mRNA_M-pyrifera_M_contig11348.2809.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11348.2809.1
Unique NamemRNA_M-pyrifera_M_contig11348.2809.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11348.2809.1 vs. uniprot
Match: D8LHB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB5_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 1.340e-41
Identity = 101/144 (70.14%), Postives = 106/144 (73.61%), Query Frame = 1 
Query:    1 KVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEELGQRLAEAIREKRRLRQRFNQYGAAGAPRASATP------------RQYTNGMNNGRRGEYDDGPRGGVGGGGIGGGXXVNXXXXXXXXXVSAGERDKYAKWGSIS 396
            KVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLE+LGQRLAEAIREKRRLRQRFNQYG +   R                 + Y+NGMNNGRRGEYD+G   G  G      XX  XXXXXXXXX  A ERDKYAKWGSIS
Sbjct:  441 KVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEDLGQRLAEAIREKRRLRQRFNQYGGSANHRGGGXXXXXXXXXXXXXRQPYSNGMNNGRRGEYDEG---GSVGRARSXXXXXXXXXXXXXXXXXASERDKYAKWGSIS 581
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BLAST of mRNA_M-pyrifera_M_contig11348.2809.1 vs. uniprot
Match: A0A6H5K285_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K285_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.680e-36
Identity = 74/101 (73.27%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 KVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEELGQRLAEAIREKRRLRQRFNQYGAAGAPRASATPRQ------------YTNGMNNGRRGEYDD 267
            KVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLE+LGQRLAEAIREKRRLRQRFNQYG +   R      +            Y+NGMNNGRRGEYD+
Sbjct:  476 KVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEDLGQRLAEAIREKRRLRQRFNQYGGSANHRGGGGGARGYGGQXXXXRELYSNGMNNGRRGEYDE 576
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BLAST of mRNA_M-pyrifera_M_contig11348.2809.1 vs. uniprot
Match: A0A835YW21_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW21_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.470e-19
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 KVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEELGQRLAEAIREKRRLRQRFNQYGAAG 192
            K YK++GYLWHFT+EEQMDYGP+IVAKFA+ ++R LEELG ++AE IREKRR R R +QY   G
Sbjct:  225 KYYKDYGYLWHFTMEEQMDYGPAIVAKFAYQDKRPLEELGNKIAEGIREKRRTRARLSQYSYGG 288
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BLAST of mRNA_M-pyrifera_M_contig11348.2809.1 vs. uniprot
Match: A0A836C852_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C852_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.590e-19
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1 
Query:    1 KVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEELGQRLAEAIREKRRLRQRFNQY 180
            K YK++GYLWHFTLEEQ+DYGPSIVAKF   ++R LE+LG R+AEAIR+KRR+R R NQY
Sbjct: 1504 KFYKDYGYLWHFTLEEQLDYGPSIVAKFGFQDKRPLEDLGNRIAEAIRDKRRVRARLNQY 1563
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BLAST of mRNA_M-pyrifera_M_contig11348.2809.1 vs. uniprot
Match: A0A6V1S9Y9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S9Y9_HETAK)

HSP 1 Score: 60.8 bits (146), Expect = 1.190e-8
Identity = 33/62 (53.23%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 KVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEELGQRLAEAIREKRRLRQRF-NQYG 183
