mRNA_M-pyrifera_M_contig113568.2832.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113568.2832.1
Unique NamemRNA_M-pyrifera_M_contig113568.2832.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113568.2832.1 vs. uniprot
Match: UPI00199D7767 (Lipoate--protein ligase family protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=UPI00199D7767)

HSP 1 Score: 134 bits (336), Expect = 9.010e-37
Identity = 63/116 (54.31%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    4 GASRQGTRDLASGDLKFSGNSMRVKRTHLLYHGTLLYDFPLQQISKLLKPPPREPEYRLGRRHEQFVQNLDATAEQLTQALIDAWQPTSTMTAWPREEVQRLVKERYSQSSWNYRH 351
            G   +GT DL  G+ KFSGNS+R KR+HLLYHGTLLYDF +    K L P PR+P YR GR H QFV N+  ++ ++ QA+  A+Q +  +T WPRE V  LV+ERYS+ SWN RH
Sbjct:  124 GVQIRGTSDLTVGESKFSGNSLRCKRSHLLYHGTLLYDFDVSLFDKYLGPAPRQPAYRKGRTHRQFVTNIPLSSAEMKQAVSSAFQASRNLTRWPREMVHHLVQERYSEESWNQRH 239          
BLAST of mRNA_M-pyrifera_M_contig113568.2832.1 vs. uniprot
Match: A0A2E2Y2D0_9PLAN (Lipoate-protein ligase A related protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E2Y2D0_9PLAN)

HSP 1 Score: 132 bits (333), Expect = 2.900e-36
Identity = 63/109 (57.80%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   16 QGTRDLASGDLKFSGNSMRVKRTHLLYHGTLLYDFPLQQISKLLKPPPREPEYRLGRRHEQFVQNLDATAEQLTQALIDAWQPTSTMTAWPREEVQRLVKERYSQSSWN 342
            QGT DL     KFSGNS+R KR H+LYHGTLLYDFPLQQIS  L  PPR+P+ R  R HE FV NL   A+QL Q LI+ WQP     +WP E  ++ V  RYSQ+ WN
Sbjct:  128 QGTSDLVVAGRKFSGNSLRCKRNHILYHGTLLYDFPLQQISXFLXMPPRQPDXRQXRSHEDFVMNLXTGADQLRQLLIEQWQPVQQXESWPCERTRQXVATRYSQADWN 236          
BLAST of mRNA_M-pyrifera_M_contig113568.2832.1 vs. uniprot
Match: A0A847GZD9_9BACT (Lipoate--protein ligase family protein n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847GZD9_9BACT)

HSP 1 Score: 131 bits (329), Expect = 1.020e-35
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 1
Query:   16 QGTRDLASGDLKFSGNSMRVKRTHLLYHGTLLYDFPLQQISKLLKPPPREPEYRLGRRHEQFVQNLDATAEQLTQALIDAWQPTSTMTAWPREEVQRLVKERYSQSSWNYR 348
            QGT DL   D KFSGNS+RV+RTHLLYHGT+LY+FPL  +S+ L+ PPR+P YR GRRH++F+ NL A+   L +ALI  W      T WP +    LV  RYSQ+ WN+R
Sbjct:  128 QGTSDLTLDDRKFSGNSLRVRRTHLLYHGTILYEFPLSLVSECLRTPPRQPCYRQGRRHDEFLVNLPASRSALQEALIAGWAAFEPWTDWPSQRTLDLVDSRYSQAEWNFR 238          
BLAST of mRNA_M-pyrifera_M_contig113568.2832.1 vs. uniprot
Match: A0A2E0AW93_9BACT (Lipoate-protein ligase A related protein n=2 Tax=Planctomycetia TaxID=203683 RepID=A0A2E0AW93_9BACT)

HSP 1 Score: 129 bits (325), Expect = 3.970e-35
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 1
Query:   13 RQGTRDLASGDLKFSGNSMRVKRTHLLYHGTLLYDFPLQQISKLLKPPPREPEYRLGRRHEQFVQNLDATAEQLTQALIDAWQPTSTMTAWPREEVQRLVKERYSQSSWNYR 348
            ++GT DL  G+ KFSGNS+R KR HLLYHGTLLYDFPL+ I + L  PPR+PEYR GR H++FV NL  T   L  ALI  WQ T  +  WP++      ++RY Q +WN R
Sbjct:  126 QKGTSDLVIGETKFSGNSLRCKRNHLLYHGTLLYDFPLELIGECLGTPPRQPEYRRGRTHDRFVANLQTTGVALRNALIAQWQATVPLEDWPKDLTAEFAEQRYRQDAWNLR 237          
BLAST of mRNA_M-pyrifera_M_contig113568.2832.1 vs. uniprot
Match: A0A5Q3L6U3_9BACT (Lipoate-protein ligase LplJ n=1 Tax=Planctomycetales bacterium 10988 TaxID=2603660 RepID=A0A5Q3L6U3_9BACT)

