mRNA_M-pyrifera_M_contig113532.2822.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113532.2822.1
Unique NamemRNA_M-pyrifera_M_contig113532.2822.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113532.2822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113532contigM-pyrifera_M_contig113532:1..576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score63.2
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog7070.TC003947-PA
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Zinc finger protein
EggNOG OGs38BZ9@33154,3BA9A@33208,3CT35@33213,3SJ74@50557,41WW3@6656,KOG1721@1,KOG1721@2759
COG Functional cat.S
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons1
Model size576
Cds size576
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.2359211-CDS-M-pyrifera_M_contig113532:0..5761622815650.2359211-CDS-M-pyrifera_M_contig113532:0..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113532 1..576 +
1692277504.932994-CDS-M-pyrifera_M_contig113532:0..5761692277504.932994-CDS-M-pyrifera_M_contig113532:0..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113532 1..576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113532.2822.1prot_M-pyrifera_M_contig113532.2822.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113532 1..576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113532.2822.1

>prot_M-pyrifera_M_contig113532.2822.1 ID=prot_M-pyrifera_M_contig113532.2822.1|Name=mRNA_M-pyrifera_M_contig113532.2822.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp
RCGECKKLFGQKGSLLTHLRHVHLNERRFGCDHCEYCAQTRQVLHRHILR
KHRPKVSITCNLCLRQMSLVSWPAHLRECHRGVSLRCEACGKEFKSSGGL
LHHKRSAHLGIRYSCPDCSKTFAGPSGLRAHKAAHSGVKHECVECGKKFS
HNGGLLRHQRSAHLGLRYSCPDCSKTFSDPSGLRRHKAIHAG
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mRNA from alignment at M-pyrifera_M_contig113532:1..576+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113532.2822.1 ID=mRNA_M-pyrifera_M_contig113532.2822.1|Name=mRNA_M-pyrifera_M_contig113532.2822.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig113532:1..576+ (Macrocystis pyrifera P11B4 male)
CGGTGTGGTGAGTGCAAGAAGCTGTTTGGGCAGAAAGGTAGTCTCTTGAC
GCATCTTCGGCATGTTCATTTGAATGAGCGTCGTTTTGGTTGTGATCATT
GTGAGTATTGTGCCCAGACACGTCAAGTTCTACATCGCCACATCCTCCGC
AAGCACCGTCCCAAGGTGAGCATCACATGCAATCTTTGCCTTCGTCAGAT
GTCGCTTGTTTCCTGGCCTGCTCACCTTCGTGAATGTCATCGTGGTGTAT
CATTGCGGTGTGAGGCATGTGGGAAGGAGTTCAAGTCGTCTGGTGGTCTC
CTCCACCACAAGAGGAGCGCTCATTTAGGCATTCGCTACTCTTGTCCAGA
TTGCTCCAAGACGTTTGCTGGTCCATCTGGCCTTCGTGCTCACAAGGCTG
CGCATTCTGGTGTGAAGCATGAGTGTGTGGAATGTGGAAAGAAGTTTTCA
CACAACGGTGGTCTCCTCCGCCACCAGAGAAGCGCTCATTTAGGCCTCCG
CTACTCGTGTCCAGATTGCTCCAAGACTTTTTCTGATCCATCTGGCCTTC
GTCGTCACAAGGCTATCCATGCTGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113532:1..576+

>mRNA_M-pyrifera_M_contig113532.2822.1 ID=mRNA_M-pyrifera_M_contig113532.2822.1|Name=mRNA_M-pyrifera_M_contig113532.2822.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig113532:1..576+ (Macrocystis pyrifera P11B4 male)
CGGTGTGGTGAGTGCAAGAAGCTGTTTGGGCAGAAAGGTAGTCTCTTGAC
GCATCTTCGGCATGTTCATTTGAATGAGCGTCGTTTTGGTTGTGATCATT
GTGAGTATTGTGCCCAGACACGTCAAGTTCTACATCGCCACATCCTCCGC
AAGCACCGTCCCAAGGTGAGCATCACATGCAATCTTTGCCTTCGTCAGAT
GTCGCTTGTTTCCTGGCCTGCTCACCTTCGTGAATGTCATCGTGGTGTAT
CATTGCGGTGTGAGGCATGTGGGAAGGAGTTCAAGTCGTCTGGTGGTCTC
CTCCACCACAAGAGGAGCGCTCATTTAGGCATTCGCTACTCTTGTCCAGA
TTGCTCCAAGACGTTTGCTGGTCCATCTGGCCTTCGTGCTCACAAGGCTG
CGCATTCTGGTGTGAAGCATGAGTGTGTGGAATGTGGAAAGAAGTTTTCA
CACAACGGTGGTCTCCTCCGCCACCAGAGAAGCGCTCATTTAGGCCTCCG
CTACTCGTGTCCAGATTGCTCCAAGACTTTTTCTGATCCATCTGGCCTTC
GTCGTCACAAGGCTATCCATGCTGGTCGGTGTGGTGAGTGCAAGAAGCTG
TTTGGGCAGAAAGGTAGTCTCTTGACGCATCTTCGGCATGTTCATTTGAA
TGAGCGTCGTTTTGGTTGTGATCATTGTGAGTATTGTGCCCAGACACGTC
AAGTTCTACATCGCCACATCCTCCGCAAGCACCGTCCCAAGGTGAGCATC
ACATGCAATCTTTGCCTTCGTCAGATGTCGCTTGTTTCCTGGCCTGCTCA
CCTTCGTGAATGTCATCGTGGTGTATCATTGCGGTGTGAGGCATGTGGGA
AGGAGTTCAAGTCGTCTGGTGGTCTCCTCCACCACAAGAGGAGCGCTCAT
TTAGGCATTCGCTACTCTTGTCCAGATTGCTCCAAGACGTTTGCTGGTCC
ATCTGGCCTTCGTGCTCACAAGGCTGCGCATTCTGGTGTGAAGCATGAGT
GTGTGGAATGTGGAAAGAAGTTTTCACACAACGGTGGTCTCCTCCGCCAC
CAGAGAAGCGCTCATTTAGGCCTCCGCTACTCGTGTCCAGATTGCTCCAA
GACTTTTTCTGATCCATCTGGCCTTCGTCGTCACAAGGCTATCCATGCTG
GT
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