mRNA_M-pyrifera_M_contig113528.2821.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113528.2821.1
Unique NamemRNA_M-pyrifera_M_contig113528.2821.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig113528.2821.1 vs. uniprot
Match: UPI0019559F44 (signal recognition particle subunit SRP68-like n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI0019559F44)

HSP 1 Score: 67.4 bits (163), Expect = 1.100e-11
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    4 QQNGLRHGDFGRYHGYCSRRLRRLRRGKGVGLTFGNGKPSRKGHAQAFSFRRVADEEVVEERHLLVGLFFVERAWAQFEDLKLQA 258
            QQ+GLRHGD+ RY GYCSRRLRRLR  K +G   GN           F+ ++V  E + + RHLL+ L   ERAW+    LK +A
Sbjct:   40 QQHGLRHGDYQRYRGYCSRRLRRLR--KTLGFKMGN--------RHKFTGKKVTVEMLSDNRHLLLVLMEAERAWSYAMQLKQEA 114
[Close]
BLAST of mRNA_M-pyrifera_M_contig113528.2821.1 vs. uniprot
Match: A0A3B3RXY2_9TELE (Signal recognition particle subunit SRP68 n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RXY2_9TELE)

HSP 1 Score: 68.2 bits (165), Expect = 2.010e-11
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    4 QQNGLRHGDFGRYHGYCSRRLRRLRRGKGVGLTFGNGKPSRKGHAQAFSFRRVADEEVVEERHLLVGLFFVERAWAQFEDLKLQA 258
            QQ+GLRHGD+ RY GYCSRRLRRLR  K +G   GN           F+ ++V ++ + + R+LL+ L   ERAW+    LK++A
Sbjct:   69 QQHGLRHGDYQRYRGYCSRRLRRLR--KTLGFKMGN--------RHKFTGKKVTEDMLTDNRYLLLVLMEAERAWSYSMQLKMEA 143
[Close]
BLAST of mRNA_M-pyrifera_M_contig113528.2821.1 vs. uniprot
Match: UPI001CFBB7EF (signal recognition particle subunit SRP68 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBB7EF)

HSP 1 Score: 67.8 bits (164), Expect = 2.750e-11
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:    4 QQNGLRHGDFGRYHGYCSRRLRRLRRGKGVGLTFGNGKPSRKGHAQAFSFRRVADEEVVEERHLLVGLFFVERAWAQFEDLKLQA 258
            QQ+GLRHGDF RY GYCSRRLRRLR  K +G   GN           F+ ++V+ E + + R+LL+ L   ERAW+    LK +A
Sbjct:   65 QQHGLRHGDFQRYRGYCSRRLRRLR--KTLGFKMGN--------RHKFTGKKVSAEMLTDNRYLLLVLMNAERAWSYAMQLKQEA 139
[Close]
BLAST of mRNA_M-pyrifera_M_contig113528.2821.1 vs. uniprot
Match: UPI002013DE58 (signal recognition particle subunit SRP68-like isoform X2 n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI002013DE58)

HSP 1 Score: 67.4 bits (163), Expect = 3.670e-11
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    4 QQNGLRHGDFGRYHGYCSRRLRRLRRGKGVGLTFGNGKPSRKGHAQAFSFRRVADEEVVEERHLLVGLFFVERAWAQFEDLKLQA 258
            QQ+GLRHGD+ RY GYCSRRLRRLR  K +G   GN           F+ ++V  E + + RHLL+ L   ERAW+    LK +A
Sbjct:   23 QQHGLRHGDYQRYRGYCSRRLRRLR--KTLGFKMGN--------RHKFTGKKVTVEMLSDNRHLLLVLMEAERAWSYAMQLKQEA 97
[Close]
BLAST of mRNA_M-pyrifera_M_contig113528.2821.1 vs. uniprot
Match: UPI00071E495B (signal recognition particle subunit SRP68-like n=1 Tax=Calidris pugnax TaxID=198806 RepID=UPI00071E495B)

HSP 1 Score: 65.1 bits (157), Expect = 5.040e-11
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    4 QQNGLRHGDFGRYHGYCSRRLRRLRRGKGVGLTFGNGKPSRKGHAQAFSFRRVADEEVVEERHLLVGLFFVERAWAQFEDLKLQA 258
            QQ+GLRHGDF RY GYCSRRLRRLR  K +    GN           F+ ++V +E + + R+LL+ L   ERAW+    LK +A
Sbjct:   60 QQHGLRHGDFQRYRGYCSRRLRRLR--KTLNFKMGN--------RHKFTGKKVTEEILSDNRYLLLILMDAERAWSYAMQLKQEA 134
[Close]
BLAST of mRNA_M-pyrifera_M_contig113528.2821.1 vs. uniprot
Match: A0A673JTM4_9TELE (Signal recognition particle subunit SRP68 n=10 Tax=Cyprinidae TaxID=7953 RepID=A0A673JTM4_9TELE)

