mRNA_M-pyrifera_M_contig113402.2803.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113402.2803.1
Unique NamemRNA_M-pyrifera_M_contig113402.2803.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113402.2803.1 vs. uniprot
Match: A0A813R8F4_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813R8F4_9BILA)

HSP 1 Score: 80.1 bits (196), Expect = 6.250e-16
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   19 TCPDGVTSCPSGSTCGQLTTGLWACCRFPNASLCNDHAHCCPAGFSCDVENAVCFQKN 192
            TCP G   CPSGSTC QL++G W CC  PNA  C DH HCCP G++CDV+   C + +
Sbjct:  346 TCPGGSAECPSGSTCCQLSSGDWGCCPIPNAICCQDHQHCCPEGYTCDVKAGRCNKAH 403
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BLAST of mRNA_M-pyrifera_M_contig113402.2803.1 vs. uniprot
Match: A0A6I9J224_CHRAS (granulins n=1 Tax=Chrysochloris asiatica TaxID=185453 RepID=A0A6I9J224_CHRAS)

HSP 1 Score: 79.3 bits (194), Expect = 1.150e-15
Identity = 34/57 (59.65%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   22 CPDGVTSCPSGSTCGQLTTGLWACCRFPNASLCNDHAHCCPAGFSCDVENAVCFQKN 192
            C D V SCP G TC +LTTG W CC F  A  C DH HCCPAGF CD E  +C Q+N
Sbjct:  286 CDDEV-SCPDGYTCCRLTTGNWGCCPFAQAVCCEDHVHCCPAGFKCDKEKEICDQRN 341
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BLAST of mRNA_M-pyrifera_M_contig113402.2803.1 vs. uniprot
Match: A0A3M7R4S2_BRAPC (Granulins-like isoform X4 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7R4S2_BRAPC)

HSP 1 Score: 78.6 bits (192), Expect = 2.170e-15
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   16 TTCPDGVTSCPSGSTCGQLTTGLWACCRFPNASLCNDHAHCCPAGFSCDVENAVC 180
            T CP G   CPSGSTC QL +G W CC  PNA  C DH HCCP G++CD++   C
Sbjct:  411 TVCPGGEAECPSGSTCCQLESGDWGCCPIPNAVCCQDHLHCCPNGYTCDIKGGRC 465
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BLAST of mRNA_M-pyrifera_M_contig113402.2803.1 vs. uniprot
Match: UPI00145B8C47 (progranulin-like isoform X1 n=6 Tax=Acipenseroidei TaxID=186622 RepID=UPI00145B8C47)

HSP 1 Score: 78.6 bits (192), Expect = 2.180e-15
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   28 DGVTSCPSGSTCGQLTTGLWACCRFPNASLCNDHAHCCPAGFSCDVENAVCFQK 189
            D  TSCP GSTC +L+TG WACC  P A  C+DH HCCP G+ CDVE   C ++
Sbjct:  677 DDQTSCPDGSTCCKLSTGDWACCPLPRAVCCDDHEHCCPKGYECDVEQQTCVKQ 730
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BLAST of mRNA_M-pyrifera_M_contig113402.2803.1 vs. uniprot
Match: A0A444TZU8_ACIRT (Histone acetyltransferase n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444TZU8_ACIRT)

HSP 1 Score: 78.6 bits (192), Expect = 2.200e-15
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   28 DGVTSCPSGSTCGQLTTGLWACCRFPNASLCNDHAHCCPAGFSCDVENAVCFQK 189
            D  TSCP GSTC +L+TG WACC  P A  C+DH HCCP G+ CDVE   C ++
Sbjct:  695 DDQTSCPDGSTCCKLSTGDWACCPLPRAVCCDDHEHCCPKGYECDVEQQTCVKQ 748
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BLAST of mRNA_M-pyrifera_M_contig113402.2803.1 vs. uniprot
Match: A0A0D2WJS4_CAPO3 (Grn protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WJS4_CAPO3)

HSP 1 Score: 76.3 bits (186), Expect = 3.940e-15
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   22 CPDGVTSCPSGSTCGQLTTGLWACCRFPNASLCNDHAHCCPAGFSCDVENAVCFQKNGVG 201
            CPDG+TSCPS STC    +G + CC  P+A+ C DH HCCP G+ C+   ++C   +G G
Sbjct:   22 CPDGITSCPSSSTCCVTASGWYGCCPLPSATCCADHVHCCPNGYICNTTQSICTPASGEG 81
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BLAST of mRNA_M-pyrifera_M_contig113402.2803.1 vs. uniprot
Match: A0A6J0U195_9SAUR (granulins isoform X1 n=3 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0U195_9SAUR)