HSP 1 Score: 129 bits (324), Expect = 6.700e-35
Identity = 59/112 (52.68%), Postives = 77/112 (68.75%), Query Frame = 1
Query:   13 RQGTRDLASGDLKFSGNSMRVKRTHLLYHGTLLYDFPLQQISKLLKPPPREPEYRLGRRHEQFVQNLDATAEQLTQALIDAWQPTSTMTAWPREEVQRLVKERYSQSSWNYR 348
            R+G  DL  G+ K SGNS++VKR HLLYHGT LY +PL++IS+ LK PPREPEYR GR H  FV+NL+  A+ L  A+ +AW   +  T WP   V+ LV+ +Y Q+ WN R
Sbjct:  133 REGISDLVCGETKVSGNSLQVKRYHLLYHGTFLYSYPLEKISRYLKTPPREPEYRAGRTHASFVENLEVPAQMLKTAMRNAWNAEAIRTDWPEANVKDLVETKYQQAEWNAR 244          
BLAST of mRNA_M-pyrifera_M_contig113568.2832.1 vs. uniprot
Match: A0A518IV13_9BACT (Lipoate-protein ligase LplJ n=2 Tax=Rosistilla oblonga TaxID=2527990 RepID=A0A518IV13_9BACT)

HSP 1 Score: 128 bits (322), Expect = 1.210e-34
Identity = 60/112 (53.57%), Postives = 79/112 (70.54%), Query Frame = 1
Query:   16 QGTRDLASGDLKFSGNSMRVKRTHLLYHGTLLYDFPLQQISKLLKPPPREPEYRLGRRHEQFVQNLDATAEQLTQALIDAWQPTSTMTAWPREEVQRLVKERYSQSSWNYRH 351
            QGT DL   + KFSGNS+RV R HLLYHGTLL+DFP+  + + L+ PPR+P+YR GR H+QFV NL     QL  A+ DA++    +  WP+E V +LV+ RYS+S WN+RH
Sbjct:  130 QGTCDLTWQNRKFSGNSLRVARRHLLYHGTLLFDFPIDLVQQTLRVPPRQPDYREGRSHDQFVINLPLGELQLRDAMADAFEVQGNLQQWPQERVHQLVESRYSKSEWNFRH 241          
BLAST of mRNA_M-pyrifera_M_contig113568.2832.1 vs. uniprot
Match: A0A2G2L716_9BACT (Lipoate-protein ligase A related protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2L716_9BACT)

HSP 1 Score: 127 bits (320), Expect = 2.300e-34
Identity = 63/115 (54.78%), Postives = 75/115 (65.22%), Query Frame = 1
Query:    1 PGASRQGTRDLASGDLKFSGNSMRVKRTHLLYHGTLLYDFPLQQISKLLKPPPREPEYRLGRRHEQFVQNLDATAEQLTQALIDAWQPTSTMTAWPREEVQRLVKERYSQSSWNY 345
            PG S QGT DL   + KFSGNS+R KRTHLLYHGTLL DFPL+ IS+ LK PP+ P YR  R HE FV NL  + ++L   L  AW     MT WP      LV E+YSQ++WN+
Sbjct:  123 PGVSMQGTCDLTWKNQKFSGNSLRCKRTHLLYHGTLLCDFPLELISQCLKRPPKVPNYRENRDHESFVTNLPVSIDKLRTELRSAWNAAEAMTDWPESLTAELVAEKYSQAAWNH 237          
BLAST of mRNA_M-pyrifera_M_contig113568.2832.1 vs. uniprot
Match: UPI001E409DC3 (lipoate--protein ligase family protein n=1 Tax=unclassified Blastopirellula TaxID=2647022 RepID=UPI001E409DC3)

