mRNA_M-pyrifera_M_contig113440.2807.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113440.2807.1
Unique NamemRNA_M-pyrifera_M_contig113440.2807.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113440.2807.1 vs. uniprot
Match: D7FQG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG2_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 4.120e-26
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:   10 SLGFVMAVFVASVNAMDYEVSSCDELASIDDTMVTSLTITSTPFECDSYTRFPVRNDMVLKSD-AAVEFSNFALKVLGTLTVEPDVTFGGVTQQ 288
            SL F+ ++      A++Y V++C +LA +DDT VT LTI +  F CD YTRF VRN M LK+  +AVEF NF+LKVLG LTVEPDVTF GV  Q
Sbjct:    5 SLTFIASLLATPAAAVEYMVTTCADLADVDDTQVTGLTIDANTFACDEYTRFRVRNSMTLKATVSAVEFGNFSLKVLGELTVEPDVTFNGVVDQ 98
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BLAST of mRNA_M-pyrifera_M_contig113440.2807.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.060e-25
Identity = 56/95 (58.95%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:   10 SLGFVMAVFVASVNAMDYEVSSCDELASIDDTMVTSLTITSTPFECDSYTRFPVRNDMVLKSD-AAVEFSNFALKVLGTLTVEPDVTFGGVTQQV 291
            SL  +  +  A   A++Y V++C +LA +DDT VT LTI ++ F CD YTRFPVRN M LK+  AAVEF NF+LKVLG LTVEPDVTF GV  QV
Sbjct:    5 SLTLIAGLLAAPAAAVEYTVATCADLADVDDTQVTGLTIDTSTFACDEYTRFPVRNSMTLKATVAAVEFGNFSLKVLGELTVEPDVTFNGVVDQV 99
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BLAST of mRNA_M-pyrifera_M_contig113440.2807.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.100e-23
Identity = 57/99 (57.58%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:    1 MKT-SLGFVMAVFVASVNAMDYEVSSCDELASIDDTMVTSLTITSTPFECDSYTRFPVRNDMVLKSDA-AVEFSNFALKVLGTLTVEPDVTFGGVTQQV 291
            MKT SL  + ++  A   A++Y V++C +LA +DDT VTSLTI ++ F CD YTRF VRN M LK+   AVEF NF+LKVLG LTVEPDV F GV  QV
Sbjct:    1 MKTVSLTLIASLLAAPAAAVEYTVATCADLADVDDTQVTSLTIDASTFACDEYTRFRVRNAMTLKATVPAVEFGNFSLKVLGELTVEPDVMFNGVVDQV 99
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BLAST of mRNA_M-pyrifera_M_contig113440.2807.1 vs. uniprot
Match: A0A6H5KTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD4_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.770e-15
Identity = 43/73 (58.90%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:   67 VSSCDELASIDDTMVTSLTITSTPFECDSYTRFPVRNDMVLKSDAA-VEFSNFALKVLGTLTVEPDVTFGGVT 282
            V SC E A+ID  + T +TIT   F CD YTR  +R++MVLKS    V FSNFALKV G+LTVEPDV F GV+
Sbjct:   26 VGSCTEFAAIDRKVETEVTITEADFACDEYTRLSIRSNMVLKSSVGKVTFSNFALKVYGSLTVEPDVVFTGVS 98
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113440.2807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FQG2_ECTSI4.120e-2656.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ44_ECTSI1.060e-2558.95Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FLJ6_ECTSI1.100e-2357.58Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5KTD4_9PHAE1.770e-1558.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113440contigM-pyrifera_M_contig113440:27..317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size291
Cds size291
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.4995234-CDS-M-pyrifera_M_contig113440:26..3171622815649.4995234-CDS-M-pyrifera_M_contig113440:26..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113440 27..317 -
1692277504.6267114-CDS-M-pyrifera_M_contig113440:26..3171692277504.6267114-CDS-M-pyrifera_M_contig113440:26..317Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113440 27..317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113440.2807.1prot_M-pyrifera_M_contig113440.2807.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113440 27..317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113440.2807.1

>prot_M-pyrifera_M_contig113440.2807.1 ID=prot_M-pyrifera_M_contig113440.2807.1|Name=mRNA_M-pyrifera_M_contig113440.2807.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MKTSLGFVMAVFVASVNAMDYEVSSCDELASIDDTMVTSLTITSTPFECD
SYTRFPVRNDMVLKSDAAVEFSNFALKVLGTLTVEPDVTFGGVTQQV
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mRNA from alignment at M-pyrifera_M_contig113440:27..317-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113440.2807.1 ID=mRNA_M-pyrifera_M_contig113440.2807.1|Name=mRNA_M-pyrifera_M_contig113440.2807.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig113440:27..317- (Macrocystis pyrifera P11B4 male)
ATGAAGACCTCCTTAGGATTCGTAATGGCGGTTTTCGTGGCCTCAGTGAA
CGCCATGGACTACGAGGTCTCGTCGTGCGACGAGCTTGCGAGCATCGACG
ACACCATGGTCACATCTCTCACCATCACCAGCACGCCCTTCGAGTGCGAC
TCGTACACGCGCTTCCCCGTGCGCAACGACATGGTCCTCAAGTCTGACGC
GGCTGTGGAGTTTTCGAACTTCGCGCTGAAAGTATTGGGTACCCTCACCG
TGGAGCCCGACGTGACCTTCGGGGGCGTCACTCAACAGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113440:27..317-

>mRNA_M-pyrifera_M_contig113440.2807.1 ID=mRNA_M-pyrifera_M_contig113440.2807.1|Name=mRNA_M-pyrifera_M_contig113440.2807.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig113440:27..317- (Macrocystis pyrifera P11B4 male)
ATGAAGACCTCCTTAGGATTCGTAATGGCGGTTTTCGTGGCCTCAGTGAA
CGCCATGGACTACGAGGTCTCGTCGTGCGACGAGCTTGCGAGCATCGACG
ACACCATGGTCACATCTCTCACCATCACCAGCACGCCCTTCGAGTGCGAC
TCGTACACGCGCTTCCCCGTGCGCAACGACATGGTCCTCAAGTCTGACGC
GGCTGTGGAGTTTTCGAACTTCGCGCTGAAAGTATTGGGTACCCTCACCG
TGGAGCCCGACGTGACCTTCGGGGGCGTCACTCAACAGGTAATGAAGACC
TCCTTAGGATTCGTAATGGCGGTTTTCGTGGCCTCAGTGAACGCCATGGA
CTACGAGGTCTCGTCGTGCGACGAGCTTGCGAGCATCGACGACACCATGG
TCACATCTCTCACCATCACCAGCACGCCCTTCGAGTGCGACTCGTACACG
CGCTTCCCCGTGCGCAACGACATGGTCCTCAAGTCTGACGCGGCTGTGGA
GTTTTCGAACTTCGCGCTGAAAGTATTGGGTACCCTCACCGTGGAGCCCG
ACGTGACCTTCGGGGGCGTCACTCAACAGGTA
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