mRNA_M-pyrifera_M_contig11350.2815.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Match: D7FXM7_ECTSI (Coatomer subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXM7_ECTSI) HSP 1 Score: 112 bits (280), Expect = 1.080e-28 Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1
Query: 1 LQAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSLANAETAFDRVASTFAIA 204
++AISKS NDAD L+NLIC RHL KPASF+DRYI+QLK AHPQHPYVQSLANAE+AFDRVA+TFA+A
Sbjct: 228 VEAISKSQNDADTLVNLICVCRHLDKPASFVDRYINQLKTAHPQHPYVQSLANAESAFDRVAATFALA 295
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Match: A0A834IUG7_RHYFE (Coatomer subunit epsilon n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834IUG7_RHYFE) HSP 1 Score: 63.5 bits (153), Expect = 2.780e-10 Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 4 QAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSLANAETAFDRVASTFA 198
+A++K + +AD LINLI RHL K F +RY+ QLK AHP+HP+++ L E+ F R+ +A
Sbjct: 215 EALTKDSKNADTLINLIALQRHLEKGPEFANRYLSQLKDAHPEHPFIKDLKQKESDFLRIRQQYA 279
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Match: U9T177_RHIID (Coatomer subunit epsilon n=8 Tax=Glomeraceae TaxID=36751 RepID=U9T177_RHIID) HSP 1 Score: 62.8 bits (151), Expect = 6.010e-10 Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 1 LQAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSLANAETAFDRVASTFAI 201
L+A++KS +D D L+NLI L KPA ++RYI+QLK A P H ++Q L + FDR A FA+
Sbjct: 243 LEALNKSNDDPDTLVNLIVVSNLLNKPAEVVNRYINQLKEASPNHAFLQDLDLKSSLFDRAAQRFAL 309
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Match: U4TY18_DENPD (Coatomer subunit epsilon n=3 Tax=Dendroctonus ponderosae TaxID=77166 RepID=U4TY18_DENPD) HSP 1 Score: 60.1 bits (144), Expect = 5.500e-9 Identity = 24/64 (37.50%), Postives = 42/64 (65.62%), Query Frame = 1
Query: 4 QAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSLANAETAFDRVASTF 195
+A+ K +N+A+ LIN+I +HL K +RY+ QL+ AHP+HP+++ L ET F+++ +
Sbjct: 231 EALDKDSNNAEILINMIALQKHLDKGPEMSNRYLSQLRDAHPEHPFIRDLKQKETDFEKICQQY 294
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Match: A0A6J2YBR4_SITOR (Coatomer subunit epsilon n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YBR4_SITOR) HSP 1 Score: 60.1 bits (144), Expect = 5.520e-9 Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 1
Query: 4 QAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSLANAETAFDRVASTF 195
+A++K + +AD LINLI RHL K F +RY+ QLK AHP+H +++ L E+ F R+ +
Sbjct: 231 EALTKDSKNADTLINLITLQRHLEKGPEFANRYLSQLKDAHPEHAFIKDLKQKESDFARICQQY 294
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Match: A0A7R9UFD7_9STRA (Coatomer subunit epsilon n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFD7_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 3.680e-8 Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1
Query: 4 QAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSLANAETAFDRVASTFAI 201
+A+ K N+ + LIN+I LGKP RY+ QL+A P HP+V+ L E AFDRV++ ++
Sbjct: 231 EALEKGPNNPETLINMIAACYQLGKPRDATQRYVSQLRANAPDHPFVKRLDTLEQAFDRVSAQLSV 296
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Match: A7SPR7_NEMVE (Coatomer subunit epsilon n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SPR7_NEMVE) HSP 1 Score: 52.4 bits (124), Expect = 3.180e-6 Identity = 22/65 (33.85%), Postives = 39/65 (60.00%), Query Frame = 1
Query: 4 QAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSLANAETAFDRVASTFA 198
+A+ K +N+A+ L+NL+ ++ K +RY+ QLK AHP H + + E F+R++S +A
Sbjct: 230 EALEKDSNNAETLVNLVVLSQYTAKAPEVSNRYLSQLKDAHPHHAFTKDYIAKENEFNRISSQYA 294 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11350.2815.1 >prot_M-pyrifera_M_contig11350.2815.1 ID=prot_M-pyrifera_M_contig11350.2815.1|Name=mRNA_M-pyrifera_M_contig11350.2815.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp LQAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSback to top mRNA from alignment at M-pyrifera_M_contig11350:8529..8735+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig11350.2815.1 ID=mRNA_M-pyrifera_M_contig11350.2815.1|Name=mRNA_M-pyrifera_M_contig11350.2815.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig11350:8529..8735+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig11350:8529..8735+ >mRNA_M-pyrifera_M_contig11350.2815.1 ID=mRNA_M-pyrifera_M_contig11350.2815.1|Name=mRNA_M-pyrifera_M_contig11350.2815.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig11350:8529..8735+ (Macrocystis pyrifera P11B4 male)back to top |