mRNA_M-pyrifera_M_contig113379.2794.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113379.2794.1
Unique NamemRNA_M-pyrifera_M_contig113379.2794.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig113379.2794.1 vs. uniprot
Match: A0A6I6AFH7_9PLAN (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AFH7_9PLAN)

HSP 1 Score: 261 bits (668), Expect = 2.670e-87
Identity = 136/140 (97.14%), Postives = 137/140 (97.86%), Query Frame = 1 
Query:    1 GTERLENKLVLQKIAHKFREDVSTAQNAEISKQNSQQILKLALRHNTSITYLTNSPGEGIRREYHREGKLVSQDEYLLPLAGVTFQTEIINQQELVSMELNIPDETGHENKTLQAYFQLFRCEAQLNRVGQIQKHSEQTE 420
            GTERLENKLVLQKIAHKFREDVSTAQNAEISKQNSQQILKLALR NTSITYLTNSPGEGIRREYHREGKLVSQDEYLLPLAGVTFQTEI NQQELVSMELNIPD+TGHENKTLQAYFQLFRCEAQLNRVGQIQK SEQTE
Sbjct:   59 GTERLENKLVLQKIAHKFREDVSTAQNAEISKQNSQQILKLALRQNTSITYLTNSPGEGIRREYHREGKLVSQDEYLLPLAGVTFQTEIFNQQELVSMELNIPDKTGHENKTLQAYFQLFRCEAQLNRVGQIQKQSEQTE 198
[Close]
BLAST of mRNA_M-pyrifera_M_contig113379.2794.1 vs. uniprot
Match: A0A517QFQ5_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QFQ5_9PLAN)

HSP 1 Score: 123 bits (308), Expect = 9.310e-33
Identity = 66/136 (48.53%), Postives = 92/136 (67.65%), Query Frame = 1 
Query:    1 GTERLENKLVLQKIAHKFREDVSTAQNAEISKQNSQQILKLALRHNTSITYLTNSPGEGIRREYHREGKLVSQDEYLLPLAGVTFQTEIINQQELVSMELNIPDETGHENKTLQAYFQLFRCEAQLNRVGQIQKHS 408
            GTER+++ L+LQK++H+FR DV+TA+ A +   N +Q L L   H TSI Y     G+ +RRE  +EGKL+SQ+EY L L+   F+   I+QQELVS+EL IP+ET HENKTL+   ++FRCE+ LN   +    S
Sbjct:   54 GTERIQDNLILQKLSHQFRMDVATARQANLMPDNQKQ-LNLDRGHGTSIVYFMTQSGDAMRREIRKEGKLISQEEYRLHLSDTKFE---IDQQELVSLELQIPEETNHENKTLKPLNRVFRCESHLNHQNRFLNQS 185
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113379.2794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6I6AFH7_9PLAN2.670e-8797.14Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A517QFQ5_9PLAN9.310e-3348.53Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113379contigM-pyrifera_M_contig113379:2..424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.856171-CDS-M-pyrifera_M_contig113379:1..4241622815648.856171-CDS-M-pyrifera_M_contig113379:1..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113379 2..424 +
1692277504.3636665-CDS-M-pyrifera_M_contig113379:1..4241692277504.3636665-CDS-M-pyrifera_M_contig113379:1..424Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113379 2..424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113379.2794.1prot_M-pyrifera_M_contig113379.2794.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113379 2..424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113379.2794.1

>prot_M-pyrifera_M_contig113379.2794.1 ID=prot_M-pyrifera_M_contig113379.2794.1|Name=mRNA_M-pyrifera_M_contig113379.2794.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
GTERLENKLVLQKIAHKFREDVSTAQNAEISKQNSQQILKLALRHNTSIT
YLTNSPGEGIRREYHREGKLVSQDEYLLPLAGVTFQTEIINQQELVSMEL
NIPDETGHENKTLQAYFQLFRCEAQLNRVGQIQKHSEQTE*
back to top

mRNA from alignment at M-pyrifera_M_contig113379:2..424+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113379.2794.1 ID=mRNA_M-pyrifera_M_contig113379.2794.1|Name=mRNA_M-pyrifera_M_contig113379.2794.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig113379:2..424+ (Macrocystis pyrifera P11B4 male)
GGAACAGAACGCCTTGAGAATAAACTGGTGCTTCAAAAGATCGCGCACAA
GTTCAGAGAAGATGTGTCTACAGCTCAGAACGCAGAGATATCTAAACAGA
ATAGTCAGCAAATACTTAAGCTGGCACTGCGCCATAACACATCTATCACT
TATTTAACAAATTCCCCGGGTGAAGGAATTCGTCGCGAATATCACAGGGA
AGGTAAACTTGTCTCACAGGATGAATATTTACTCCCGCTGGCAGGTGTTA
CTTTTCAGACAGAAATAATCAATCAGCAGGAACTGGTTTCTATGGAGCTG
AATATTCCAGATGAGACAGGGCATGAGAATAAAACTCTGCAAGCTTATTT
CCAATTATTCCGGTGTGAAGCACAGTTGAATCGTGTCGGTCAGATTCAGA
AACATTCAGAGCAGACAGAGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig113379:2..424+

>mRNA_M-pyrifera_M_contig113379.2794.1 ID=mRNA_M-pyrifera_M_contig113379.2794.1|Name=mRNA_M-pyrifera_M_contig113379.2794.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig113379:2..424+ (Macrocystis pyrifera P11B4 male)
GGAACAGAACGCCTTGAGAATAAACTGGTGCTTCAAAAGATCGCGCACAA
GTTCAGAGAAGATGTGTCTACAGCTCAGAACGCAGAGATATCTAAACAGA
ATAGTCAGCAAATACTTAAGCTGGCACTGCGCCATAACACATCTATCACT
TATTTAACAAATTCCCCGGGTGAAGGAATTCGTCGCGAATATCACAGGGA
AGGTAAACTTGTCTCACAGGATGAATATTTACTCCCGCTGGCAGGTGTTA
CTTTTCAGACAGAAATAATCAATCAGCAGGAACTGGTTTCTATGGAGCTG
AATATTCCAGATGAGACAGGGCATGAGAATAAAACTCTGCAAGCTTATTT
CCAATTATTCCGGTGTGAAGCACAGTTGAATCGTGTCGGTCAGATTCAGA
AACATTCAGAGCAGACAGAGTGAGGAACAGAACGCCTTGAGAATAAACTG
GTGCTTCAAAAGATCGCGCACAAGTTCAGAGAAGATGTGTCTACAGCTCA
GAACGCAGAGATATCTAAACAGAATAGTCAGCAAATACTTAAGCTGGCAC
TGCGCCATAACACATCTATCACTTATTTAACAAATTCCCCGGGTGAAGGA
ATTCGTCGCGAATATCACAGGGAAGGTAAACTTGTCTCACAGGATGAATA
TTTACTCCCGCTGGCAGGTGTTACTTTTCAGACAGAAATAATCAATCAGC
AGGAACTGGTTTCTATGGAGCTGAATATTCCAGATGAGACAGGGCATGAG
AATAAAACTCTGCAAGCTTATTTCCAATTATTCCGGTGTGAAGCACAGTT
GAATCGTGTCGGTCAGATTCAGAAACATTCAGAGCAGACAGAGTGA
back to top