HSP 1 Score: 125 bits (314), Expect = 1.830e-33
Identity = 61/113 (53.98%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    4 GASRQGTRDLASGDLKFSGNSMRVKRTHLLYHGTLLYDFPLQQISKLLKPPPREPEYRLGRRHEQFVQNLDATAEQLTQALIDAWQPTSTMTAWPREEVQRLVKERYSQSSWN 342
            G + QGT DL   + KFSGNS+RVKR H+LYHGTLLYDFPL+ I+  L+ PPR P+YR  R H QFV NL  + EQL  ALI+ W     +T WP++    LV ERY+   WN
Sbjct:  124 GVAFQGTCDLTWNNRKFSGNSLRVKRDHVLYHGTLLYDFPLELIADCLRHPPRTPDYREQRDHTQFVTNLPISREQLKAALIETWGADQPLTEWPQQRTADLVAERYATDEWN 236          
BLAST of mRNA_M-pyrifera_M_contig113568.2832.1 vs. uniprot
Match: A0A3E0PPE0_9BACT (Lipoate--protein ligase family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PPE0_9BACT)

HSP 1 Score: 127 bits (319), Expect = 2.130e-33
Identity = 62/111 (55.86%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   16 QGTRDLASGDLKFSGNSMRVKRTHLLYHGTLLYDFPLQQISKLLKPPPREPEYRLGRRHEQFVQNLDATAEQLTQALIDAWQPTSTMTAWPREEVQRLVKERYSQSSWNYR 348
            +GT DL  GDLKFSGNS+R +R  LLYHGTLLYDFPL  +S  LK PPREP+YR  R H  FV NL    E L QALI AW       +WP++ V +LV E+Y ++ WN+R
Sbjct:  210 RGTCDLTLGDLKFSGNSVRCRRRALLYHGTLLYDFPLPLVSHCLKTPPREPDYRRQREHAAFVTNLPLGVEPLRQALIAAWSAQPGTESWPKQRVAQLVAEQYCRADWNFR 320          
BLAST of mRNA_M-pyrifera_M_contig113568.2832.1 vs. uniprot
Match: A0A517M657_9BACT (Lipoate-protein ligase LplJ n=1 Tax=Rosistilla ulvae TaxID=1930277 RepID=A0A517M657_9BACT)

HSP 1 Score: 124 bits (312), Expect = 3.840e-33
Identity = 59/112 (52.68%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   16 QGTRDLASGDLKFSGNSMRVKRTHLLYHGTLLYDFPLQQISKLLKPPPREPEYRLGRRHEQFVQNLDATAEQLTQALIDAWQPTSTMTAWPREEVQRLVKERYSQSSWNYRH 351
            QGT DL   + KFSGNS+RV R H+LYHGTLLYDFP++ +   L+ PPR+P+YR GR H+QFV NL    +QL  AL  A+   + M  WP E V +LV+ RY +  WN+RH
Sbjct:  130 QGTCDLTWQNRKFSGNSLRVARRHVLYHGTLLYDFPIELVQNTLRVPPRQPDYREGRSHDQFVINLPLGEQQLRNALAKAFAAHTNMQQWPVERVHQLVESRYGKPEWNFRH 241          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113568.2832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00199D77679.010e-3754.31Lipoate--protein ligase family protein n=1 Tax=Pir... [more]
A0A2E2Y2D0_9PLAN2.900e-3657.80Lipoate-protein ligase A related protein n=1 Tax=P... [more]
A0A847GZD9_9BACT1.020e-3554.95Lipoate--protein ligase family protein n=1 Tax=Can... [more]
A0A2E0AW93_9BACT3.970e-3553.57Lipoate-protein ligase A related protein n=2 Tax=P... [more]
A0A5Q3L6U3_9BACT6.700e-3552.68Lipoate-protein ligase LplJ n=1 Tax=Planctomycetal... [more]
A0A518IV13_9BACT1.210e-3453.57Lipoate-protein ligase LplJ n=2 Tax=Rosistilla obl... [more]
A0A2G2L716_9BACT2.300e-3454.78Lipoate-protein ligase A related protein n=1 Tax=B... [more]
UPI001E409DC31.830e-3353.98lipoate--protein ligase family protein n=1 Tax=unc... [more]
A0A3E0PPE0_9BACT2.130e-3355.86Lipoate--protein ligase family protein n=1 Tax=Pla... [more]
A0A517M657_9BACT3.840e-3352.68Lipoate-protein ligase LplJ n=1 Tax=Rosistilla ulv... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113568contigM-pyrifera_M_contig113568:9..362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score104.4
Seed ortholog evalue3.8e-20
Seed eggNOG ortholog344747.PM8797T_21293
KEGG rclassRC00043,RC00070,RC00090,RC00992,RC02896
KEGG koko:K03800
KEGG ReactionR07770,R07771,R11143
KEGG Pathwayko00785,ko01100,map00785,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM Biotin lipoate A B protein ligase
EggNOG OGs2J0D8@203682,COG0095@1,COG0095@2
EC6.3.1.20
COG Functional cat.H
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.7001946-CDS-M-pyrifera_M_contig113568:8..3621622815650.7001946-CDS-M-pyrifera_M_contig113568:8..362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113568 9..362 +
1692277505.1383567-CDS-M-pyrifera_M_contig113568:8..3621692277505.1383567-CDS-M-pyrifera_M_contig113568:8..362Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113568 9..362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113568.2832.1prot_M-pyrifera_M_contig113568.2832.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113568 9..362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113568.2832.1