HSP 1 Score: 67.0 bits (162), Expect = 5.110e-11
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    4 QQNGLRHGDFGRYHGYCSRRLRRLRRGKGVGLTFGNGKPSRKGHAQAFSFRRVADEEVVEERHLLVGLFFVERAWAQFEDLKLQA 258
            QQ+GLRHGD+ RY GYCSRRLRRLR  K +G   GN           F+ ++V  E + + RHLL+ L   ERAW+    LK +A
Sbjct:   49 QQHGLRHGDYQRYRGYCSRRLRRLR--KTLGFKMGN--------RHKFTGKKVTVELLSDNRHLLLVLMEAERAWSYAMQLKQEA 123
[Close]
BLAST of mRNA_M-pyrifera_M_contig113528.2821.1 vs. uniprot
Match: A0A672LEH9_SINGR (Signal recognition particle subunit SRP68 n=9 Tax=Cyprinoidei TaxID=30727 RepID=A0A672LEH9_SINGR)

HSP 1 Score: 67.0 bits (162), Expect = 5.110e-11
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    4 QQNGLRHGDFGRYHGYCSRRLRRLRRGKGVGLTFGNGKPSRKGHAQAFSFRRVADEEVVEERHLLVGLFFVERAWAQFEDLKLQA 258
            QQ+GLRHGD+ RY GYCSRRLRRLR  K +G   GN           F+ ++V  E + + RHLL+ L   ERAW+    LK +A
Sbjct:   41 QQHGLRHGDYQRYRGYCSRRLRRLR--KTLGFKMGN--------RHKFTGKKVTVELLSDNRHLLLVLMEAERAWSYAMQLKQEA 115
[Close]
BLAST of mRNA_M-pyrifera_M_contig113528.2821.1 vs. uniprot
Match: A0A6P8F9T6_CLUHA (Signal recognition particle subunit SRP68 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8F9T6_CLUHA)

HSP 1 Score: 67.0 bits (162), Expect = 5.120e-11
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    4 QQNGLRHGDFGRYHGYCSRRLRRLRRGKGVGLTFGNGKPSRKGHAQAFSFRRVADEEVVEERHLLVGLFFVERAWAQFEDLKLQA 258
            QQ+GLRHGD+ RY GYCSRRLRRLR+  G  +          GH   F+ ++V  E V + R+LL+ L   ERAW+    LK +A
Sbjct:   34 QQHGLRHGDYQRYRGYCSRRLRRLRKTLGFKV----------GHRHKFTGKKVTVEMVSDNRYLLLVLMESERAWSYAMQLKQEA 108
[Close]
BLAST of mRNA_M-pyrifera_M_contig113528.2821.1 vs. uniprot
Match: A0A6P6KF73_CARAU (Signal recognition particle subunit SRP68 n=14 Tax=Cyprinoidei TaxID=30727 RepID=A0A6P6KF73_CARAU)

HSP 1 Score: 67.0 bits (162), Expect = 5.120e-11
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    4 QQNGLRHGDFGRYHGYCSRRLRRLRRGKGVGLTFGNGKPSRKGHAQAFSFRRVADEEVVEERHLLVGLFFVERAWAQFEDLKLQA 258
            QQ+GLRHGD+ RY GYCSRRLRRLR  K +G   GN           F+ ++V  E + + RHLL+ L   ERAW+    LK +A
Sbjct:   39 QQHGLRHGDYQRYRGYCSRRLRRLR--KTLGFKMGN--------RHKFTGKKVTVELLSDNRHLLLVLMEAERAWSYAMQLKQEA 113
[Close]
BLAST of mRNA_M-pyrifera_M_contig113528.2821.1 vs. uniprot
Match: Q6DH97_DANRE (Signal recognition particle subunit SRP68 n=1 Tax=Danio rerio TaxID=7955 RepID=Q6DH97_DANRE)

