mRNA_M-pyrifera_M_contig11350.2815.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11350.2815.1
Unique NamemRNA_M-pyrifera_M_contig11350.2815.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Match: D7FXM7_ECTSI (Coatomer subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXM7_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.080e-28
Identity = 54/68 (79.41%), Postives = 62/68 (91.18%), Query Frame = 1
Query:    1 LQAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSLANAETAFDRVASTFAIA 204
            ++AISKS NDAD L+NLIC  RHL KPASF+DRYI+QLK AHPQHPYVQSLANAE+AFDRVA+TFA+A
Sbjct:  228 VEAISKSQNDADTLVNLICVCRHLDKPASFVDRYINQLKTAHPQHPYVQSLANAESAFDRVAATFALA 295          
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Match: A0A834IUG7_RHYFE (Coatomer subunit epsilon n=1 Tax=Rhynchophorus ferrugineus TaxID=354439 RepID=A0A834IUG7_RHYFE)

HSP 1 Score: 63.5 bits (153), Expect = 2.780e-10
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    4 QAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSLANAETAFDRVASTFA 198
            +A++K + +AD LINLI   RHL K   F +RY+ QLK AHP+HP+++ L   E+ F R+   +A
Sbjct:  215 EALTKDSKNADTLINLIALQRHLEKGPEFANRYLSQLKDAHPEHPFIKDLKQKESDFLRIRQQYA 279          
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Match: U9T177_RHIID (Coatomer subunit epsilon n=8 Tax=Glomeraceae TaxID=36751 RepID=U9T177_RHIID)

HSP 1 Score: 62.8 bits (151), Expect = 6.010e-10
Identity = 31/67 (46.27%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    1 LQAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSLANAETAFDRVASTFAI 201
            L+A++KS +D D L+NLI     L KPA  ++RYI+QLK A P H ++Q L    + FDR A  FA+
Sbjct:  243 LEALNKSNDDPDTLVNLIVVSNLLNKPAEVVNRYINQLKEASPNHAFLQDLDLKSSLFDRAAQRFAL 309          
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Match: U4TY18_DENPD (Coatomer subunit epsilon n=3 Tax=Dendroctonus ponderosae TaxID=77166 RepID=U4TY18_DENPD)

HSP 1 Score: 60.1 bits (144), Expect = 5.500e-9
Identity = 24/64 (37.50%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    4 QAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSLANAETAFDRVASTF 195
            +A+ K +N+A+ LIN+I   +HL K     +RY+ QL+ AHP+HP+++ L   ET F+++   +
Sbjct:  231 EALDKDSNNAEILINMIALQKHLDKGPEMSNRYLSQLRDAHPEHPFIRDLKQKETDFEKICQQY 294          
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Match: A0A6J2YBR4_SITOR (Coatomer subunit epsilon n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YBR4_SITOR)

HSP 1 Score: 60.1 bits (144), Expect = 5.520e-9
Identity = 27/64 (42.19%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    4 QAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSLANAETAFDRVASTF 195
            +A++K + +AD LINLI   RHL K   F +RY+ QLK AHP+H +++ L   E+ F R+   +
Sbjct:  231 EALTKDSKNADTLINLITLQRHLEKGPEFANRYLSQLKDAHPEHAFIKDLKQKESDFARICQQY 294          
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Match: A0A7R9UFD7_9STRA (Coatomer subunit epsilon n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFD7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.680e-8
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1
Query:    4 QAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSLANAETAFDRVASTFAI 201
            +A+ K  N+ + LIN+I     LGKP     RY+ QL+A  P HP+V+ L   E AFDRV++  ++
Sbjct:  231 EALEKGPNNPETLINMIAACYQLGKPRDATQRYVSQLRANAPDHPFVKRLDTLEQAFDRVSAQLSV 296          
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Match: A7SPR7_NEMVE (Coatomer subunit epsilon n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SPR7_NEMVE)

