mRNA_M-pyrifera_M_contig113542.2824.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113542.2824.1
Unique NamemRNA_M-pyrifera_M_contig113542.2824.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113542.2824.1 vs. uniprot
Match: A9P0N6_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P0N6_PICSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.200e-12
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 KIAPDPEWAVYGFPASREEV-LEGKKTWNLNVGAWTSRCA--AGGGPEPPYRPWTTLNIGPEMGLGGEASILAEWTVADFDVLV 243
            ++ P PEWA++G+PA + E  +E  +TW L+VGA +SR       G  P  R W+++++G E+ + G   I AEWTV+DFDVL+
Sbjct:  275 QLLPHPEWAIHGYPAHKGEGWIEDPRTWELDVGALSSRLYFYQDPGTPPAKRLWSSIDVGTEVYISGSDEI-AEWTVSDFDVLI 357
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BLAST of mRNA_M-pyrifera_M_contig113542.2824.1 vs. uniprot
Match: A0A2P6PFE7_ROSCH (Uncharacterized protein n=2 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PFE7_ROSCH)

HSP 1 Score: 68.2 bits (165), Expect = 1.710e-11
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    1 KIAPDPEWAVYGFPASREEVLEGK-KTWNLNVGAWTSRCA--AGGGPEPPYRPWTTLNIGPEMGLGGEASILAEWTVADFDVLV 243
            +I P PEW+V+G+P  + +   G  +TWNL+VGA +SR       G EP  R W+++N+G E+ +   A   AEWTV++FDVLV
Sbjct:  417 QILPHPEWSVHGYPEKKGDGWIGDPRTWNLDVGALSSRLYFYQDPGTEPAKRVWSSINVGTEIYVSS-AGETAEWTVSEFDVLV 499
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BLAST of mRNA_M-pyrifera_M_contig113542.2824.1 vs. uniprot
Match: A0A6P6UU28_COFAR (uncharacterized protein LOC113714505 n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6UU28_COFAR)

HSP 1 Score: 66.2 bits (160), Expect = 8.090e-11
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    1 KIAPDPEWAVYGFPASREEVLEGK-KTWNLNVGAWTSRCA--AGGGPEPPYRPWTTLNIGPEMGLGGEASILAEWTVADFDVLV 243
            ++ P P WA YG+P+ R E   G  +TW LNVGA +SR       G  P  R WT+L++G E+ +  +  + AEWT++DFDV++
Sbjct:  410 QLLPHPVWAEYGYPSKRGEGWVGDGRTWELNVGALSSRLYFYQDPGTRPARRIWTSLDVGTEIFVSNKEEV-AEWTLSDFDVIL 492
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BLAST of mRNA_M-pyrifera_M_contig113542.2824.1 vs. uniprot
Match: A0A835MHG6_9ROSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Salix dunnii TaxID=1413687 RepID=A0A835MHG6_9ROSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.360e-6
Identity = 29/85 (34.12%), Postives = 48/85 (56.47%), Query Frame = 1 
Query:    1 KIAPDPEWAVYGFPASREEVLEGK-KTWNLNVGAWTSRCA--AGGGPEPPYRPWTTLNIGPEMGLGGEASILAEWTVADFDVLVQ 246
            +I P P W  YG+P  + E   G  ++W L+VG  +         G +P  R W ++++G E+ +  +   +AEWTV+DFD+L+Q
Sbjct:  760 QIIPHPVWGHYGYPTKKGEGWIGDPRSWELDVGKLSQSLYFYQDPGTKPVERHWPSIDLGTEIYISNDQ--VAEWTVSDFDILLQ 842
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BLAST of mRNA_M-pyrifera_M_contig113542.2824.1 vs. uniprot
Match: A0A7S4C9E9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C9E9_9EUGL)