HSP 1 Score: 65.9 bits (159), Expect = 9.360e-11
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1 
Query:    4 QQNGLRHGDFGRYHGYCSRRLRRLRRGKGVGLTFGNGKPSRKGHAQAFSFRRVADEEVVEERHLLVGLFFVERAWAQFEDLKLQA 258
            QQ+GLRHGD+ RY GYCSRRLRRLR  K +G   GN           F+ ++V  E + + R+LL+ L   ERAW+    LK +A
Sbjct:   29 QQHGLRHGDYQRYRGYCSRRLRRLR--KALGFKMGN--------RHKFTGKKVTVEMLSDNRYLLLVLMEAERAWSYAMQLKQEA 103
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113528.2821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019559F441.100e-1147.06signal recognition particle subunit SRP68-like n=1... [more]
A0A3B3RXY2_9TELE2.010e-1144.71Signal recognition particle subunit SRP68 n=2 Tax=... [more]
UPI001CFBB7EF2.750e-1147.06signal recognition particle subunit SRP68 n=1 Tax=... [more]
UPI002013DE583.670e-1147.06signal recognition particle subunit SRP68-like iso... [more]
UPI00071E495B5.040e-1145.88signal recognition particle subunit SRP68-like n=1... [more]
A0A673JTM4_9TELE5.110e-1147.06Signal recognition particle subunit SRP68 n=10 Tax... [more]
A0A672LEH9_SINGR5.110e-1147.06Signal recognition particle subunit SRP68 n=9 Tax=... [more]
A0A6P8F9T6_CLUHA5.120e-1145.88Signal recognition particle subunit SRP68 n=1 Tax=... [more]
A0A6P6KF73_CARAU5.120e-1147.06Signal recognition particle subunit SRP68 n=14 Tax... [more]
Q6DH97_DANRE9.360e-1145.88Signal recognition particle subunit SRP68 n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113528contigM-pyrifera_M_contig113528:249..512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.8
Seed ortholog evalue2.9e-09
Seed eggNOG ortholog8090.ENSORLP00000001040
Preferred nameSRP68
KEGG koko:K03107
KEGG TC3.A.5.9
KEGG Pathwayko03060,map03060
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005047,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005786,GO:0005829,GO:0005840,GO:0005912,GO:0005924,GO:0005925,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008312,GO:0012505,GO:0015031,GO:0015833,GO:0019904,GO:0030054,GO:0030055,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042221,GO:0042493,GO:0042886,GO:0043021,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048500,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070161,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:1901363,GO:1990904
EggNOG free text desc.Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane
EggNOG OGs38E9N@33154,3BE4U@33208,3CVHY@33213,4874M@7711,48YB8@7742,49SDH@7898,KOG2460@1,KOG2460@2759
COG Functional cat.U
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.193824-CDS-M-pyrifera_M_contig113528:248..5121622815650.193824-CDS-M-pyrifera_M_contig113528:248..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113528 249..512 +
1692277504.9172425-CDS-M-pyrifera_M_contig113528:248..5121692277504.9172425-CDS-M-pyrifera_M_contig113528:248..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113528 249..512 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113528.2821.1prot_M-pyrifera_M_contig113528.2821.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113528 249..512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113528.2821.1

>prot_M-pyrifera_M_contig113528.2821.1 ID=prot_M-pyrifera_M_contig113528.2821.1|Name=mRNA_M-pyrifera_M_contig113528.2821.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=88bp
RQQNGLRHGDFGRYHGYCSRRLRRLRRGKGVGLTFGNGKPSRKGHAQAFS
FRRVADEEVVEERHLLVGLFFVERAWAQFEDLKLQAAD
back to top

mRNA from alignment at M-pyrifera_M_contig113528:249..512+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113528.2821.1 ID=mRNA_M-pyrifera_M_contig113528.2821.1|Name=mRNA_M-pyrifera_M_contig113528.2821.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=264bp|location=Sequence derived from alignment at M-pyrifera_M_contig113528:249..512+ (Macrocystis pyrifera P11B4 male)
CGTCAGCAGAACGGGCTGCGCCACGGGGACTTTGGGCGGTACCACGGGTA
CTGCAGCCGCCGGTTGCGTCGCTTGCGGCGCGGGAAAGGGGTGGGATTGA
CCTTTGGGAACGGCAAGCCGAGTCGGAAGGGCCATGCGCAGGCGTTTTCG
TTCCGTCGAGTGGCGGACGAGGAGGTCGTGGAGGAGCGGCATCTGCTGGT
GGGCCTGTTTTTCGTGGAACGCGCATGGGCGCAATTTGAAGACCTCAAGC
TGCAAGCAGCAGAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig113528:249..512+

>mRNA_M-pyrifera_M_contig113528.2821.1 ID=mRNA_M-pyrifera_M_contig113528.2821.1|Name=mRNA_M-pyrifera_M_contig113528.2821.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig113528:249..512+ (Macrocystis pyrifera P11B4 male)
CGTCAGCAGAACGGGCTGCGCCACGGGGACTTTGGGCGGTACCACGGGTA
CTGCAGCCGCCGGTTGCGTCGCTTGCGGCGCGGGAAAGGGGTGGGATTGA
CCTTTGGGAACGGCAAGCCGAGTCGGAAGGGCCATGCGCAGGCGTTTTCG
TTCCGTCGAGTGGCGGACGAGGAGGTCGTGGAGGAGCGGCATCTGCTGGT
GGGCCTGTTTTTCGTGGAACGCGCATGGGCGCAATTTGAAGACCTCAAGC
TGCAAGCAGCAGACCGTCAGCAGAACGGGCTGCGCCACGGGGACTTTGGG
CGGTACCACGGGTACTGCAGCCGCCGGTTGCGTCGCTTGCGGCGCGGGAA
AGGGGTGGGATTGACCTTTGGGAACGGCAAGCCGAGTCGGAAGGGCCATG
CGCAGGCGTTTTCGTTCCGTCGAGTGGCGGACGAGGAGGTCGTGGAGGAG
CGGCATCTGCTGGTGGGCCTGTTTTTCGTGGAACGCGCATGGGCGCAATT
TGAAGACCTCAAGCTGCAAGCAGCAGAC
back to top