            K Y+ +GYL HFTLEEQMDYGPS  AKFA H+R+ L+ L   + + I   R LR+ + +QYG
Sbjct:   79 KEYRGYGYLDHFTLEEQMDYGPSTAAKFASHDRQGLQALRDHVLKVISHVRDLRRAYKSQYG 140
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BLAST of mRNA_M-pyrifera_M_contig11348.2809.1 vs. uniprot
Match: W7TUJ4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUJ4_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.520e-8
Identity = 54/142 (38.03%), Postives = 68/142 (47.89%), Query Frame = 1 
Query:    1 KVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEELGQRLAEAI--REKRRLRQRFNQYGAAGAPRA-SATP-------RQYTNGMNNGRRGEYDDGPRGGVGGGGIGGGXXVNXXXXXXXXXVSAGERDKYAKWGSIS 396
            K YK +G L+HFTLEE +DYGPS+VAKFA    + + EL   +   I    K+RLR R     + G+PR  S++P       RQ+      GR G     P+ G    G  G                AG  DKYAKWG IS
Sbjct:  372 KPYKGYGDLYHFTLEEMLDYGPSLVAKFASRRAKSVRELRAVIVAYIIAERKKRLRARRR---SPGSPRVYSSSPYAQGGDYRQHQRSPTVGRTGPRTASPKAGSEASGASG----------------AGGLDKYAKWGQIS 494
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BLAST of mRNA_M-pyrifera_M_contig11348.2809.1 vs. uniprot
Match: A0A482UXB5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UXB5_9ARCH)

HSP 1 Score: 50.8 bits (120), Expect = 9.470e-6
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1 
Query:    1 KVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEELGQRLAEAIREKRRLRQRFN 174
            K YK HG L+HF LEE MDYGP+ V KFA   ++ L E  +RL + I  +R +R + N
Sbjct:   30 KEYKGHGMLYHFMLEELMDYGPNNVGKFASTYQQQLLEFWKRLRQIILVRREIRAKQN 87
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11348.2809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LHB5_ECTSI1.340e-4170.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K285_9PHAE1.680e-3673.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YW21_9STRA1.470e-1967.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C852_9STRA2.590e-1971.67Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A6V1S9Y9_HETAK1.190e-853.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TUJ4_9STRA2.520e-838.03Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A482UXB5_9ARCH9.470e-648.28Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11348contigM-pyrifera_M_contig11348:153..1141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size399
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.5837762-CDS-M-pyrifera_M_contig11348:152..4251622815649.5837762-CDS-M-pyrifera_M_contig11348:152..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11348 153..425 -
1692277504.6472094-CDS-M-pyrifera_M_contig11348:152..4251692277504.6472094-CDS-M-pyrifera_M_contig11348:152..425Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11348 153..425 -
1622815649.5938427-CDS-M-pyrifera_M_contig11348:1015..11411622815649.5938427-CDS-M-pyrifera_M_contig11348:1015..1141Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11348 1016..1141 -
