mRNA_M-pyrifera_M_contig113586.2839.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113586.2839.1
Unique NamemRNA_M-pyrifera_M_contig113586.2839.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113586.2839.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 4.390e-22
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:   10 KKVGREMWSTPTDAMDLVTSLKGTPGCYVKWDLDGSGRLNKIFWSTADQQLLAQQYGHLVIQDNTCLTNK 219
            +KV RE WSTPTDA+DLV+ LK   GCYVK+D DG  RL  +FWST  QQ+ A+Q+G +V+QDNT LTN+
Sbjct:   47 QKVQRECWSTPTDALDLVSELKDMAGCYVKYDTDGLHRLKHVFWSTGQQQVFARQWGGIVLQDNTALTNR 116
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BLAST of mRNA_M-pyrifera_M_contig113586.2839.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 2.000e-13
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 NMAKKVGREMWSTPTDAMDLVTSLKGTPGCYVKWDLDGSGRLNKIFWSTADQQLLAQQYGHLVIQDNTCLTNK 219
            NM++KV  E+W++  DA++LV  L+      VKW+LD    L  I W++ +Q LLA+ YG +VIQDNTCLTN+
Sbjct:   24 NMSRKVTGELWASSGDALELVAELERGNET-VKWELDAENILRSIMWASPEQILLARTYGGVVIQDNTCLTNR 95
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113586.2839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE4.390e-2261.43SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FLF6_ECTSI2.000e-1347.95Putative far-red impaired response protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113586contigM-pyrifera_M_contig113586:147..368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue4.9e-10
Seed eggNOG ortholog2880.D7FLF6
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size222
Cds size219
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.9740543-CDS-M-pyrifera_M_contig113586:146..3651622815650.9740543-CDS-M-pyrifera_M_contig113586:146..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113586 147..365 -
1692277505.2608023-CDS-M-pyrifera_M_contig113586:146..3651692277505.2608023-CDS-M-pyrifera_M_contig113586:146..365Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113586 147..365 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.9876502-UTR-M-pyrifera_M_contig113586:365..3681622815650.9876502-UTR-M-pyrifera_M_contig113586:365..368Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113586 366..368 -
1692277505.2738266-UTR-M-pyrifera_M_contig113586:365..3681692277505.2738266-UTR-M-pyrifera_M_contig113586:365..368Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113586 366..368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113586.2839.1prot_M-pyrifera_M_contig113586.2839.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113586 147..365 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113586.2839.1

>prot_M-pyrifera_M_contig113586.2839.1 ID=prot_M-pyrifera_M_contig113586.2839.1|Name=mRNA_M-pyrifera_M_contig113586.2839.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
MAKKVGREMWSTPTDAMDLVTSLKGTPGCYVKWDLDGSGRLNKIFWSTAD
QQLLAQQYGHLVIQDNTCLTNK*
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mRNA from alignment at M-pyrifera_M_contig113586:147..368-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113586.2839.1 ID=mRNA_M-pyrifera_M_contig113586.2839.1|Name=mRNA_M-pyrifera_M_contig113586.2839.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig113586:147..368- (Macrocystis pyrifera P11B4 male)
AACATGGCAAAGAAAGTGGGACGCGAAATGTGGTCGACGCCCACCGACGC
AATGGATCTAGTGACGTCGTTGAAGGGCACGCCTGGTTGCTACGTCAAGT
GGGACTTGGACGGTTCAGGTCGACTGAACAAGATTTTCTGGTCTACCGCC
GATCAGCAACTCCTTGCGCAGCAATACGGCCACCTTGTTATTCAGGATAA
CACCTGCCTGACGAACAAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113586:147..368-

>mRNA_M-pyrifera_M_contig113586.2839.1 ID=mRNA_M-pyrifera_M_contig113586.2839.1|Name=mRNA_M-pyrifera_M_contig113586.2839.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig113586:147..368- (Macrocystis pyrifera P11B4 male)
ATGGCAAAGAAAGTGGGACGCGAAATGTGGTCGACGCCCACCGACGCAAT
GGATCTAGTGACGTCGTTGAAGGGCACGCCTGGTTGCTACGTCAAGTGGG
ACTTGGACGGTTCAGGTCGACTGAACAAGATTTTCTGGTCTACCGCCGAT
CAGCAACTCCTTGCGCAGCAATACGGCCACCTTGTTATTCAGGATAACAC
CTGCCTGACGAACAAGTGAATGGCAAAGAAAGTGGGACGCGAAATGTGGT
CGACGCCCACCGACGCAATGGATCTAGTGACGTCGTTGAAGGGCACGCCT
GGTTGCTACGTCAAGTGGGACTTGGACGGTTCAGGTCGACTGAACAAGAT
TTTCTGGTCTACCGCCGATCAGCAACTCCTTGCGCAGCAATACGGCCACC
TTGTTATTCAGGATAACACCTGCCTGACGAACAAGTGA
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