HSP 1 Score: 77.8 bits (190), Expect = 4.050e-15
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = 1 
Query:    1 SSSSPTTCPDGVTSCPSGSTCGQLTTGLWACCRFPNASLCNDHAHCCPAGFSCDVENAVCFQKN 192
            SSS  T C D  TSC  G TC +L TG+WACC FP A  C DH HCCP G+SC+V+ + C + +
Sbjct:  460 SSSRDTKCDD-KTSCADGQTCCRLVTGVWACCPFPQAVCCKDHVHCCPNGYSCNVQRSACVKSS 522
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BLAST of mRNA_M-pyrifera_M_contig113402.2803.1 vs. uniprot
Match: UPI0018D6302A (uncharacterized protein LOC119745555 isoform X1 n=49 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6302A)

HSP 1 Score: 77.4 bits (189), Expect = 5.640e-15
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 1 
Query:   22 CPDGVTSCPSGSTCGQLTTGLWACCRFPNASLCNDHAHCCPAGFSCDVENAVC 180
            CP G   CPSG+TC  L +G W CC  P+A  CNDH HCCP G++CDV    C
Sbjct:  494 CPGGSAQCPSGNTCCMLASGQWGCCPLPSAVCCNDHVHCCPHGYTCDVSQGTC 546
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BLAST of mRNA_M-pyrifera_M_contig113402.2803.1 vs. uniprot
Match: UPI001B7E54D8 (multiple epidermal growth factor-like domains protein 6 isoform X1 n=6 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7E54D8)

HSP 1 Score: 76.3 bits (186), Expect = 1.430e-14
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   28 DGVTSCPSGSTCGQLTTGLWACCRFPNASLCNDHAHCCPAGFSCDVENAVCFQK 189
            D  TSCP G+TC +L+TG WACC   +A  CNDH HCCP G+ CDVE   C ++
Sbjct: 1965 DDQTSCPDGTTCCKLSTGDWACCPLMHAVCCNDHEHCCPKGYKCDVEQQTCVKQ 2018
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BLAST of mRNA_M-pyrifera_M_contig113402.2803.1 vs. uniprot
Match: A0A0R3SMR8_HYMDI (Uncharacterized protein n=1 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3SMR8_HYMDI)

HSP 1 Score: 72.0 bits (175), Expect = 2.240e-14
Identity = 30/56 (53.57%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:   22 CPDGVTSCPSGSTCGQLTTGLWACCRFPNASLCNDHAHCCPAGFSCDVENAVCFQK 189
            C D  T CP  +TC  L  G +ACC  PNA  C DH HCCP G+ CDV N+ C QK
Sbjct:   56 CNDSKTVCPDEATCCTLGDGAFACCPLPNAVCCEDHEHCCPDGYKCDVSNSRCVQK 111
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113402.2803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813R8F4_9BILA6.250e-1655.17Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A6I9J224_CHRAS1.150e-1559.65granulins n=1 Tax=Chrysochloris asiatica TaxID=185... [more]
A0A3M7R4S2_BRAPC2.170e-1556.36Granulins-like isoform X4 n=1 Tax=Brachionus plica... [more]
UPI00145B8C472.180e-1557.41progranulin-like isoform X1 n=6 Tax=Acipenseroidei... [more]
A0A444TZU8_ACIRT2.200e-1557.41Histone acetyltransferase n=1 Tax=Acipenser ruthen... [more]
A0A0D2WJS4_CAPO33.940e-1548.33Grn protein n=1 Tax=Capsaspora owczarzaki (strain ... [more]
A0A6J0U195_9SAUR4.050e-1553.13granulins isoform X1 n=3 Tax=Pogona vitticeps TaxI... [more]
UPI0018D6302A5.640e-1554.72uncharacterized protein LOC119745555 isoform X1 n=... [more]
UPI001B7E54D81.430e-1455.56multiple epidermal growth factor-like domains prot... [more]
A0A0R3SMR8_HYMDI2.240e-1453.57Uncharacterized protein n=1 Tax=Hymenolepis diminu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113402contigM-pyrifera_M_contig113402:289..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score79.3
Seed ortholog evalue7.7e-13
Seed eggNOG ortholog185453.XP_006832801.1
Preferred nameGRN
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000323,GO:0001701,GO:0001775,GO:0001824,GO:0001835,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005768,GO:0005773,GO:0005775,GO:0005783,GO:0006810,GO:0006887,GO:0006897,GO:0006955,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007565,GO:0007566,GO:0007610,GO:0007617,GO:0007618,GO:0008083,GO:0008150,GO:0008283,GO:0008284,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009966,GO:0009987,GO:0010033,GO:0010469,GO:0010646,GO:0010720,GO:0010975,GO:0010976,GO:0012505,GO:0014070,GO:0016192,GO:0019098,GO:0019953,GO:0022008,GO:0022414,GO:0023051,GO:0023052,GO:0030141,GO:0030154,GO:0030545,GO:0031344,GO:0031346,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032355,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0033993,GO:0034774,GO:0035188,GO:0035578,GO:0035988,GO:0036230,GO:0036465,GO:0042119,GO:0042127,GO:0042221,GO:0042582,GO:0043009,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0045055,GO:0045321,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046903,GO:0048018,GO:0048488,GO:0048518,GO:0048522,GO:0048583,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050678,GO:0050679,GO:0050767,GO:0050769,GO:0050773,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051960,GO:0051962,GO:0060179,GO:0060205,GO:0060284,GO:0060998,GO:0060999,GO:0061351,GO:0065007,GO:0065009,GO:0070013,GO:0071684,GO:0097708,GO:0098657,GO:0098772,GO:0099003,GO:0099503,GO:0099504,GO:0120035,GO:1900006,GO:1901700,GO:2000026
EggNOG free text desc.Granulin
EggNOG OGs351GF@311790,39RRJ@33154,3B99G@33208,3D2TI@33213,3JEX3@40674,48C52@7711,495RF@7742,KOG4296@1,KOG4296@2759
COG Functional cat.T
Best tax levelAfrotheria
Best eggNOG OGNA|NA|NA
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.2471926-CDS-M-pyrifera_M_contig113402:288..4981622815649.2471926-CDS-M-pyrifera_M_contig113402:288..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113402 289..498 +
1692277504.4817026-CDS-M-pyrifera_M_contig113402:288..4981692277504.4817026-CDS-M-pyrifera_M_contig113402:288..498Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113402 289..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113402.2803.1prot_M-pyrifera_M_contig113402.2803.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113402 289..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113402.2803.1