1692277504.657632-CDS-M-pyrifera_M_contig11348:1015..11411692277504.657632-CDS-M-pyrifera_M_contig11348:1015..1141Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11348 1016..1141 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11348.2809.1prot_M-pyrifera_M_contig11348.2809.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11348 153..1141 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11348.2809.1

>prot_M-pyrifera_M_contig11348.2809.1 ID=prot_M-pyrifera_M_contig11348.2809.1|Name=mRNA_M-pyrifera_M_contig11348.2809.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
KVYKEHGYLWHFTLEEQMDYGPSIVAKFAHHERRVLEELGQRLAEAIREK
RRLRQRFNQYGAAGAPRASATPRQYTNGMNNGRRGEYDDGPRGGVGGGGI
GGGGGVNRGGDGVGGGVSAGERDKYAKWGSIS*
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mRNA from alignment at M-pyrifera_M_contig11348:153..1141-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11348.2809.1 ID=mRNA_M-pyrifera_M_contig11348.2809.1|Name=mRNA_M-pyrifera_M_contig11348.2809.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=989bp|location=Sequence derived from alignment at M-pyrifera_M_contig11348:153..1141- (Macrocystis pyrifera P11B4 male)
AAGGTCTACAAGGAGCACGGGTACTTGTGGCACTTCACCCTCGAGGAGCA
GATGGACTACGGCCCGAGCATCGTTGCCAAGTTCGCGCACCACGAGCGTC
GCGTCCTCGAAGAGCTAGGGCAACGGGTGAGTGAAGAAGTCAGCAAGACA
AAAGAACGACAAAGGCTAAGCTTAACATTTTCGTTGCTGCTGTTGGTTGT
TGTTGTTGTTGTTGCTGTTGTTGATGATTGTCTTATATTAACTCATCGTC
CTACCTATTAATAGCTGTGAACTACAGTACATCTATATAAGGTTCAGGTA
AACACTGTTATTCATTGTACCGAAGCCCCTCTGGTATGCTTGTATCGATC
TTTCTTTCCAAATCTATAGCGAAGAACGAGCAGGCGATGCGGCGGCGGCA
GTCGGGGTGGCGGGGGTGGCGGTTGCGGCGACCGAGCCGTGCTACGGTAG
ATAATAAGGTCCTCTACAGTAGCTACAGAATACCTTCACTACGGCACAAT
AAGGCATTTTTTGCTACGATGGAGAAGGGGTACTGTTTGCTACGGTGCTT
GTGGCATAAAATTGGTGCACCTCACGAGTTGTCCTAGCGATTTCTCTCCG
GATGTGTCTGACCACTGTGTCTCACCCCCTGTGTCTCATCCCGGGTCTGA
CCACCTACCTTACCACCACGACCACAACCACGATCGCCACGACCATGACC
GCCGCTGCTTGTGAAGTTGGCCGAGGCCATCCGAGAGAAGCGTCGCCTCC
GTCAACGCTTCAACCAGTACGGAGCGGCGGGGGCCCCGAGGGCATCAGCC
ACCCCCCGGCAATACACGAACGGGATGAACAACGGGCGGCGCGGGGAGTA
CGATGACGGCCCGAGGGGTGGGGTAGGAGGCGGCGGAATTGGAGGAGGCG
GGGGAGTCAACCGTGGAGGTGATGGCGTCGGTGGCGGTGTATCTGCCGGA
GAGAGGGACAAGTACGCTAAGTGGGGATCGATTTCGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11348:153..1141-

>mRNA_M-pyrifera_M_contig11348.2809.1 ID=mRNA_M-pyrifera_M_contig11348.2809.1|Name=mRNA_M-pyrifera_M_contig11348.2809.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig11348:153..1141- (Macrocystis pyrifera P11B4 male)
AAGGTCTACAAGGAGCACGGGTACTTGTGGCACTTCACCCTCGAGGAGCA
GATGGACTACGGCCCGAGCATCGTTGCCAAGTTCGCGCACCACGAGCGTC
GCGTCCTCGAAGAGCTAGGGCAACGGAAGGTCTACAAGGAGCACGGGTAC
TTGTGGCACTTCACCCTCGAGGAGCAGATGGACTACGGCCCGAGCATCGT
TGCCAAGTTCGCGCACCACGAGCGTCGCGTCCTCGAAGAGCTAGGGCAAC
GGTTGGCCGAGGCCATCCGAGAGAAGCGTCGCCTCCGTCAACGCTTCAAC
CAGTACGGAGCGGCGGGGGCCCCGAGGGCATCAGCCACCCCCCGGCAATA
CACGAACGGGATGAACAACGGGCGGCGCGGGGAGTACGATGACGGCCCGA
GGGGTGGGGTAGGAGGCGGCGGAATTGGAGGAGGCGGGGGAGTCAACCGT
GGAGGTGATGGCGTCGGTGGCGGTGTATCTGCCGGAGAGAGGGACAAGTA
CGCTAAGTGGGGATCGATTTCGTGATTGGCCGAGGCCATCCGAGAGAAGC
GTCGCCTCCGTCAACGCTTCAACCAGTACGGAGCGGCGGGGGCCCCGAGG
GCATCAGCCACCCCCCGGCAATACACGAACGGGATGAACAACGGGCGGCG
CGGGGAGTACGATGACGGCCCGAGGGGTGGGGTAGGAGGCGGCGGAATTG
GAGGAGGCGGGGGAGTCAACCGTGGAGGTGATGGCGTCGGTGGCGGTGTA
TCTGCCGGAGAGAGGGACAAGTACGCTAAGTGGGGATCGATTTCGTGA
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