mRNA_M-pyrifera_M_contig113546.2825.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113546.2825.1
Unique NamemRNA_M-pyrifera_M_contig113546.2825.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113546.2825.1 vs. uniprot
Match: A0A7V8V1G8_9BACT (Uncharacterized protein n=2 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8V1G8_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 4.580e-12
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    1 LQLSTAAILILSAVTMQADAPSRAEIDARFQTQLNALA 114
            LQLSTAAILILSAVTMQADAPSRAEIDARFQTQLNALA
Sbjct:   71 LQLSTAAILILSAVTMQADAPSRAEIDARFQTQLNALA 108
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BLAST of mRNA_M-pyrifera_M_contig113546.2825.1 vs. uniprot
Match: A0A518C2C6_9BACT (Leucine Rich repeats (2 copies) n=2 Tax=Bremerella volcania TaxID=2527984 RepID=A0A518C2C6_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 4.430e-9
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 LQLSTAAILILSAVTMQADAPSRAEIDARFQTQLNALA 114
            LQL+TAAILILSAVTMQA+APSRAEIDARFQ QL+ LA
Sbjct:   60 LQLTTAAILILSAVTMQAEAPSRAEIDARFQAQLSELA 97
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BLAST of mRNA_M-pyrifera_M_contig113546.2825.1 vs. uniprot
Match: A0A2S8FXE8_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8FXE8_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 6.060e-9
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 LQLSTAAILILSAVTMQADAPSRAEIDARFQTQLNALA 114
            +QL+TAAILILSAVTMQA+APSR E DARFQTQLN LA
Sbjct:    1 MQLTTAAILILSAVTMQAEAPSRVETDARFQTQLNELA 38
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BLAST of mRNA_M-pyrifera_M_contig113546.2825.1 vs. uniprot
Match: UPI001CC9C52A (hypothetical protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CC9C52A)

HSP 1 Score: 57.8 bits (138), Expect = 1.130e-8
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 LQLSTAAILILSAVTMQADAPSRAEIDARFQTQLNALA 114
            +QLSTAAILI+SAVTMQ +APSR EIDARFQ+QLN LA
Sbjct:    1 MQLSTAAILIISAVTMQTEAPSRVEIDARFQSQLNELA 38
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113546.2825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7V8V1G8_9BACT4.580e-12100.00Uncharacterized protein n=2 Tax=Bremerella alba Ta... [more]
A0A518C2C6_9BACT4.430e-986.84Leucine Rich repeats (2 copies) n=2 Tax=Bremerella... [more]
A0A2S8FXE8_9BACT6.060e-984.21Uncharacterized protein n=1 Tax=Blastopirellula ma... [more]
UPI001CC9C52A1.130e-881.58hypothetical protein n=1 Tax=Bremerella volcania T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113546contigM-pyrifera_M_contig113546:3..116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.371318-CDS-M-pyrifera_M_contig113546:2..1161622815650.371318-CDS-M-pyrifera_M_contig113546:2..116Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113546 3..116 -
1692277504.9851663-CDS-M-pyrifera_M_contig113546:2..1161692277504.9851663-CDS-M-pyrifera_M_contig113546:2..116Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113546 3..116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113546.2825.1prot_M-pyrifera_M_contig113546.2825.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113546 3..116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113546.2825.1

>prot_M-pyrifera_M_contig113546.2825.1 ID=prot_M-pyrifera_M_contig113546.2825.1|Name=mRNA_M-pyrifera_M_contig113546.2825.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
LQLSTAAILILSAVTMQADAPSRAEIDARFQTQLNALA
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mRNA from alignment at M-pyrifera_M_contig113546:3..116-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113546.2825.1 ID=mRNA_M-pyrifera_M_contig113546.2825.1|Name=mRNA_M-pyrifera_M_contig113546.2825.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig113546:3..116- (Macrocystis pyrifera P11B4 male)
TTGCAACTATCCACCGCTGCCATCCTGATCCTTTCGGCCGTGACGATGCA
AGCCGATGCACCGTCTCGGGCGGAGATCGACGCGCGTTTTCAGACGCAGC
TCAACGCGTTGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113546:3..116-

>mRNA_M-pyrifera_M_contig113546.2825.1 ID=mRNA_M-pyrifera_M_contig113546.2825.1|Name=mRNA_M-pyrifera_M_contig113546.2825.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig113546:3..116- (Macrocystis pyrifera P11B4 male)
TTGCAACTATCCACCGCTGCCATCCTGATCCTTTCGGCCGTGACGATGCA
AGCCGATGCACCGTCTCGGGCGGAGATCGACGCGCGTTTTCAGACGCAGC
TCAACGCGTTGGCCTTGCAACTATCCACCGCTGCCATCCTGATCCTTTCG
GCCGTGACGATGCAAGCCGATGCACCGTCTCGGGCGGAGATCGACGCGCG
TTTTCAGACGCAGCTCAACGCGTTGGCC
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