HSP 1 Score: 49.3 bits (116), Expect = 5.510e-5
Identity = 32/81 (39.51%), Postives = 43/81 (53.09%), Query Frame = 1 
Query:    4 IAPDPEWAVYGFPASREEVLEGKKTWN-LNVGAWTSRCAAGGGPEPPYRPWTTLNIGPEMGLGGEASILAEWTVADFDVLV 243
            +APDPEWA +GFPA   +   G   W+ LNVG   ++         P     T+NIGPE G G   S    + ++DFD+LV
Sbjct:  138 LAPDPEWAHWGFPAHAGDGFVGDPKWHELNVGGLFTQIWFPCMTTKPIE-IVTVNIGPETGYG-TGSHDTNFLISDFDILV 216
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113542.2824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A9P0N6_PICSI2.200e-1242.86Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A2P6PFE7_ROSCH1.710e-1144.05Uncharacterized protein n=2 Tax=Rosa chinensis Tax... [more]
A0A6P6UU28_COFAR8.090e-1141.67uncharacterized protein LOC113714505 n=4 Tax=Coffe... [more]
A0A835MHG6_9ROSI1.360e-634.12Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S4C9E9_9EUGL5.510e-539.51Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113542contigM-pyrifera_M_contig113542:10..261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.8
Seed ortholog evalue8.7e-11
Seed eggNOG ortholog29760.VIT_18s0041g02110.t01
Hectar predicted targeting categoryother localisation
EggNOG free text desc.BEST Arabidopsis thaliana protein match is
EggNOG OGs2BZ08@1,2QRBU@2759,37M2N@33090,3G7Z7@35493
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.334809-CDS-M-pyrifera_M_contig113542:9..2611622815650.334809-CDS-M-pyrifera_M_contig113542:9..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113542 10..261 +
1692277504.975936-CDS-M-pyrifera_M_contig113542:9..2611692277504.975936-CDS-M-pyrifera_M_contig113542:9..261Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113542 10..261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113542.2824.1prot_M-pyrifera_M_contig113542.2824.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113542 10..261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113542.2824.1

>prot_M-pyrifera_M_contig113542.2824.1 ID=prot_M-pyrifera_M_contig113542.2824.1|Name=mRNA_M-pyrifera_M_contig113542.2824.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
KIAPDPEWAVYGFPASREEVLEGKKTWNLNVGAWTSRCAAGGGPEPPYRP
WTTLNIGPEMGLGGEASILAEWTVADFDVLVQV*
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mRNA from alignment at M-pyrifera_M_contig113542:10..261+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113542.2824.1 ID=mRNA_M-pyrifera_M_contig113542.2824.1|Name=mRNA_M-pyrifera_M_contig113542.2824.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig113542:10..261+ (Macrocystis pyrifera P11B4 male)
AAAATTGCACCCGATCCAGAGTGGGCTGTGTATGGTTTTCCTGCCTCGCG
GGAGGAGGTGCTGGAAGGGAAGAAGACGTGGAACCTCAACGTCGGGGCGT
GGACCAGCAGGTGTGCTGCGGGAGGAGGCCCAGAACCACCCTACCGCCCA
TGGACAACGCTCAACATCGGACCAGAAATGGGACTTGGAGGAGAAGCATC
CATTCTCGCAGAGTGGACTGTCGCAGACTTTGACGTCCTCGTGCAAGTGT
GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113542:10..261+

>mRNA_M-pyrifera_M_contig113542.2824.1 ID=mRNA_M-pyrifera_M_contig113542.2824.1|Name=mRNA_M-pyrifera_M_contig113542.2824.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig113542:10..261+ (Macrocystis pyrifera P11B4 male)
AAAATTGCACCCGATCCAGAGTGGGCTGTGTATGGTTTTCCTGCCTCGCG
GGAGGAGGTGCTGGAAGGGAAGAAGACGTGGAACCTCAACGTCGGGGCGT
GGACCAGCAGGTGTGCTGCGGGAGGAGGCCCAGAACCACCCTACCGCCCA
TGGACAACGCTCAACATCGGACCAGAAATGGGACTTGGAGGAGAAGCATC
CATTCTCGCAGAGTGGACTGTCGCAGACTTTGACGTCCTCGTGCAAGTGT
GAAAAATTGCACCCGATCCAGAGTGGGCTGTGTATGGTTTTCCTGCCTCG
CGGGAGGAGGTGCTGGAAGGGAAGAAGACGTGGAACCTCAACGTCGGGGC
GTGGACCAGCAGGTGTGCTGCGGGAGGAGGCCCAGAACCACCCTACCGCC
CATGGACAACGCTCAACATCGGACCAGAAATGGGACTTGGAGGAGAAGCA
TCCATTCTCGCAGAGTGGACTGTCGCAGACTTTGACGTCCTCGTGCAAGT
GTGA
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