>prot_M-pyrifera_M_contig113402.2803.1 ID=prot_M-pyrifera_M_contig113402.2803.1|Name=mRNA_M-pyrifera_M_contig113402.2803.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
SSSSPTTCPDGVTSCPSGSTCGQLTTGLWACCRFPNASLCNDHAHCCPAG
FSCDVENAVCFQKNGVGGG*
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mRNA from alignment at M-pyrifera_M_contig113402:289..498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113402.2803.1 ID=mRNA_M-pyrifera_M_contig113402.2803.1|Name=mRNA_M-pyrifera_M_contig113402.2803.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig113402:289..498+ (Macrocystis pyrifera P11B4 male)
TCCTCCTCCTCCCCCACCACGTGCCCCGATGGCGTCACCTCCTGCCCTTC
AGGGTCCACGTGCGGACAGCTCACAACGGGCCTGTGGGCCTGCTGCCGCT
TCCCAAATGCCAGCCTGTGCAACGACCACGCCCACTGCTGCCCGGCAGGA
TTCAGCTGCGATGTGGAAAACGCCGTGTGCTTCCAGAAAAATGGAGTGGG
AGGTGGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113402:289..498+

>mRNA_M-pyrifera_M_contig113402.2803.1 ID=mRNA_M-pyrifera_M_contig113402.2803.1|Name=mRNA_M-pyrifera_M_contig113402.2803.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig113402:289..498+ (Macrocystis pyrifera P11B4 male)
TCCTCCTCCTCCCCCACCACGTGCCCCGATGGCGTCACCTCCTGCCCTTC
AGGGTCCACGTGCGGACAGCTCACAACGGGCCTGTGGGCCTGCTGCCGCT
TCCCAAATGCCAGCCTGTGCAACGACCACGCCCACTGCTGCCCGGCAGGA
TTCAGCTGCGATGTGGAAAACGCCGTGTGCTTCCAGAAAAATGGAGTGGG
AGGTGGGTAGTCCTCCTCCTCCCCCACCACGTGCCCCGATGGCGTCACCT
CCTGCCCTTCAGGGTCCACGTGCGGACAGCTCACAACGGGCCTGTGGGCC
TGCTGCCGCTTCCCAAATGCCAGCCTGTGCAACGACCACGCCCACTGCTG
CCCGGCAGGATTCAGCTGCGATGTGGAAAACGCCGTGTGCTTCCAGAAAA
ATGGAGTGGGAGGTGGGTAG
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