGACCCCGGTCGCAGAGATTGGGGGACAGTCGGAGC
TTGTTGCTCTGCGGCCGAGCGTGGGGCAAAGATCGTGAGGGTGCACAACG
TTAGGGGTGTGGCCCAGGCATTGGCTGTGTCCGATGCGATACAGGGGAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11362:9323..9472-

>mRNA_M-pyrifera_M_contig11362.2842.1 ID=mRNA_M-pyrifera_M_contig11362.2842.1|Name=mRNA_M-pyrifera_M_contig11362.2842.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig11362:9323..9472- (Macrocystis pyrifera P11B4 male)
TTGACAGGCGAATCGGACCCCGGTCGCAGAGATTGGGGGACAGTCGGAGC
TTGTTGCTCTGCGGCCGAGCGTGGGGCAAAGATCGTGAGGGTGCACAACG
TTAGGGGTGTGGCCCAGGCATTGGCTGTGTCCGATGCGATACAGGGGAAA
TTGACAGGCGAATCGGACCCCGGTCGCAGAGATTGGGGGACAGTCGGAGC
TTGTTGCTCTGCGGCCGAGCGTGGGGCAAAGATCGTGAGGGTGCACAACG
TTAGGGGTGTGGCCCAGGCATTGGCTGTGTCCGATGCGATACAGGGGAAA
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