>prot_M-pyrifera_M_contig113568.2832.1 ID=prot_M-pyrifera_M_contig113568.2832.1|Name=mRNA_M-pyrifera_M_contig113568.2832.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
PGASRQGTRDLASGDLKFSGNSMRVKRTHLLYHGTLLYDFPLQQISKLLK
PPPREPEYRLGRRHEQFVQNLDATAEQLTQALIDAWQPTSTMTAWPREEV
QRLVKERYSQSSWNYRH*
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mRNA from alignment at M-pyrifera_M_contig113568:9..362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113568.2832.1 ID=mRNA_M-pyrifera_M_contig113568.2832.1|Name=mRNA_M-pyrifera_M_contig113568.2832.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig113568:9..362+ (Macrocystis pyrifera P11B4 male)
CCGGGAGCCTCCAGACAAGGCACCAGGGATTTGGCCTCGGGCGATCTGAA GTTTTCCGGCAATAGCATGCGAGTGAAACGAACCCATTTGCTCTATCACG GTACGCTGCTGTACGATTTCCCGCTTCAACAGATTTCGAAACTGCTCAAA CCACCGCCACGCGAACCCGAATACCGCCTAGGTCGTCGCCACGAGCAATT CGTGCAGAACCTTGATGCAACTGCTGAACAGCTAACGCAAGCGCTAATCG ACGCCTGGCAACCAACGTCTACGATGACCGCATGGCCGCGGGAAGAAGTG CAGCGTTTGGTGAAAGAACGCTATAGCCAAAGTTCCTGGAATTATCGGCA TTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113568:9..362+

>mRNA_M-pyrifera_M_contig113568.2832.1 ID=mRNA_M-pyrifera_M_contig113568.2832.1|Name=mRNA_M-pyrifera_M_contig113568.2832.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig113568:9..362+ (Macrocystis pyrifera P11B4 male)
CCGGGAGCCTCCAGACAAGGCACCAGGGATTTGGCCTCGGGCGATCTGAA
GTTTTCCGGCAATAGCATGCGAGTGAAACGAACCCATTTGCTCTATCACG
GTACGCTGCTGTACGATTTCCCGCTTCAACAGATTTCGAAACTGCTCAAA
CCACCGCCACGCGAACCCGAATACCGCCTAGGTCGTCGCCACGAGCAATT
CGTGCAGAACCTTGATGCAACTGCTGAACAGCTAACGCAAGCGCTAATCG
ACGCCTGGCAACCAACGTCTACGATGACCGCATGGCCGCGGGAAGAAGTG
CAGCGTTTGGTGAAAGAACGCTATAGCCAAAGTTCCTGGAATTATCGGCA
TTGACCGGGAGCCTCCAGACAAGGCACCAGGGATTTGGCCTCGGGCGATC
TGAAGTTTTCCGGCAATAGCATGCGAGTGAAACGAACCCATTTGCTCTAT
CACGGTACGCTGCTGTACGATTTCCCGCTTCAACAGATTTCGAAACTGCT
CAAACCACCGCCACGCGAACCCGAATACCGCCTAGGTCGTCGCCACGAGC
AATTCGTGCAGAACCTTGATGCAACTGCTGAACAGCTAACGCAAGCGCTA
ATCGACGCCTGGCAACCAACGTCTACGATGACCGCATGGCCGCGGGAAGA
AGTGCAGCGTTTGGTGAAAGAACGCTATAGCCAAAGTTCCTGGAATTATC
GGCATTGA
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