mRNA_M-pyrifera_M_contig113265.2770.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113265.2770.1
Unique NamemRNA_M-pyrifera_M_contig113265.2770.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113265.2770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113265contigM-pyrifera_M_contig113265:94..531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.4
Seed ortholog evalue2e-10
Seed eggNOG ortholog595460.RRSWK_04920
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs2J13X@203682,COG2319@1,COG2319@2,COG4249@1,COG4249@2
COG Functional cat.U
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size438
Cds size438
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.6978807-CDS-M-pyrifera_M_contig113265:93..5311622815647.6978807-CDS-M-pyrifera_M_contig113265:93..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113265 94..531 -
1692277503.8666716-CDS-M-pyrifera_M_contig113265:93..5311692277503.8666716-CDS-M-pyrifera_M_contig113265:93..531Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113265 94..531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113265.2770.1prot_M-pyrifera_M_contig113265.2770.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113265 94..531 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113265.2770.1

>prot_M-pyrifera_M_contig113265.2770.1 ID=prot_M-pyrifera_M_contig113265.2770.1|Name=mRNA_M-pyrifera_M_contig113265.2770.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
QAVVELYDTASGQLLDLYRVSVEEHCNSVTISPDGQYLATHADDAQDVLV
FRLTDGAGGLIPKPLSGQQPIRLHSRAERVTRVAFKKPQPGQSAYQIGFS
TSPDRQILSEFDFSGPDLIRLAGPAPLDTFITPDTFAAGWQAVRAE
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mRNA from alignment at M-pyrifera_M_contig113265:94..531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113265.2770.1 ID=mRNA_M-pyrifera_M_contig113265.2770.1|Name=mRNA_M-pyrifera_M_contig113265.2770.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig113265:94..531- (Macrocystis pyrifera P11B4 male)
CAAGCTGTCGTTGAACTCTACGACACGGCATCCGGTCAATTACTGGACCT
CTATCGTGTCTCTGTGGAAGAACACTGCAATTCGGTGACGATCAGCCCTG
ATGGTCAATACCTCGCCACCCATGCAGACGACGCACAAGATGTTCTCGTG
TTTCGACTAACTGATGGTGCGGGAGGACTCATTCCTAAACCACTGTCCGG
TCAACAACCCATCCGACTGCACAGTCGTGCTGAGCGTGTCACGAGAGTGG
CCTTTAAGAAACCGCAACCCGGTCAATCGGCTTACCAGATTGGCTTCAGC
ACCTCTCCTGACAGACAGATCCTCTCAGAATTTGACTTCTCCGGACCAGA
TTTAATTCGCCTTGCAGGTCCAGCACCTCTCGATACCTTCATCACTCCCG
ACACCTTCGCAGCAGGCTGGCAGGCGGTGCGTGCGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113265:94..531-

>mRNA_M-pyrifera_M_contig113265.2770.1 ID=mRNA_M-pyrifera_M_contig113265.2770.1|Name=mRNA_M-pyrifera_M_contig113265.2770.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig113265:94..531- (Macrocystis pyrifera P11B4 male)
CAAGCTGTCGTTGAACTCTACGACACGGCATCCGGTCAATTACTGGACCT
CTATCGTGTCTCTGTGGAAGAACACTGCAATTCGGTGACGATCAGCCCTG
ATGGTCAATACCTCGCCACCCATGCAGACGACGCACAAGATGTTCTCGTG
TTTCGACTAACTGATGGTGCGGGAGGACTCATTCCTAAACCACTGTCCGG
TCAACAACCCATCCGACTGCACAGTCGTGCTGAGCGTGTCACGAGAGTGG
CCTTTAAGAAACCGCAACCCGGTCAATCGGCTTACCAGATTGGCTTCAGC
ACCTCTCCTGACAGACAGATCCTCTCAGAATTTGACTTCTCCGGACCAGA
TTTAATTCGCCTTGCAGGTCCAGCACCTCTCGATACCTTCATCACTCCCG
ACACCTTCGCAGCAGGCTGGCAGGCGGTGCGTGCGGAGCAAGCTGTCGTT
GAACTCTACGACACGGCATCCGGTCAATTACTGGACCTCTATCGTGTCTC
TGTGGAAGAACACTGCAATTCGGTGACGATCAGCCCTGATGGTCAATACC
TCGCCACCCATGCAGACGACGCACAAGATGTTCTCGTGTTTCGACTAACT
GATGGTGCGGGAGGACTCATTCCTAAACCACTGTCCGGTCAACAACCCAT
CCGACTGCACAGTCGTGCTGAGCGTGTCACGAGAGTGGCCTTTAAGAAAC
CGCAACCCGGTCAATCGGCTTACCAGATTGGCTTCAGCACCTCTCCTGAC
AGACAGATCCTCTCAGAATTTGACTTCTCCGGACCAGATTTAATTCGCCT
TGCAGGTCCAGCACCTCTCGATACCTTCATCACTCCCGACACCTTCGCAG
CAGGCTGGCAGGCGGTGCGTGCGGAG
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