HSP 1 Score: 52.4 bits (124), Expect = 3.180e-6
Identity = 22/65 (33.85%), Postives = 39/65 (60.00%), Query Frame = 1
Query:    4 QAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQSLANAETAFDRVASTFA 198
            +A+ K +N+A+ L+NL+   ++  K     +RY+ QLK AHP H + +     E  F+R++S +A
Sbjct:  230 EALEKDSNNAETLVNLVVLSQYTAKAPEVSNRYLSQLKDAHPHHAFTKDYIAKENEFNRISSQYA 294          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11350.2815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FXM7_ECTSI1.080e-2879.41Coatomer subunit epsilon n=2 Tax=Ectocarpus TaxID=... [more]
A0A834IUG7_RHYFE2.780e-1044.62Coatomer subunit epsilon n=1 Tax=Rhynchophorus fer... [more]
U9T177_RHIID6.010e-1046.27Coatomer subunit epsilon n=8 Tax=Glomeraceae TaxID... [more]
U4TY18_DENPD5.500e-937.50Coatomer subunit epsilon n=3 Tax=Dendroctonus pond... [more]
A0A6J2YBR4_SITOR5.520e-942.19Coatomer subunit epsilon n=1 Tax=Sitophilus oryzae... [more]
A0A7R9UFD7_9STRA3.680e-840.91Coatomer subunit epsilon n=1 Tax=Pinguiococcus pyr... [more]
A7SPR7_NEMVE3.180e-633.85Coatomer subunit epsilon n=1 Tax=Nematostella vect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11350contigM-pyrifera_M_contig11350:8529..8735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue3.6e-23
Seed eggNOG ortholog2880.D7FXM7
Preferred nameCOPE1
KEGG koko:K17268
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0006900,GO:0006901,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071985,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1990841
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG3081@1,KOG3081@2759
Ec32 ortholog descriptionVesicle coat complex COPI, epsilon subunit
Ec32 orthologEc-28_002330.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons1
Model size207
Cds size207
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.8755472-CDS-M-pyrifera_M_contig11350:8528..87351622815649.8755472-CDS-M-pyrifera_M_contig11350:8528..8735Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11350 8529..8735 +
1692277504.7771132-CDS-M-pyrifera_M_contig11350:8528..87351692277504.7771132-CDS-M-pyrifera_M_contig11350:8528..8735Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11350 8529..8735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11350.2815.1prot_M-pyrifera_M_contig11350.2815.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11350 8529..8735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11350.2815.1

>prot_M-pyrifera_M_contig11350.2815.1 ID=prot_M-pyrifera_M_contig11350.2815.1|Name=mRNA_M-pyrifera_M_contig11350.2815.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
LQAISKSANDADALINLICCGRHLGKPASFLDRYIHQLKAAHPQHPYVQS
LANAETAFDRVASTFAIA*
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mRNA from alignment at M-pyrifera_M_contig11350:8529..8735+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11350.2815.1 ID=mRNA_M-pyrifera_M_contig11350.2815.1|Name=mRNA_M-pyrifera_M_contig11350.2815.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig11350:8529..8735+ (Macrocystis pyrifera P11B4 male)
CTCCAGGCAATCAGCAAAAGCGCAAACGACGCGGACGCGCTGATTAACCT GATCTGCTGCGGCCGCCACCTCGGCAAACCGGCCTCCTTTTTGGACCGAT ACATCCACCAGCTTAAGGCCGCCCACCCCCAGCACCCGTACGTGCAGTCT CTGGCTAACGCGGAGACGGCTTTTGACCGGGTAGCTTCAACCTTTGCCAT CGCCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11350:8529..8735+

>mRNA_M-pyrifera_M_contig11350.2815.1 ID=mRNA_M-pyrifera_M_contig11350.2815.1|Name=mRNA_M-pyrifera_M_contig11350.2815.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig11350:8529..8735+ (Macrocystis pyrifera P11B4 male)
CTCCAGGCAATCAGCAAAAGCGCAAACGACGCGGACGCGCTGATTAACCT
GATCTGCTGCGGCCGCCACCTCGGCAAACCGGCCTCCTTTTTGGACCGAT
ACATCCACCAGCTTAAGGCCGCCCACCCCCAGCACCCGTACGTGCAGTCT
CTGGCTAACGCGGAGACGGCTTTTGACCGGGTAGCTTCAACCTTTGCCAT
CGCCTAACTCCAGGCAATCAGCAAAAGCGCAAACGACGCGGACGCGCTGA
TTAACCTGATCTGCTGCGGCCGCCACCTCGGCAAACCGGCCTCCTTTTTG
GACCGATACATCCACCAGCTTAAGGCCGCCCACCCCCAGCACCCGTACGT
GCAGTCTCTGGCTAACGCGGAGACGGCTTTTGACCGGGTAGCTTCAACCT
TTGCCATCGCCTAA
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